Implicit Representations of the Human Intestines for Surgery Simulation

International audienceIn this paper, we propose a modeling of the intestines by implicit surfaces for abdominal surgery simulation. The difficulty of such a simulation comes from the animation of the intestines. As a matter of fact, the intestines are a very long tube that is not isotropically elastic, and that bends over itself at various spots, creating multiple self-contacts. We use a multiple component model for the intestines: The first component is a mechanical model of their axis; the second component is a specific sphere-based model to manage collisions and self-collisions; and the third component is a skinning model to define their volume. This paper focuses on the better representation for skinning the intestines. We compare two implicit models: Surfaces defined by point-skeletons and convolution surfaces. A direct application of this simulation is the training of a typical surgical gesture to move apart the intestines in order to reach certain areas of the abdomen

Focal Spot, Spring 1987

https://digitalcommons.wustl.edu/focal_spot_archives/1045/thumbnail.jp

Physiological system modelling

Computer graphics has a major impact in our day-to-day life. It is used in diverse areas such as displaying the results of engineering and scientific computations and visualization, producing television commercials and feature films, simulation and analysis of real world problems, computer aided design, graphical user interfaces that increases the communication bandwidth between humans and machines, etc Scientific visualization is a well-established method for analysis of data, originating from scientific computations, simulations or measurements. The development and implementation of the 3Dgen software was developed by the author using OpenGL and C language was presented in this report 3Dgen was used to visualize threedimensional cylindrical models such as pipes and also for limited usage in virtual endoscopy. Using the developed software a model was created using the centreline data input by the user or from the output of some other program, stored in a normal text file. The model was constructed by drawing surface polygons between two adjacent centreline points. The software allows the user to view the internal and external surfaces of the model. The software was designed in such a way that it runs in more than one operating systems with minimal installation procedures Since the size of the software is very small it can be stored in a 1 44 Megabyte floppy diskette. Depending on the processing speed of the PC the software can generate models of any length and size Compared to other packages, 3Dgen has minimal input procedures was able to generate models with smooth bends. It has both modelling and virtual exploration features. For models with sharp bends the software generates an overshoot

