Small Turing universal signal machines

This article aims at providing signal machines as small as possible able to perform any computation (in the classical understanding). After presenting signal machines, it is shown how to get universal ones from Turing machines, cellular-automata and cyclic tag systems. Finally a halting universal signal machine with 13 meta-signals and 21 collision rules is presented

Undecidability of the Spectral Gap (full version)

We show that the spectral gap problem is undecidable. Specifically, we construct families of translationally-invariant, nearest-neighbour Hamiltonians on a 2D square lattice of d-level quantum systems (d constant), for which determining whether the system is gapped or gapless is an undecidable problem. This is true even with the promise that each Hamiltonian is either gapped or gapless in the strongest sense: it is promised to either have continuous spectrum above the ground state in the thermodynamic limit, or its spectral gap is lower-bounded by a constant in the thermodynamic limit. Moreover, this constant can be taken equal to the local interaction strength of the Hamiltonian.Comment: v1: 146 pages, 56 theorems etc., 15 figures. See shorter companion paper arXiv:1502.04135 (same title and authors) for a short version omitting technical details. v2: Small but important fix to wording of abstract. v3: Simplified and shortened some parts of the proof; minor fixes to other parts. Now only 127 pages, 55 theorems etc., 10 figures. v4: Minor updates to introductio

Computational Complexity of Atomic Chemical Reaction Networks

Informally, a chemical reaction network is "atomic" if each reaction may be interpreted as the rearrangement of indivisible units of matter. There are several reasonable definitions formalizing this idea. We investigate the computational complexity of deciding whether a given network is atomic according to each of these definitions. Our first definition, primitive atomic, which requires each reaction to preserve the total number of atoms, is to shown to be equivalent to mass conservation. Since it is known that it can be decided in polynomial time whether a given chemical reaction network is mass-conserving, the equivalence gives an efficient algorithm to decide primitive atomicity. Another definition, subset atomic, further requires that all atoms are species. We show that deciding whether a given network is subset atomic is in $\textsf{NP}$, and the problem "is a network subset atomic with respect to a given atom set" is strongly $\textsf{NP}$-$\textsf{Complete}$. A third definition, reachably atomic, studied by Adleman, Gopalkrishnan et al., further requires that each species has a sequence of reactions splitting it into its constituent atoms. We show that there is a $\textbf{polynomial-time algorithm}$ to decide whether a given network is reachably atomic, improving upon the result of Adleman et al. that the problem is $\textbf{decidable}$. We show that the reachability problem for reachably atomic networks is $\textsf{Pspace}$-$\textsf{Complete}$. Finally, we demonstrate equivalence relationships between our definitions and some special cases of another existing definition of atomicity due to Gnacadja

