Parallel memetic algorithms for independent job scheduling in computational grids

In this chapter we present parallel implementations of Memetic Algorithms (MAs) for the problem of scheduling independent jobs in computational grids. The problem of scheduling in computational grids is known for its high demanding computational time. In this work we exploit the intrinsic parallel nature of MAs as well as the fact that computational grids offer large amount of resources, a part of which could be used to compute the efficient allocation of jobs to grid resources. The parallel models exploited in this work for MAs include both fine-grained and coarse-grained parallelization and their hybridization. The resulting schedulers have been tested through different grid scenarios generated by a grid simulator to match different possible configurations of computational grids in terms of size (number of jobs and resources) and computational characteristics of resources. All in all, the result of this work showed that Parallel MAs are very good alternatives in order to match different performance requirement on fast scheduling of jobs to grid resources.Peer ReviewedPostprint (author's final draft

A Taxonomy of Data Grids for Distributed Data Sharing, Management and Processing

Data Grids have been adopted as the platform for scientific communities that need to share, access, transport, process and manage large data collections distributed worldwide. They combine high-end computing technologies with high-performance networking and wide-area storage management techniques. In this paper, we discuss the key concepts behind Data Grids and compare them with other data sharing and distribution paradigms such as content delivery networks, peer-to-peer networks and distributed databases. We then provide comprehensive taxonomies that cover various aspects of architecture, data transportation, data replication and resource allocation and scheduling. Finally, we map the proposed taxonomy to various Data Grid systems not only to validate the taxonomy but also to identify areas for future exploration. Through this taxonomy, we aim to categorise existing systems to better understand their goals and their methodology. This would help evaluate their applicability for solving similar problems. This taxonomy also provides a "gap analysis" of this area through which researchers can potentially identify new issues for investigation. Finally, we hope that the proposed taxonomy and mapping also helps to provide an easy way for new practitioners to understand this complex area of research.Comment: 46 pages, 16 figures, Technical Repor

Optimisation of maintenance scheduling strategies on the grid

The emerging paradigm of Grid Computing provides a powerful platform for the optimisation of complex computer models, such as those used to simulate real-world logistics and supply chain operations. This paper introduces a Grid-based optimisation framework that provides a powerful tool for the optimisation of such computationally intensive objective functions. This framework is then used in the optimisation of maintenance scheduling strategies for fleets of aero-engines, a computationally intensive problem with a high-degree of stochastic noise, achieving substantial improvements in the execution time of the algorithm

Implementation of Genetic Algorithms in FPGA-based Reconfigurable Computing Systems

Genetic Algorithms (GAs) are used to solve many optimization problems in science and engineering. GA is a heuristics approach which relies largely on random numbers to determine the approximate solution of an optimization problem. We use the Mersenne Twister Algorithm (MTA) to generate a non-overlapping sequence of random numbers with a period of 219937-1. The random numbers are generated from a state vector that consists of 624 elements. Our work on state vector generation and the GA implementation targets the solution of a flow-line scheduling problem where the flow-lines have jobs to process and the goal is to find a suitable completion time for all jobs using a GA. The state vector generation algorithm (MTA) performs poorly in traditional von Neumann architectures due to its poor temporal and spatial locality. Therefore its performance is limited by the speed at which we can access memory. With an approximate increase of processor performance by 60% per year and a drop of memory latency only 7% per year, a new approach is needed for performance improvement. On the other hand, the GA implementation in a general-purpose microprocessor, though performs reasonably well, has scope for performance gain in a parallel implementation. The parallel implementation of the GA can work as a kernel for applications that uses a GA to reach a solution. Our approach is to implement the state vector generation process and the GA in an FPGA-based Reconfigurable Computing (RC) system with the goal of improving the overall performance. Application design for FPGA-based RC systems is not trivial and the performance improvement is not guaranteed. Designing for RC systems requires algorithmic parallelism in order to exploit the inherent parallelism of the FPGA. We are using a high-level language that provides a level of abstraction from the lower-level hardware in the RC system making it difficult to fully exploit some of the architectural benefits of the FPGA. Considering these factors, we improve the state vector generation process algorithmically. Our implementation generates state vectors 5X faster than the previous implementation in an Intel Xeon microprocessor of 2GHz. The modified algorithm is also implemented in a Xilinx Virtex-4 FPGA that results in a 2.4X speedup. Improvement in this preprocessing step accelerates GA application performance as random numbers are generated from these state vectors for the genetic operators. We simulate the basic operations of a GA in an FPGA to study its behavior in a parallel environment and analyze the results. The initial FPGA implementation of the GA runs about 7X slower than its microprocessor counterpart. The reasons are explained along with suggestions for improvement and future work