직접 볼륨 렌더링에서 점진적 렌즈 샘플링을 사용한 피사계 심도 렌더링

학위논문 (박사) -- 서울대학교 대학원 : 공과대학 전기·컴퓨터공학부, 2021. 2. 신영길.Direct volume rendering is a widely used technique for extracting information from 3D scalar fields acquired by measurement or numerical simulation. To visualize the structure inside the volume, the voxels scalar value is often represented by a translucent color. This translucency of direct volume rendering makes it difficult to perceive the depth between the nested structures. Various volume rendering techniques to improve depth perception are mainly based on illustrative rendering techniques, and physically based rendering techniques such as depth of field effects are difficult to apply due to long computation time. With the development of immersive systems such as virtual and augmented reality and the growing interest in perceptually motivated medical visualization, it is necessary to implement depth of field in direct volume rendering. This study proposes a novel method for applying depth of field effects to volume ray casting to improve the depth perception. By performing ray casting using multiple rays per pixel, objects at a distance in focus are sharply rendered and objects at an out-of-focus distance are blurred. To achieve these effects, a thin lens camera model is used to simulate rays passing through different parts of the lens. And an effective lens sampling method is used to generate an aliasing-free image with a minimum number of lens samples that directly affect performance. The proposed method is implemented without preprocessing based on the GPU-based volume ray casting pipeline. Therefore, all acceleration techniques of volume ray casting can be applied without restrictions. We also propose multi-pass rendering using progressive lens sampling as an acceleration technique. More lens samples are progressively used for ray generation over multiple render passes. Each pixel has a different final render pass depending on the predicted maximum blurring size based on the circle of confusion. This technique makes it possible to apply a different number of lens samples for each pixel, depending on the degree of blurring of the depth of field effects over distance. This acceleration method reduces unnecessary lens sampling and increases the cache hit rate of the GPU, allowing us to generate the depth of field effects at interactive frame rates in direct volume rendering. In the experiments using various data, the proposed method generated realistic depth of field effects in real time. These results demonstrate that our method produces depth of field effects with similar quality to the offline image synthesis method and is up to 12 times faster than the existing depth of field method in direct volume rendering.직접 볼륨 렌더링(direct volume rendering, DVR)은 측정 또는 수치 시뮬레이션으로 얻은 3차원 공간의 스칼라 필드(3D scalar fields) 데이터에서 정보를 추출하는데 널리 사용되는 기술이다. 볼륨 내부의 구조를 가시화하기 위해 복셀(voxel)의 스칼라 값은 종종 반투명의 색상으로 표현된다. 이러한 직접 볼륨 렌더링의 반투명성은 중첩된 구조 간 깊이 인식을 어렵게 한다. 깊이 인식을 향상시키기 위한 다양한 볼륨 렌더링 기법들은 주로 삽화풍 렌더링(illustrative rendering)을 기반으로 하며, 피사계 심도(depth of field, DoF) 효과와 같은 물리 기반 렌더링(physically based rendering) 기법들은 계산 시간이 오래 걸리기 때문에 적용이 어렵다. 가상 및 증강 현실과 같은 몰입형 시스템의 발전과 인간의 지각에 기반한 의료영상 시각화에 대한 관심이 증가함에 따라 직접 볼륨 렌더링에서 피사계 심도를 구현할 필요가 있다. 본 논문에서는 직접 볼륨 렌더링의 깊이 인식을 향상시키기 위해 볼륨 광선투사법에 피사계 심도 효과를 적용하는 새로운 방법을 제안한다. 픽셀 당 여러 개의 광선을 사용한 광선투사법(ray casting)을 수행하여 초점이 맞는 거리에 있는 물체는 선명하게 표현되고 초점이 맞지 않는 거리에 있는 물체는 흐리게 표현된다. 이러한 효과를 얻기 위하여 렌즈의 서로 다른 부분을 통과하는 광선들을 시뮬레이션 하는 얇은 렌즈 카메라 모델(thin lens camera model)이 사용되었다. 그리고 성능에 직접적으로 영향을 끼치는 렌즈 샘플은 최적의 렌즈 샘플링 방법을 사용하여 최소한의 개수를 가지고 앨리어싱(aliasing)이 없는 이미지를 생성하였다. 제안한 방법은 기존의 GPU 기반 볼륨 광선투사법 파이프라인 내에서 전처리 없이 구현된다. 따라서 볼륨 광선투사법의 모든 가속화 기법을 제한없이 적용할 수 있다. 또한 가속 기술로 누진 렌즈 샘플링(progressive lens sampling)을 사용하는 다중 패스 렌더링(multi-pass rendering)을 제안한다. 더 많은 렌즈 샘플들이 여러 렌더 패스들을 거치면서 점진적으로 사용된다. 각 픽셀은 착란원(circle of confusion)을 기반으로 예측된 최대 흐림 정도에 따라 다른 최종 렌더링 패스를 갖는다. 이 기법은 거리에 따른 피사계 심도 효과의 흐림 정도에 따라 각 픽셀에 다른 개수의 렌즈 샘플을 적용할 수 있게 한다. 이러한 가속화 방법은 불필요한 렌즈 샘플링을 줄이고 GPU의 캐시(cache) 적중률을 높여 직접 볼륨 렌더링에서 상호작용이 가능한 프레임 속도로 피사계 심도 효과를 렌더링 할 수 있게 한다. 다양한 데이터를 사용한 실험에서 제안한 방법은 실시간으로 사실적인 피사계 심도 효과를 생성했다. 이러한 결과는 우리의 방법이 오프라인 이미지 합성 방법과 유사한 품질의 피사계 심도 효과를 생성하면서 직접 볼륨 렌더링의 기존 피사계 심도 렌더링 방법보다 최대 12배까지 빠르다는 것을 보여준다.CHAPTER 1 INTRODUCTION 1 1.1 Motivation 1 1.2 Dissertation Goals 5 1.3 Main Contributions 6 1.4 Organization of Dissertation 8 CHAPTER 2 RELATED WORK 9 2.1 Depth of Field on Surface Rendering 10 2.1.1 Object-Space Approaches 11 2.1.2 Image-Space Approaches 15 2.2 Depth of Field on Volume Rendering 26 2.2.1 Blur Filtering on Slice-Based Volume Rendering 28 2.2.2 Stochastic Sampling on Volume Ray Casting 30 CHAPTER 3 DEPTH OF FIELD VOLUME RAY CASTING 33 3.1 Fundamentals 33 3.1.1 Depth of Field 34 3.1.2 Camera Models 36 3.1.3 Direct Volume Rendering 42 3.2 Geometry Setup 48 3.3 Lens Sampling Strategy 53 3.3.1 Sampling Techniques 53 3.3.2 Disk Mapping 57 3.4 CoC-Based Multi-Pass Rendering 60 3.4.1 Progressive Lens Sample Sequence 60 3.4.2 Final Render Pass Determination 62 CHAPTER 4 GPU IMPLEMENTATION 66 4.1 Overview 66 4.2 Rendering Pipeline 67 4.3 Focal Plane Transformation 74 4.4 Lens Sample Transformation 76 CHAPTER 5 EXPERIMENTAL RESULTS 78 5.1 Number of Lens Samples 79 5.2 Number of Render Passes 82 5.3 Render Pass Parameter 84 5.4 Comparison with Previous Methods 87 CHAPTER 6 CONCLUSION 97 Bibliography 101 Appendix 111Docto

