A Machine Learning Based Source Property Inference for Compact Binary Mergers

The detection of the binary neutron star (BNS) merger, GW170817, was the first success story of multi-messenger observations of compact binary mergers. The inferred merger rate along with the increased sensitivity of the ground-based gravitational-wave (GW) network in the present LIGO/Virgo, and future LIGO/Virgo/KAGRA observing runs, strongly hints at detection of binaries which could potentially have an electromagnetic (EM) counterpart. A rapid assessment of properties that could lead to a counterpart is essential to aid time-sensitive follow-up operations, especially robotic telescopes. At minimum, the possibility of counterparts require a neutron star (NS). Also, the tidal disruption physics is important to determine the remnant matter post merger, the dynamics of which could result in the counterparts. The main challenge, however, is that the binary system parameters such as masses and spins estimated from the real time, GW template-based searches are often dominated by statistical and systematic errors. Here, we present an approach that uses supervised machine-learning to mitigate such selection effects to report possibility of counterparts based on presence of a NS component, and presence of remnant matter post merger in real time.Comment: accepted in Ap

Harbingers of Exotic Transients: The Electromagnetic Follow-up of Gravitational-wave Transients & Transient Rates

Gravitational waves (GWs) provide a unique view of the universe. They directly probe the extreme gravity and extreme matter of compact objects like black holes (BHs) and neutron stars (NSs) which is not always possible from traditional electromagnetic (EM) wave astronomy. The cataclysmic coalescence of compact object binaries is one of the loudest individual sources of GWs that can be detected by the Laser Interferometer Gravitational wave Observatory (LIGO) and the Virgo Observatory. If one of the component is a NS, there is a possibility that the merger is bright in the EM spectrum. The relativistic astrophysics could launch a short gamma-ray burst, the radioactivity in the neutron rich ejecta could power a rapidly decaying optical transient called a kilonova. Hence, it is possible to jointly observe the same source via multiple messengers. It is this prospect of multi-messenger astronomy using GWs that is of great interest due to the rich science that can be extracted from such joint observations. In this thesis, I present the details of my work with the LIGO Scientific Collaboration and Virgo Collaboration in the context of multi-messenger astronomy. I also report my work on the time-domain astronomy front in the development of an observing strategy for the Zwicky Transient Facility (ZTF), and characterizing the detection efficiency of the intermediate Palomar Transient Factory (iPTF)

Predicting electromagnetic counterparts using low-latency gravitational-wave data products

Searches for gravitational-wave counterparts have been going in earnest since GW170817 and the discovery of AT2017gfo. Since then, the lack of detection of other optical counterparts connected to binary neutron star or black hole–neutron star candidates has highlighted the need for a better discrimination criterion to support this effort. At the moment, low-latency gravitational-wave alerts contain preliminary information about binary properties and hence whether a detected binary might have an electromagnetic counterpart. The current alert method is a classifier that estimates the probability that there is a debris disc outside the black hole created during the merger as well as the probability of a signal being a binary neutron star, a black hole–neutron star, a binary black hole, or of terrestrial origin. In this work, we expand upon this approach to both predict the ejecta properties and provide contours of potential light curves for these events, in order to improve the follow-up observation strategy. The various sources of uncertainty are discussed, and we conclude that our ignorance about the ejecta composition and the insufficient constraint of the binary parameters by low-latency pipelines represent the main limitations. To validate the method, we test our approach on real events from the second and third Advanced Laser Interferometer Gravitational-Wave Observatory (LIGO)–Virgo observing runs

