Programming MPSoC platforms: Road works ahead

This paper summarizes a special session on multicore/multi-processor system-on-chip (MPSoC) programming challenges. The current trend towards MPSoC platforms in most computing domains does not only mean a radical change in computer architecture. Even more important from a SW developer´s viewpoint, at the same time the classical sequential von Neumann programming model needs to be overcome. Efficient utilization of the MPSoC HW resources demands for radically new models and corresponding SW development tools, capable of exploiting the available parallelism and guaranteeing bug-free parallel SW. While several standards are established in the high-performance computing domain (e.g. OpenMP), it is clear that more innovations are required for successful\ud deployment of heterogeneous embedded MPSoC. On the other hand, at least for coming years, the freedom for disruptive programming technologies is limited by the huge amount of certified sequential code that demands for a more pragmatic, gradual tool and code replacement strategy

Advances in Engineering Software for Multicore Systems

The vast amounts of data to be processed by today’s applications demand higher computational power. To meet application requirements and achieve reasonable application performance, it becomes increasingly profitable, or even necessary, to exploit any available hardware parallelism. For both new and legacy applications, successful parallelization is often subject to high cost and price. This chapter proposes a set of methods that employ an optimistic semi-automatic approach, which enables programmers to exploit parallelism on modern hardware architectures. It provides a set of methods, including an LLVM-based tool, to help programmers identify the most promising parallelization targets and understand the key types of parallelism. The approach reduces the manual effort needed for parallelization. A contribution of this work is an efficient profiling method to determine the control and data dependences for performing parallelism discovery or other types of code analysis. Another contribution is a method for detecting code sections where parallel design patterns might be applicable and suggesting relevant code transformations. Our approach efficiently reports detailed runtime data dependences. It accurately identifies opportunities for parallelism and the appropriate type of parallelism to use as task-based or loop-based

PYDAC: A DISTRIBUTED RUNTIME SYSTEM AND PROGRAMMING MODEL FOR A HETEROGENEOUS MANY-CORE ARCHITECTURE

Heterogeneous many-core architectures that consist of big, fast cores and small, energy-efficient cores are very promising for future high-performance computing (HPC) systems. These architectures offer a good balance between single-threaded perfor- mance and multithreaded throughput. Such systems impose challenges on the design of programming model and runtime system. Specifically, these challenges include (a) how to fully utilize the chip’s performance, (b) how to manage heterogeneous, un- reliable hardware resources, and (c) how to generate and manage a large amount of parallel tasks. This dissertation proposes and evaluates a Python-based programming framework called PyDac. PyDac supports a two-level programming model. At the high level, a programmer creates a very large number of tasks, using the divide-and-conquer strategy. At the low level, tasks are written in imperative programming style. The runtime system seamlessly manages the parallel tasks, system resilience, and inter- task communication with architecture support. PyDac has been implemented on both an field-programmable gate array (FPGA) emulation of an unconventional het- erogeneous architecture and a conventional multicore microprocessor. To evaluate the performance, resilience, and programmability of the proposed system, several micro-benchmarks were developed. We found that (a) the PyDac abstracts away task communication and achieves programmability, (b) the micro-benchmarks are scalable on the hardware prototype, but (predictably) serial operation limits some micro-benchmarks, and (c) the degree of protection versus speed could be varied in redundant threading that is transparent to programmers