{3D} Morphable Face Models -- Past, Present and Future

In this paper, we provide a detailed survey of 3D Morphable Face Models over the 20 years since they were first proposed. The challenges in building and applying these models, namely capture, modeling, image formation, and image analysis, are still active research topics, and we review the state-of-the-art in each of these areas. We also look ahead, identifying unsolved challenges, proposing directions for future research and highlighting the broad range of current and future applications

Human motion convolutional autoencoders using different rotation representations

This research proposes the application of four different techniques of animation storage (Axis Angle, Quaternions, Rotation Matrices and Euler Angles), in order to determine the advantages and disadvantages of each method through the training and evaluation of autoencoders for reconstructing and denoising parsed data, when passing through a convolutional neural network. The designed autoencoders provide a novel insight into the comparative performance of these animation representation methods in an analog architecture, making them measurable in the same conditions, and thus possible to evaluate with quantitative metrics such as Minimum Square Error (MSE), and Root Mean Square Error (RMSE), as well as qualitatively through close observation of the naturality, its real-time performance after being decoded in full output sequences. My results show that the most accurate method for this purpose qualitatively is Quaternions, followed by Rotation Matrices, Euler Angles and finally with the least accurate results:e Axis Angles. These results persist in decoding and in simple encoding-decoding. Consistent denoising results were achieved in the representations, up until sequences with 25% of added gaussian noise

Essential techniques for laparoscopic surgery simulation

Laparoscopic surgery is a complex minimum invasive operation that requires long learning curve for the new trainees to have adequate experience to become a qualified surgeon. With the development of virtual reality technology, virtual reality-based surgery simulation is playing an increasingly important role in the surgery training. The simulation of laparoscopic surgery is challenging because it involves large non-linear soft tissue deformation, frequent surgical tool interaction and complex anatomical environment. Current researches mostly focus on very specific topics (such as deformation and collision detection) rather than a consistent and efficient framework. The direct use of the existing methods cannot achieve high visual/haptic quality and a satisfactory refreshing rate at the same time, especially for complex surgery simulation. In this paper, we proposed a set of tailored key technologies for laparoscopic surgery simulation, ranging from the simulation of soft tissues with different properties, to the interactions between surgical tools and soft tissues to the rendering of complex anatomical environment. Compared with the current methods, our tailored algorithms aimed at improving the performance from accuracy, stability and efficiency perspectives. We also abstract and design a set of intuitive parameters that can provide developers with high flexibility to develop their own simulators