Plant Seed Identification

Plant seed identification is routinely performed for seed certification in seed trade, phytosanitary certification for the import and export of agricultural commodities, and regulatory monitoring, surveillance, and enforcement. Current identification is performed manually by seed analysts with limited aiding tools. Extensive expertise and time is required, especially for small, morphologically similar seeds. Computers are, however, especially good at recognizing subtle differences that humans find difficult to perceive. In this thesis, a 2D, image-based computer-assisted approach is proposed. The size of plant seeds is extremely small compared with daily objects. The microscopic images of plant seeds are usually degraded by defocus blur due to the high magnification of the imaging equipment. It is necessary and beneficial to differentiate the in-focus and blurred regions given that only sharp regions carry distinctive information usually for identification. If the object of interest, the plant seed in this case, is in- focus under a single image frame, the amount of defocus blur can be employed as a cue to separate the object and the cluttered background. If the defocus blur is too strong to obscure the object itself, sharp regions of multiple image frames acquired at different focal distance can be merged together to make an all-in-focus image. This thesis describes a novel non-reference sharpness metric which exploits the distribution difference of uniform LBP patterns in blurred and non-blurred image regions. It runs in realtime on a single core cpu and responses much better on low contrast sharp regions than the competitor metrics. Its benefits are shown both in defocus segmentation and focal stacking. With the obtained all-in-focus seed image, a scale-wise pooling method is proposed to construct its feature representation. Since the imaging settings in lab testing are well constrained, the seed objects in the acquired image can be assumed to have measureable scale and controllable scale variance. The proposed method utilizes real pixel scale information and allows for accurate comparison of seeds across scales. By cross-validation on our high quality seed image dataset, better identification rate (95%) was achieved compared with pre- trained convolutional-neural-network-based models (93.6%). It offers an alternative method for image based identification with all-in-focus object images of limited scale variance. The very first digital seed identification tool of its kind was built and deployed for test in the seed laboratory of Canadian food inspection agency (CFIA). The proposed focal stacking algorithm was employed to create all-in-focus images, whereas scale-wise pooling feature representation was used as the image signature. Throughput, workload, and identification rate were evaluated and seed analysts reported significantly lower mental demand (p = 0.00245) when using the provided tool compared with manual identification. Although the identification rate in practical test is only around 50%, I have demonstrated common mistakes that have been made in the imaging process and possible ways to deploy the tool to improve the recognition rate

Person Re-identification and Tracking in Video Surveillance

Video surveillance system is one of the most essential topics in the computer vision field. As the rapid and continuous increasement of using video surveillance cameras to obtain portrait information in scenes, it becomes a very important system for security and criminal investigations. Video surveillance system includes many key technologies, including the object recognition, the object localization, the object re-identification, object tracking, and by which the system can be used to identify or suspect the movements of the objects and persons. In recent years, person re-identification and visual object tracking have become hot research directions in the computer vision field. The re-identification system aims to recognize and identify the target of the required attributes, and the tracking system aims at following and predicting the movement of the target after the identification process. Researchers have used deep learning and computer vision technologies to significantly improve the performance of person re-identification. However, the study of person re-identification is still challenging due to complex application environments such as lightning variations, complex background transformations, low-resolution images, occlusions, and a similar dressing of different pedestrians. The challenge of this task also comes from unavailable bounding boxes for pedestrians, and the need to search for the person over the whole gallery images. To address these critical issues in modern person identification applications, we propose an algorithm that can accurately localize persons by learning to minimize intra-person feature variations. We build our model upon the state-of-the-art object detection framework, i.e., faster R-CNN, so that high-quality region proposals for pedestrians can be produced in an online manner. In addition, to relieve the negative effects caused by varying visual appearances of the same individual, we introduce a novel center loss that can increase the intra-class compactness of feature representations. The engaged center loss encourages persons with the same identity to have similar feature characteristics. Besides the localization of a single person, we explore a more general visual object tracking problem. The main task of the visual object tracking is to predict the location and size of the tracking target accurately and reliably in subsequent image sequences when the target is given at the beginning of the sequence. A visual object tracking algorithm with high accuracy, good stability, and fast inference speed is necessary. In this thesis, we study the updating problem for two kinds of tracking algorithms among the mainstream tracking approaches, and improve the robustness and accuracy. Firstly, we extend the siamese tracker with a model updating mechanism to improve their tracking robustness. A siamese tracker uses a deep convolutional neural network to obtain features and compares the new frame features with the target features in the first frame. The candidate region with the highest similarity score is considered as the tracking result. However, these kinds of trackers are not robust against large target variation due to the no-update matching strategy during the whole tracking process. To combat this defect, we propose an ensemble siamese tracker, where the final similarity score is also affected by the similarity with tracking results in recent frames instead of solely considering the first frame. Tracking results in recent frames are used to adjust the model for a continuous target change. Meanwhile, we combine adaptive candidate sampling strategy and large displacement optical flow method to improve its performance further. Secondly, we investigate the classic correlation filter based tracking algorithm and propose to provide a better model selection strategy by reinforcement learning. Correlation filter has been proven to be a useful tool for a number of approaches in visual tracking, particularly for seeking a good balance between tracking accuracy and speed. However, correlation filter based models are susceptible to wrong updates stemming from inaccurate tracking results. To date, little effort has been devoted to handling the correlation filter update problem. In our approach, we update and maintain multiple correlation filter models in parallel, and we use deep reinforcement learning for the selection of an optimal correlation filter model among them. To facilitate the decision process efficiently, we propose a decision-net to deal with target appearance modeling, which is trained through hundreds of challenging videos using proximal policy optimization and a lightweight learning network. An exhaustive evaluation of the proposed approach on the OTB100 and OTB2013 benchmarks show the effectiveness of our approach