Lattice QCD Thermodynamics on the Grid

We describe how we have used simultaneously ${\cal O}(10^3)$ nodes of the EGEE Grid, accumulating ca. 300 CPU-years in 2-3 months, to determine an important property of Quantum Chromodynamics. We explain how Grid resources were exploited efficiently and with ease, using user-level overlay based on Ganga and DIANE tools above standard Grid software stack. Application-specific scheduling and resource selection based on simple but powerful heuristics allowed to improve efficiency of the processing to obtain desired scientific results by a specified deadline. This is also a demonstration of combined use of supercomputers, to calculate the initial state of the QCD system, and Grids, to perform the subsequent massively distributed simulations. The QCD simulation was performed on a $16^3\times 4$ lattice. Keeping the strange quark mass at its physical value, we reduced the masses of the up and down quarks until, under an increase of temperature, the system underwent a second-order phase transition to a quark-gluon plasma. Then we measured the response of this system to an increase in the quark density. We find that the transition is smoothened rather than sharpened. If confirmed on a finer lattice, this finding makes it unlikely for ongoing experimental searches to find a QCD critical point at small chemical potential

Parallel optimization algorithms for high performance computing : application to thermal systems

The need of optimization is present in every field of engineering. Moreover, applications requiring a multidisciplinary approach in order to make a step forward are increasing. This leads to the need of solving complex optimization problems that exceed the capacity of human brain or intuition. A standard way of proceeding is to use evolutionary algorithms, among which genetic algorithms hold a prominent place. These are characterized by their robustness and versatility, as well as their high computational cost and low convergence speed. Many optimization packages are available under free software licenses and are representative of the current state of the art in optimization technology. However, the ability of optimization algorithms to adapt to massively parallel computers reaching satisfactory efficiency levels is still an open issue. Even packages suited for multilevel parallelism encounter difficulties when dealing with objective functions involving long and variable simulation times. This variability is common in Computational Fluid Dynamics and Heat Transfer (CFD & HT), nonlinear mechanics, etc. and is nowadays a dominant concern for large scale applications. Current research in improving the performance of evolutionary algorithms is mainly focused on developing new search algorithms. Nevertheless, there is a vast knowledge of sequential well-performing algorithmic suitable for being implemented in parallel computers. The gap to be covered is efficient parallelization. Moreover, advances in the research of both new search algorithms and efficient parallelization are additive, so that the enhancement of current state of the art optimization software can be accelerated if both fronts are tackled simultaneously. The motivation of this Doctoral Thesis is to make a step forward towards the successful integration of Optimization and High Performance Computing capabilities, which has the potential to boost technological development by providing better designs, shortening product development times and minimizing the required resources. After conducting a thorough state of the art study of the mathematical optimization techniques available to date, a generic mathematical optimization tool has been developed putting a special focus on the application of the library to the field of Computational Fluid Dynamics and Heat Transfer (CFD & HT). Then the main shortcomings of the standard parallelization strategies available for genetic algorithms and similar population-based optimization methods have been analyzed. Computational load imbalance has been identified to be the key point causing the degradation of the optimization algorithm¿s scalability (i.e. parallel efficiency) in case the average makespan of the batch of individuals is greater than the average time required by the optimizer for performing inter-processor communications. It occurs because processors are often unable to finish the evaluation of their queue of individuals simultaneously and need to be synchronized before the next batch of individuals is created. Consequently, the computational load imbalance is translated into idle time in some processors. Several load balancing algorithms have been proposed and exhaustively tested, being extendable to any other population-based optimization method that needs to synchronize all processors after the evaluation of each batch of individuals. Finally, a real-world engineering application that consists on optimizing the refrigeration system of a power electronic device has been presented as