Cross-Layer Rapid Prototyping and Synthesis of Application-Specific and Reconfigurable Many-accelerator Platforms

Technological advances of recent years laid the foundation consolidation of informatisationof society, impacting on economic, political, cultural and socialdimensions. At the peak of this realization, today, more and more everydaydevices are connected to the web, giving the term ”Internet of Things”. The futureholds the full connection and interaction of IT and communications systemsto the natural world, delimiting the transition to natural cyber systems and offeringmeta-services in the physical world, such as personalized medical care, autonomoustransportation, smart energy cities etc. . Outlining the necessities of this dynamicallyevolving market, computer engineers are required to implement computingplatforms that incorporate both increased systemic complexity and also cover awide range of meta-characteristics, such as the cost and design time, reliabilityand reuse, which are prescribed by a conflicting set of functional, technical andconstruction constraints. This thesis aims to address these design challenges bydeveloping methodologies and hardware/software co-design tools that enable therapid implementation and efficient synthesis of architectural solutions, which specifyoperating meta-features required by the modern market. Specifically, this thesispresents a) methodologies to accelerate the design flow for both reconfigurableand application-specific architectures, b) coarse-grain heterogeneous architecturaltemplates for processing and communication acceleration and c) efficient multiobjectivesynthesis techniques both at high abstraction level of programming andphysical silicon level.Regarding to the acceleration of the design flow, the proposed methodologyemploys virtual platforms in order to hide architectural details and drastically reducesimulation time. An extension of this framework introduces the systemicco-simulation using reconfigurable acceleration platforms as co-emulation intermediateplatforms. Thus, the development cycle of a hardware/software productis accelerated by moving from a vertical serial flow to a circular interactive loop.Moreover the simulation capabilities are enriched with efficient detection and correctiontechniques of design errors, as well as control methods of performancemetrics of the system according to the desired specifications, during all phasesof the system development. In orthogonal correlation with the aforementionedmethodological framework, a new architectural template is proposed, aiming atbridging the gap between design complexity and technological productivity usingspecialized hardware accelerators in heterogeneous systems-on-chip and networkon-chip platforms. It is presented a novel co-design methodology for the hardwareaccelerators and their respective programming software, including the tasks allocationto the available resources of the system/network. The introduced frameworkprovides implementation techniques for the accelerators, using either conventionalprogramming flows with hardware description language or abstract programmingmodel flows, using techniques from high-level synthesis. In any case, it is providedthe option of systemic measures optimization, such as the processing speed,the throughput, the reliability, the power consumption and the design silicon area.Finally, on addressing the increased complexity in design tools of reconfigurablesystems, there are proposed novel multi-objective optimization evolutionary algo-rithms which exploit the modern multicore processors and the coarse-grain natureof multithreaded programming environments (e.g. OpenMP) in order to reduce theplacement time, while by simultaneously grouping the applications based on theirintrinsic characteristics, the effectively explore the design space effectively.The efficiency of the proposed architectural templates, design tools and methodologyflows is evaluated in relation to the existing edge solutions with applicationsfrom typical computing domains, such as digital signal processing, multimedia andarithmetic complexity, as well as from systemic heterogeneous environments, suchas a computer vision system for autonomous robotic space navigation and manyacceleratorsystems for HPC and workstations/datacenters. The results strengthenthe belief of the author, that this thesis provides competitive expertise to addresscomplex modern - and projected future - design challenges.