ID.8: Co-Creating Visual Stories with Generative AI

Storytelling is an integral part of human culture and significantly impacts cognitive and socio-emotional development and connection. Despite the importance of interactive visual storytelling, the process of creating such content requires specialized skills and is labor-intensive. This paper introduces ID.8, an open-source system designed for the co-creation of visual stories with generative AI. We focus on enabling an inclusive storytelling experience by simplifying the content creation process and allowing for customization. Our user evaluation confirms a generally positive user experience in domains such as enjoyment and exploration, while highlighting areas for improvement, particularly in immersiveness, alignment, and partnership between the user and the AI system. Overall, our findings indicate promising possibilities for empowering people to create visual stories with generative AI. This work contributes a novel content authoring system, ID.8, and insights into the challenges and potential of using generative AI for multimedia content creation

The Effectiveness Of Virtual Humans Vs. Pre-recorded Humans In A Standardized Patient Performance Assessment

A Standardized Patient (SP) is a trained actor who portrays a particular illness to provide training to medical students and professionals. SPs primarily use written scripts and additional paper-based training for preparation of practical and board exams. Many institutions use various methods for training such as hiring preceptors for reenactment of scenarios, viewing archived videos, and computer based training. Currently, the training that is available can be enhanced to improve the level of quality of standardized patients. The following research is examining current processes in standardized patient training and investigating new methods for clinical skills education in SPs. The modality that is selected for training can possibly affect the performance of the actual SP case. This paper explains the results of a study that investigates if there is a difference in the results of an SP performance assessment. This difference can be seen when comparing a virtual human modality to that of a pre-recorded human modality for standardized patient training. The sample population navigates through an interactive computer based training module which provides informational content on what the roles of an SP are, training objectives, a practice session, and an interactive performance assessment with a simulated Virtual Human medical student. Half of the subjects interact with an animated virtual human medical student while the other half interacts with a pre-recorded human. The interactions from this assessment are audio-recorded, transcribed, and then graded to see how the two modalities compare. If the performance when using virtual humans for standardized patients is equal to or superior to pre-recorded humans, this can be utilized as a part task trainer that brings standardized patients to a higher level of effectiveness and standardization. In addition, if executed properly, this tool could potentially be used as a part task trainer which could provide savings in training time, resources, budget, and staff to military and civilian healthcare facilities

Engineering simulations for cancer systems biology

Computer simulation can be used to inform in vivo and in vitro experimentation, enabling rapid, low-cost hypothesis generation and directing experimental design in order to test those hypotheses. In this way, in silico models become a scientific instrument for investigation, and so should be developed to high standards, be carefully calibrated and their findings presented in such that they may be reproduced. Here, we outline a framework that supports developing simulations as scientific instruments, and we select cancer systems biology as an exemplar domain, with a particular focus on cellular signalling models. We consider the challenges of lack of data, incomplete knowledge and modelling in the context of a rapidly changing knowledge base. Our framework comprises a process to clearly separate scientific and engineering concerns in model and simulation development, and an argumentation approach to documenting models for rigorous way of recording assumptions and knowledge gaps. We propose interactive, dynamic visualisation tools to enable the biological community to interact with cellular signalling models directly for experimental design. There is a mismatch in scale between these cellular models and tissue structures that are affected by tumours, and bridging this gap requires substantial computational resource. We present concurrent programming as a technology to link scales without losing important details through model simplification. We discuss the value of combining this technology, interactive visualisation, argumentation and model separation to support development of multi-scale models that represent biologically plausible cells arranged in biologically plausible structures that model cell behaviour, interactions and response to therapeutic interventions