The fast multipole method at exascale

This thesis presents a top to bottom analysis on designing and implementing fast algorithms for current and future systems. We present new analysis, algorithmic techniques, and implementations of the Fast Multipole Method (FMM) for solving N- body problems. We target the FMM because it is broadly applicable to a variety of scientific particle simulations used to study electromagnetic, fluid, and gravitational phenomena, among others. Importantly, the FMM has asymptotically optimal time complexity with guaranteed approximation accuracy. As such, it is among the most attractive solutions for scalable particle simulation on future extreme scale systems. We specifically address two key challenges. The first challenge is how to engineer fast code for today’s platforms. We present the first in-depth study of multicore op- timizations and tuning for FMM, along with a systematic approach for transforming a conventionally-parallelized FMM into a highly-tuned one. We introduce novel opti- mizations that significantly improve the within-node scalability of the FMM, thereby enabling high-performance in the face of multicore and manycore systems. The second challenge is how to understand scalability on future systems. We present a new algorithmic complexity analysis of the FMM that considers both intra- and inter- node communication costs. Using these models, we present results for choosing the optimal algorithmic tuning parameter. This analysis also yields the surprising prediction that although the FMM is largely compute-bound today, and therefore highly scalable on current systems, the trajectory of processor architecture designs, if there are no significant changes could cause it to become communication-bound as early as the year 2015. This prediction suggests the utility of our analysis approach, which directly relates algorithmic and architectural characteristics, for enabling a new kind of highlevel algorithm-architecture co-design. To demonstrate the scientific significance of FMM, we present two applications namely, direct simulation of blood which is a multi-scale multi-physics problem and large-scale biomolecular electrostatics. MoBo (Moving Boundaries) is the infrastruc- ture for the direct numerical simulation of blood. It comprises of two key algorithmic components of which FMM is one. We were able to simulate blood flow using Stoke- sian dynamics on 200,000 cores of Jaguar, a peta-flop system and achieve a sustained performance of 0.7 Petaflop/s. The second application we propose as future work in this thesis is biomolecular electrostatics where we solve for the electrical potential using the boundary-integral formulation discretized with boundary element methods (BEM). The computational kernel in solving the large linear system is dense matrix vector multiply which we propose can be calculated using our scalable FMM. We propose to begin with the two dielectric problem where the electrostatic field is cal- culated using two continuum dielectric medium, the solvent and the molecule. This is only a first step to solving biologically challenging problems which have more than two dielectric medium, ion-exclusion layers, and solvent filled cavities. Finally, given the difficulty in producing high-performance scalable code, productivity is a key concern. Recently, numerical algorithms are being redesigned to take advantage of the architectural features of emerging multicore processors. These new classes of algorithms express fine-grained asynchronous parallelism and hence reduce the cost of synchronization. We performed the first extensive performance study of a recently proposed parallel programming model, called Concurrent Collections (CnC). In CnC, the programmer expresses her computation in terms of application-specific operations, partially-ordered by semantic scheduling constraints. The CnC model is well-suited to expressing asynchronous-parallel algorithms, so we evaluate CnC using two dense linear algebra algorithms in this style for execution on state-of-the-art mul- ticore systems. Our implementations in CnC was able to match and in some cases even exceed competing vendor-tuned and domain specific library codes. We combine these two distinct research efforts by expressing FMM in CnC, our approach tries to marry performance with productivity that will be critical on future systems. Looking forward, we would like to extend this to distributed memory machines, specifically implement FMM in the new distributed CnC, distCnC to express fine-grained paral- lelism which would require significant effort in alternative models.Ph.D

Adaptive heterogeneous parallelism for semi-empirical lattice dynamics in computational materials science.

With the variability in performance of the multitude of parallel environments available today, the conceptual overhead created by the need to anticipate runtime information to make design-time decisions has become overwhelming. Performance-critical applications and libraries carry implicit assumptions based on incidental metrics that are not portable to emerging computational platforms or even alternative contemporary architectures. Furthermore, the significance of runtime concerns such as makespan, energy efficiency and fault tolerance depends on the situational context. This thesis presents a case study in the application of both Mattsons prescriptive pattern-oriented approach and the more principled structured parallelism formalism to the computational simulation of inelastic neutron scattering spectra on hybrid CPU/GPU platforms. The original ad hoc implementation as well as new patternbased and structured implementations are evaluated for relative performance and scalability. Two new structural abstractions are introduced to facilitate adaptation by lazy optimisation and runtime feedback. A deferred-choice abstraction represents a unified space of alternative structural program variants, allowing static adaptation through model-specific exhaustive calibration with regards to the extrafunctional concerns of runtime, average instantaneous power and total energy usage. Instrumented queues serve as mechanism for structural composition and provide a representation of extrafunctional state that allows realisation of a market-based decentralised coordination heuristic for competitive resource allocation and the Lyapunov drift algorithm for cooperative scheduling