Detection of Motorcycles in Urban Traffic Using Video Analysis: A Review

Motorcycles are Vulnerable Road Users (VRU) and as such, in addition to bicycles and pedestrians, they are the traffic actors most affected by accidents in urban areas. Automatic video processing for urban surveillance cameras has the potential to effectively detect and track these road users. The present review focuses on algorithms used for detection and tracking of motorcycles, using the surveillance infrastructure provided by CCTV cameras. Given the importance of results achieved by Deep Learning theory in the field of computer vision, the use of such techniques for detection and tracking of motorcycles is also reviewed. The paper ends by describing the performance measures generally used, publicly available datasets (introducing the Urban Motorbike Dataset (UMD) with quantitative evaluation results for different detectors), discussing the challenges ahead and presenting a set of conclusions with proposed future work in this evolving area

Gesture tracking and neural activity segmentation in head-fixed behaving mice by deep learning methods

The typical approach used by neuroscientists is to study the response of laboratory animals to a stimulus while recording their neural activity at the same time. With the advent of calcium imaging technology, researchers can now study neural activity at sub-cellular resolutions in vivo. Similarly, recording the behaviour of laboratory animals is also becoming more affordable. Although it is now easier to record behavioural and neural data, this data comes with its own set of challenges. The biggest challenge, given the sheer volume of the data, is annotation. A traditional approach is to annotate the data manually, frame by frame. With behavioural data, manual annotation is done by looking at each frame and tracing the animals; with neural data, this is carried out by a trained neuroscientist. In this research, we propose automated tools based on deep learning that can aid in the processing of behavioural and neural data. These tools will help neuroscientists annotate and analyse the data they acquire in an automated and reliable way.La configuración típica empleada por los neurocientíficos consiste en estudiar la respuesta de los animales de laboratorio a un estímulo y registrar al mismo tiempo su actividad neuronal. Con la llegada de la tecnología de imágenes del calcio, los investigadores pueden ahora estudiar la actividad neuronal a resoluciones subcelulares in vivo. Del mismo modo, el registro del comportamiento de los animales de laboratorio también se está volviendo más asequible. Aunque ahora es más fácil registrar los datos del comportamiento y los datos neuronales, estos datos ofrecen su propio conjunto de desafíos. El mayor desafío es la anotación de los datos debido a su gran volumen. Un enfoque tradicional es anotar los datos manualmente, fotograma a fotograma. En el caso de los datos sobre el comportamiento, la anotación manual se hace mirando cada fotograma y rastreando los animales, mientras que, para los datos neuronales, la anotación la hace un neurocientífico capacitado. En esta investigación, proponemos herramientas automatizadas basadas en el aprendizaje profundo que pueden ayudar a procesar los datos de comportamiento y los datos neuronales.La configuració típica emprada pels neurocientífics consisteix a estudiar la resposta dels animals de laboratori a un estímul i registrar al mateix temps la seva activitat neuronal. Amb l'arribada de la tecnologia d'imatges basades en calci, els investigadors poden ara estudiar l'activitat neuronal a resolucions subcel·lulars in vivo. De la mateixa manera, el registre del comportament dels animals de laboratori també ha esdevingut molt més assequible. Tot i que ara és més fàcil registrar les dades del comportament i les dades neuronals, aquestes dades ofereixen el seu propi conjunt de reptes. El major desafiament és l'anotació de les dades, degut al seu gran volum. Un enfocament tradicional és anotar les dades manualment, fotograma a fotograma. En el cas de les dades sobre el comportament, l'anotació manual es fa mirant cada fotograma i rastrejant els animals, mentre que per a les dades neuronals, l'anotació la fa un neurocientífic capacitat. En aquesta investigació, proposem eines automatitzades basades en laprenentatge profund que poden ajudar a modelar les dades de comportament i les dades neuronals