an illustrative example in which the use of the proposed load balancing algorithms is able to reduce the simulation time required by the optimization tool.El aumento de las aplicaciones que requieren de una aproximación multidisciplinar para poder avanzar se constata en todos los campos de la ingeniería, lo cual conlleva la necesidad de resolver problemas de optimización complejos que exceden la capacidad del cerebro humano o de la intuición. En estos casos es habitual el uso de algoritmos evolutivos, principalmente de los algoritmos genéticos, caracterizados por su robustez y versatilidad, así como por su gran coste computacional y baja velocidad de convergencia. La multitud de paquetes de optimización disponibles con licencias de software libre representan el estado del arte actual en tecnología de optimización. Sin embargo, la capacidad de adaptación de los algoritmos de optimización a ordenadores masivamente paralelos alcanzando niveles de eficiencia satisfactorios es todavía una tarea pendiente. Incluso los paquetes adaptados al paralelismo multinivel tienen dificultades para gestionar funciones objetivo que requieren de tiempos de simulación largos y variables. Esta variabilidad es común en la Dinámica de Fluidos Computacional y la Transferencia de Calor (CFD & HT), mecánica no lineal, etc. y es una de las principales preocupaciones en aplicaciones a gran escala a día de hoy. La investigación actual que tiene por objetivo la mejora del rendimiento de los algoritmos evolutivos está enfocada principalmente al desarrollo de nuevos algoritmos de búsqueda. Sin embargo, ya se conoce una gran variedad de algoritmos secuenciales apropiados para su implementación en ordenadores paralelos. La tarea pendiente es conseguir una paralelización eficiente. Además, los avances en la investigación de nuevos algoritmos de búsqueda y la paralelización son aditivos, por lo que el proceso de mejora del software de optimización actual se verá incrementada si se atacan ambos frentes simultáneamente. La motivación de esta Tesis Doctoral es avanzar hacia una integración completa de las capacidades de Optimización y Computación de Alto Rendimiento para así impulsar el desarrollo tecnológico proporcionando mejores diseños, acortando los tiempos de desarrollo del producto y minimizando los recursos necesarios. Tras un exhaustivo estudio del estado del arte de las técnicas de optimización matemática disponibles a día de hoy, se ha diseñado una librería de optimización orientada al campo de la Dinámica de Fluidos Computacional y la Transferencia de Calor (CFD & HT). A continuación se han analizado las principales limitaciones de las estrategias de paralelización disponibles para algoritmos genéticos y otros métodos de optimización basados en poblaciones. En el caso en que el tiempo de evaluación medio de la tanda de individuos sea mayor que el tiempo medio que necesita el optimizador para llevar a cabo comunicaciones entre procesadores, se ha detectado que la causa principal de la degradación de la escalabilidad o eficiencia paralela del algoritmo de optimización es el desequilibrio de la carga computacional. El motivo es que a menudo los procesadores no terminan de evaluar su cola de individuos simultáneamente y deben sincronizarse antes de que se cree la siguiente tanda de individuos. Por consiguiente, el desequilibrio de la carga computacional se convierte en tiempo de inactividad en algunos procesadores. Se han propuesto y testado exhaustivamente varios algoritmos de equilibrado de carga aplicables a cualquier método de optimización basado en una población que necesite sincronizar los procesadores tras cada tanda de evaluaciones. Finalmente, se ha presentado como ejemplo ilustrativo un caso real de ingeniería que consiste en optimizar el sistema de refrigeración de un dispositivo de electrónica de potencia. En él queda demostrado que el uso de los algoritmos de equilibrado de carga computacional propuestos es capaz de reducir el tiempo de simulación que necesita la herramienta de optimización

A comparison between centralized and decentralized genetic algorithms for the identical parallel machines scheduling

Identical parallel machines problems (Pm) involve task assignments to the system's resources (a machine bank in parallel). The basic model consists of m machines and n tasks. The tasks are assigned according to the availability of the resources, following some allocation rule. In this work, the minimization of some objectives related to the due dates such as the maximum tardiness (Tmax) and the average tardiness (Tavg) were dealt with centralized and decentralized evolutive algorithms (EAs). In order to test our algorithms we used standard benchmarks. The main goal of this research was determinate the quality of the results obtained with a centralized GA and three decentralized GAs used to solve parallel machines scheduling problems. The results were compared using the ANOVA statistic method.Red de Universidades con Carreras en Informática (RedUNCI