Energy-Efficient Hardware-Accelerated Synchronization for Shared-L1-Memory Multiprocessor Clusters

The steeply growing performance demands for highly power- and energy-constrained processing systems such as end-nodes of the Internet-of-Things (IoT) have led to parallel near-threshold computing (NTC), joining the energy-efficiency benefits of low-voltage operation with the performance typical of parallel systems. Shared-L1-memory multiprocessor clusters are a promising architecture, delivering performance in the order of GOPS and over 100 GOPS/W of energy-efficiency. However, this level of computational efficiency can only be reached by maximizing the effective utilization of the processing elements (PEs) available in the clusters. Along with this effort, the optimization of PE-to-PE synchronization and communication is a critical factor for performance. In this article, we describe a light-weight hardware-accelerated synchronization and communication unit (SCU) for tightly-coupled clusters of processors. We detail the architecture, which enables fine-grain per-PE power management, and its integration into an eight-core cluster of RISC-V processors. To validate the effectiveness of the proposed solution, we implemented the eight-core cluster in advanced 22 nm FDX technology and evaluated performance and energy-efficiency with tunable microbenchmarks and a set of rea-life applications and kernels. The proposed solution allows synchronization-free regions as small as 42 cycles, over 41 smaller than the baseline implementation based on fast test-and-set access to L1 memory when constraining the microbenchmarks to 10 percent synchronization overhead. When evaluated on the real-life DSP-applications, the proposed SCU improves performance by up to 92 and 23 percent on average and energy efficiency by up to 98 and 39 percent on average

Energy-Aware Software Engineering

A great deal of energy in Information and Communication Technology (ICT) systems can be wasted by software, regardless of how energy-efficient the underlying hardware is. To avoid such waste, programmers need to understand the energy consumption of programs during the development process rather than waiting to measure energy after deployment. Such understanding is hindered by the large conceptual gap from hardware, where energy is consumed, to high-level languages and programming abstractions. The approaches described in this chapter involve two main topics: energy modelling and energy analysis. The purpose of modelling is to attribute energy values to programming constructs, whether at the level of machine instructions, intermediate code or source code. Energy analysis involves inferring the energy consumption of a program from the program semantics along with an energy model. Finally, the chapter discusses how energy analysis and modelling techniques can be incorporated in software engineering tools, including existing compilers, to assist the energy-aware programmer to optimise the energy consumption of code

Chapter Energy-Aware Software Engineering

Polystyrene (PS) is a petroleum‐based plastic made from styrene (vinyl benzene) monomer. Since it was first commercially produced in 1930, it has been used for a wide range of commercial, packaging and building purposes. In 2012, approximately 32.7 million tonnes of styrene were produced globally, and polystyrene is now a ubiquitous household item worldwide. In 1986, the US Environmental Protection Agency (EPA) announced that the polystyrene manufacturing process was the fifth largest source of hazardous waste. Styrene has been linked to adverse health effects in humans, and in 2014, it was listed as a possible carcinogen. Yet, despite mounting evidence and public concern regarding the toxicity of styrene, the product of the polymerisation of styrene, PS, is not considered hazardous. This chapter draws on a series of movements called the ‘new materialisms’ to attend to the relational, unstable and contingent nature of PS, monomers and other additives in diverse environments, and thus, we highlight the complexities involved in the categorisation of PS as ‘hazardous’ and the futility of demarcating PS as ‘household waste'. While local examples are drawn from the New Zealand context, the key messages are transferrable to most policy contexts and diverse geographical locations