A Variational Reconstruction Method for Undersampled Dynamic X-ray Tomography based on Physical Motion Models

In this paper we study the reconstruction of moving object densities from undersampled dynamic x-ray tomography in two dimensions. A particular motivation of this study is to use realistic measurement protocols for practical applications, i.e. we do not assume to have a full Radon transform in each time step, but only projections in few angular directions. This restriction enforces a space-time reconstruction, which we perform by incorporating physical motion models and regularization of motion vectors in a variational framework. The methodology of optical flow, which is one of the most common methods to estimate motion between two images, is utilized to formulate a joint variational model for reconstruction and motion estimation. We provide a basic mathematical analysis of the forward model and the variational model for the image reconstruction. Moreover, we discuss the efficient numerical minimization based on alternating minimizations between images and motion vectors. A variety of results are presented for simulated and real measurement data with different sampling strategy. A key observation is that random sampling combined with our model allows reconstructions of similar amount of measurements and quality as a single static reconstruction.Peer reviewe

The statistical properties and coding of handwriting and hand-drawn graphics in tutorial classes

This research investigates compression techniques as applied to input from a digitizing tablet. The representations we consider are either drawn from the literature or developed within this thesis; they involve selecting relevant points along the trajectory of the writing pen, and using an interpolating function for reconstruction. The two dimensional parametric polynomial interpolator (e.g linear, quadratic, cubic ) is used for regenerating the trajectory of the pen. Several techniques for selecting relevant points , i.e control points are discussed. We determine our best representation by weighting the criteria, analyzing the experimental results, examining the theoretical considerations and, making where necessary, justifiable tradeoffs. The techniques tested are objectively evaluated in terms of accuracy, efficiency and compactness. The information characteristics (i.e signal entropy) of the handwriting and drawing signals, are estimated from the original and approximated data. Results are discussed and conclusions drawn. The research has been carried out on static data

Automatic object classification for surveillance videos.

PhDThe recent popularity of surveillance video systems, specially located in urban scenarios, demands the development of visual techniques for monitoring purposes. A primary step towards intelligent surveillance video systems consists on automatic object classification, which still remains an open research problem and the keystone for the development of more specific applications. Typically, object representation is based on the inherent visual features. However, psychological studies have demonstrated that human beings can routinely categorise objects according to their behaviour. The existing gap in the understanding between the features automatically extracted by a computer, such as appearance-based features, and the concepts unconsciously perceived by human beings but unattainable for machines, or the behaviour features, is most commonly known as semantic gap. Consequently, this thesis proposes to narrow the semantic gap and bring together machine and human understanding towards object classification. Thus, a Surveillance Media Management is proposed to automatically detect and classify objects by analysing the physical properties inherent in their appearance (machine understanding) and the behaviour patterns which require a higher level of understanding (human understanding). Finally, a probabilistic multimodal fusion algorithm bridges the gap performing an automatic classification considering both machine and human understanding. The performance of the proposed Surveillance Media Management framework has been thoroughly evaluated on outdoor surveillance datasets. The experiments conducted demonstrated that the combination of machine and human understanding substantially enhanced the object classification performance. Finally, the inclusion of human reasoning and understanding provides the essential information to bridge the semantic gap towards smart surveillance video systems