Programmation et indécidabilités dans les systèmes complexes

N/AUn système complexe est un système constitué d'un ensemble d'entités quiinteragissent localement, engendrant des comportements globaux, émergeant dusystème, qu'on ne sait pas expliquer à partir du comportement local, connu, desentités qui le constituent. Nos travaux ont pour objet de mieux cerner lesliens entre certaines propriétés des systèmes complexes et le calcul. Parcalcul, il faut entendre l'objet d'étude de l'informatique, c'est-à-dire ledéplacement et la combinaison d'informations. À l'aide d'outils issus del'informatique, l'algorithmique et la programmation dans les systèmes complexessont abordées selon trois points de vue. Une première forme de programmation,dite externe, consiste à développer l'algorithmique qui permet de simuler lessystèmes étudiés. Une seconde forme de programmation, dite interne, consiste àdévelopper l'algorithmique propre à ces systèmes, qui permet de construire desreprésentants de ces systèmes qui exhibent des comportements programmés. Enfin,une troisième forme de programmation, de réduction, consiste à plonger despropriétés calculatoires complexes dans les représentants de ces systèmes pourétablir des résultats d'indécidabilité -- indice d'une grande complexitécalculatoire qui participe à l'explication de la complexité émergente. Afin demener à bien cette étude, les systèmes complexes sont modélisés par desautomates cellulaires. Le modèle des automates cellulaires offre une dualitépertinente pour établir des liens entre complexité des propriétés globales etcalcul. En effet, un automate cellulaire peut être décrit à la fois comme unréseau d'automates, offrant un point de vue familier de l'informatique, etcomme un système dynamique discret, une fonction définie sur un espacetopologique, offrant un point de vue familier de l'étude des systèmesdynamiques discrets.Une première partie de nos travaux concerne l'étude de l'objet automatecellulaire proprement dit. L'observation expérimentale des automatescellulaires distingue, dans la littérature, deux formes de dynamiques complexesdominantes. Certains automates cellulaires présentent une dynamique danslaquelle émergent des structures simples, sortes de particules qui évoluentdans un domaine régulier, se rencontrent lors de brèves collisions, avant degénérer d'autres particules. Cette forme de complexité, dans laquelletransparaît une notion de quanta d'information localisée en interaction, estl'objet de nos études. Un premier champ de nos investigations est d'établir uneclassification algébrique, le groupage, qui tend à rendre compte de ce type decomportement. Cette classification met à jour un type d'automate cellulaireparticulier : les automates cellulaires intrinsèquement universels. Un automatecellulaire intrinsèquement universel est capable de simuler le comportement detout automate cellulaire. C'est l'objet de notre second champ d'investigation.Nous caractérisons cette propriété et démontrons son indécidabilité. Enfin, untroisième champ d'investigation concerne l'algorithmique des automatescellulaires à particules et collisions. Étant donné un ensemble de particuleset de collisions d'un tel automate cellulaire, nous étudions l'ensemble desinteractions possibles et proposons des outils pour une meilleure programmationinterne à l'aide de ces collisions.Une seconde partie de nos travaux concerne la programmation par réduction. Afinde démontrer l'indécidabilité de propriétés dynamiques des automatescellulaires, nous étudions d'une part les problèmes de pavage du plan par desjeux de tuiles finis et d'autre part les problèmes de mortalité et depériodicité dans les systèmes dynamiques discrets à fonction partielle. Cetteétude nous amène à considérer des objets qui possèdent la même dualité entredescription combinatoire et topologique que les automates cellulaires. Unenotion d'apériodicité joue un rôle central dans l'indécidabilité des propriétésde ces objets

Proceedings of JAC 2010. Journées Automates Cellulaires

The second Symposium on Cellular Automata “Journ´ees Automates Cellulaires” (JAC 2010) took place in Turku, Finland, on December 15-17, 2010. The first two conference days were held in the Educarium building of the University of Turku, while the talks of the third day were given onboard passenger ferry boats in the beautiful Turku archipelago, along the route Turku–Mariehamn–Turku. The conference was organized by FUNDIM, the Fundamentals of Computing and Discrete Mathematics research center at the mathematics department of the University of Turku. The program of the conference included 17 submitted papers that were selected by the international program committee, based on three peer reviews of each paper. These papers form the core of these proceedings. I want to thank the members of the program committee and the external referees for the excellent work that have done in choosing the papers to be presented in the conference. In addition to the submitted papers, the program of JAC 2010 included four distinguished invited speakers: Michel Coornaert (Universit´e de Strasbourg, France), Bruno Durand (Universit´e de Provence, Marseille, France), Dora Giammarresi (Universit` a di Roma Tor Vergata, Italy) and Martin Kutrib (Universit¨at Gie_en, Germany). I sincerely thank the invited speakers for accepting our invitation to come and give a plenary talk in the conference. The invited talk by Bruno Durand was eventually given by his co-author Alexander Shen, and I thank him for accepting to make the presentation with a short notice. Abstracts or extended abstracts of the invited presentations appear in the first part of this volume. The program also included several informal presentations describing very recent developments and ongoing research projects. I wish to thank all the speakers for their contribution to the success of the symposium. I also would like to thank the sponsors and our collaborators: the Finnish Academy of Science and Letters, the French National Research Agency project EMC (ANR-09-BLAN-0164), Turku Centre for Computer Science, the University of Turku, and Centro Hotel. Finally, I sincerely thank the members of the local organizing committee for making the conference possible. These proceedings are published both in an electronic format and in print. The electronic proceedings are available on the electronic repository HAL, managed by several French research agencies. The printed version is published in the general publications series of TUCS, Turku Centre for Computer Science. We thank both HAL and TUCS for accepting to publish the proceedings.Siirretty Doriast

