7 research outputs found
Parking functions, labeled trees and DCJ sorting scenarios
In genome rearrangement theory, one of the elusive questions raised in recent
years is the enumeration of rearrangement scenarios between two genomes. This
problem is related to the uniform generation of rearrangement scenarios, and
the derivation of tests of statistical significance of the properties of these
scenarios. Here we give an exact formula for the number of double-cut-and-join
(DCJ) rearrangement scenarios of co-tailed genomes. We also construct effective
bijections between the set of scenarios that sort a cycle and well studied
combinatorial objects such as parking functions and labeled trees.Comment: 12 pages, 3 figure
Generating functions for generating trees
Certain families of combinatorial objects admit recursive descriptions in
terms of generating trees: each node of the tree corresponds to an object, and
the branch leading to the node encodes the choices made in the construction of
the object. Generating trees lead to a fast computation of enumeration
sequences (sometimes, to explicit formulae as well) and provide efficient
random generation algorithms. We investigate the links between the structural
properties of the rewriting rules defining such trees and the rationality,
algebraicity, or transcendence of the corresponding generating function.Comment: This article corresponds, up to minor typo corrections, to the
article submitted to Discrete Mathematics (Elsevier) in Nov. 1999, and
published in its vol. 246(1-3), March 2002, pp. 29-5