Boolean Delay Equations: A simple way of looking at complex systems

Boolean Delay Equations (BDEs) are semi-discrete dynamical models with Boolean-valued variables that evolve in continuous time. Systems of BDEs can be classified into conservative or dissipative, in a manner that parallels the classification of ordinary or partial differential equations. Solutions to certain conservative BDEs exhibit growth of complexity in time. They represent therewith metaphors for biological evolution or human history. Dissipative BDEs are structurally stable and exhibit multiple equilibria and limit cycles, as well as more complex, fractal solution sets, such as Devil's staircases and ``fractal sunbursts``. All known solutions of dissipative BDEs have stationary variance. BDE systems of this type, both free and forced, have been used as highly idealized models of climate change on interannual, interdecadal and paleoclimatic time scales. BDEs are also being used as flexible, highly efficient models of colliding cascades in earthquake modeling and prediction, as well as in genetics. In this paper we review the theory of systems of BDEs and illustrate their applications to climatic and solid earth problems. The former have used small systems of BDEs, while the latter have used large networks of BDEs. We moreover introduce BDEs with an infinite number of variables distributed in space (``partial BDEs``) and discuss connections with other types of dynamical systems, including cellular automata and Boolean networks. This research-and-review paper concludes with a set of open questions.Comment: Latex, 67 pages with 15 eps figures. Revised version, in particular the discussion on partial BDEs is updated and enlarge

Quantum Stochastic Processes and Quantum Many-Body Physics

This dissertation investigates the theory of quantum stochastic processes and its applications in quantum many-body physics. The main goal is to analyse complexity-theoretic aspects of both static and dynamic properties of physical systems modelled by quantum stochastic processes. The thesis consists of two parts: the first one addresses the computational complexity of certain quantum and classical divisibility questions, whereas the second one addresses the topic of Hamiltonian complexity theory. In the divisibility part, we discuss the question whether one can efficiently sub-divide a map describing the evolution of a system in a noisy environment, i.e. a CPTP- or stochastic map for quantum and classical processes, respectively, and we prove that taking the nth root of a CPTP or stochastic map is an NP-complete problem. Furthermore, we show that answering the question whether one can divide up a random variable $X$ into a sum of $n$ iid random variables $Y_i$, i.e. $X=\sum_{i=1}^n Y_i$, is poly-time computable; relaxing the iid condition renders the problem NP-hard. In the local Hamiltonian part, we study computation embedded into the ground state of a many-body quantum system, going beyond "history state" constructions with a linear clock. We first develop a series of mathematical techniques which allow us to study the energy spectrum of the resulting Hamiltonian, and extend classical string rewriting to the quantum setting. This allows us to construct the most physically-realistic QMAEXP-complete instances for the LOCAL HAMILTONIAN problem (i.e. the question of estimating the ground state energy of a quantum many-body system) known to date, both in one- and three dimensions. Furthermore, we study weighted versions of linear history state constructions, allowing us to obtain tight lower and upper bounds on the promise gap of the LOCAL HAMILTONIAN problem in various cases. We finally study a classical embedding of a Busy Beaver Turing Machine into a low-dimensional lattice spin model, which allows us to dictate a transition from a purely classical phase to a Toric Code phase at arbitrarily large and potentially even uncomputable system sizes