Οι τεχνολογικές εξελίξεις των τελευταίων ετών έθεσαν τα θεμέλια εδραίωσης της πληροφοριοποίησης της κοινωνίας, επιδρώντας σε οικονομικές,πολιτικές, πολιτιστικές και κοινωνικές διαστάσεις. Στο απόγειο αυτής τη ςπραγμάτωσης, σήμερα, ολοένα και περισσότερες καθημερινές συσκευές συνδέονται στο παγκόσμιο ιστό, αποδίδοντας τον όρο «Ίντερνετ των πραγμάτων».Το μέλλον επιφυλάσσει την πλήρη σύνδεση και αλληλεπίδραση των συστημάτων πληροφορικής και επικοινωνιών με τον φυσικό κόσμο, οριοθετώντας τη μετάβαση στα συστήματα φυσικού κυβερνοχώρου και προσφέροντας μεταυπηρεσίες στον φυσικό κόσμο όπως προσωποποιημένη ιατρική περίθαλψη, αυτόνομες μετακινήσεις, έξυπνες ενεργειακά πόλεις κ.α. . Σκιαγραφώντας τις ανάγκες αυτής της δυναμικά εξελισσόμενης αγοράς, οι μηχανικοί υπολογιστών καλούνται να υλοποιήσουν υπολογιστικές πλατφόρμες που αφενός ενσωματώνουν αυξημένη συστημική πολυπλοκότητα και αφετέρου καλύπτουν ένα ευρύ φάσμα μεταχαρακτηριστικών, όπως λ.χ. το κόστος σχεδιασμού, ο χρόνος σχεδιασμού, η αξιοπιστία και η επαναχρησιμοποίηση, τα οποία προδιαγράφονται από ένα αντικρουόμενο σύνολο λειτουργικών, τεχνολογικών και κατασκευαστικών περιορισμών. Η παρούσα διατριβή στοχεύει στην αντιμετώπιση των παραπάνω σχεδιαστικών προκλήσεων, μέσω της ανάπτυξης μεθοδολογιών και εργαλείων συνσχεδίασης υλικού/λογισμικού που επιτρέπουν την ταχεία υλοποίηση καθώς και την αποδοτική σύνθεση αρχιτεκτονικών λύσεων, οι οποίες προδιαγράφουν τα μετα-χαρακτηριστικά λειτουργίας που απαιτεί η σύγχρονη αγορά. Συγκεκριμένα, στα πλαίσια αυτής της διατριβής, παρουσιάζονται α) μεθοδολογίες επιτάχυνσης της ροής σχεδιασμού τόσο για επαναδιαμορφούμενες όσο και για εξειδικευμένες αρχιτεκτονικές, β) ετερογενή αδρομερή αρχιτεκτονικά πρότυπα επιτάχυνσης επεξεργασίας και επικοινωνίας και γ) αποδοτικές τεχνικές πολυκριτηριακής σύνθεσης τόσο σε υψηλό αφαιρετικό επίπεδο προγραμματισμού,όσο και σε φυσικό επίπεδο πυριτίου.Αναφορικά προς την επιτάχυνση της ροής σχεδιασμού, προτείνεται μια μεθοδολογία που χρησιμοποιεί εικονικές πλατφόρμες, οι οποίες αφαιρώντας τις αρχιτεκτονικές λεπτομέρειες καταφέρνουν να μειώσουν σημαντικά το χρόνο εξομοίωσης. Παράλληλα, εισηγείται η συστημική συν-εξομοίωση με τη χρήση επαναδιαμορφούμενων πλατφορμών, ως μέσων επιτάχυνσης. Με αυτόν τον τρόπο, ο κύκλος ανάπτυξης ενός προϊόντος υλικού, μετατεθειμένος από την κάθετη σειριακή ροή σε έναν κυκλικό αλληλεπιδραστικό βρόγχο, καθίσταται ταχύτερος, ενώ οι δυνατότητες προσομοίωσης εμπλουτίζονται με αποδοτικότερες μεθόδους εντοπισμού και διόρθωσης σχεδιαστικών σφαλμάτων, καθώς και μεθόδους ελέγχου των μετρικών απόδοσης του συστήματος σε σχέση με τις επιθυμητές προδιαγραφές, σε όλες τις φάσεις ανάπτυξης του συστήματος. Σε ορθογώνια συνάφεια με το προαναφερθέν μεθοδολογικό πλαίσιο, προτείνονται νέα αρχιτεκτονικά πρότυπα που στοχεύουν στη γεφύρωση του χάσματος μεταξύ της σχεδιαστικής πολυπλοκότητας και της τεχνολογικής παραγωγικότητας, με τη χρήση συστημάτων εξειδικευμένων επιταχυντών υλικού σε ετερογενή συστήματα-σε-ψηφίδα καθώς και δίκτυα-σε-ψηφίδα. Παρουσιάζεται κατάλληλη μεθοδολογία συν-σχεδίασης των επιταχυντών υλικού και του λογισμικού προκειμένου να αποφασισθεί η κατανομή των εργασιών στους διαθέσιμους πόρους του συστήματος/δικτύου. Το μεθοδολογικό πλαίσιο προβλέπει την υλοποίηση των επιταχυντών είτε με συμβατικές μεθόδους προγραμματισμού σε γλώσσα περιγραφής υλικού είτε με αφαιρετικό προγραμματιστικό μοντέλο με τη χρήση τεχνικών υψηλού επιπέδου σύνθεσης. Σε κάθε περίπτωση, δίδεται η δυνατότητα στο σχεδιαστή για βελτιστοποίηση συστημικών μετρικών, όπως η ταχύτητα επεξεργασίας, η ρυθμαπόδοση, η αξιοπιστία, η κατανάλωση ενέργειας και η επιφάνεια πυριτίου του σχεδιασμού. Τέλος, προκειμένου να αντιμετωπισθεί η αυξημένη πολυπλοκότητα στα σχεδιαστικά εργαλεία επαναδιαμορφούμενων συστημάτων, προτείνονται νέοι εξελικτικοί αλγόριθμοι πολυκριτηριακής βελτιστοποίησης, οι οποίοι εκμεταλλευόμενοι τους σύγχρονους πολυπύρηνους επεξεργαστές και την αδρομερή φύση των πολυνηματικών περιβαλλόντων προγραμματισμού (π.χ. OpenMP), μειώνουν το χρόνο επίλυσης του προβλήματος της τοποθέτησης των λογικών πόρων σε φυσικούς,ενώ ταυτόχρονα, ομαδοποιώντας τις εφαρμογές βάση των εγγενών χαρακτηριστικών τους, διερευνούν αποτελεσματικότερα το χώρο σχεδίασης.Η αποδοτικότητά των προτεινόμενων αρχιτεκτονικών προτύπων και μεθοδολογιών επαληθεύτηκε σε σχέση με τις υφιστάμενες λύσεις αιχμής τόσο σε αυτοτελής εφαρμογές, όπως η ψηφιακή επεξεργασία σήματος, τα πολυμέσα και τα προβλήματα αριθμητικής πολυπλοκότητας, καθώς και σε συστημικά ετερογενή περιβάλλοντα, όπως ένα σύστημα όρασης υπολογιστών για αυτόνομα διαστημικά ρομποτικά οχήματα και ένα σύστημα πολλαπλών επιταχυντών υλικού για σταθμούς εργασίας και κέντρα δεδομένων, στοχεύοντας εφαρμογές υψηλής υπολογιστικής απόδοσης (HPC). Τα αποτελέσματα ενισχύουν την πεποίθηση του γράφοντα, ότι η παρούσα διατριβή παρέχει ανταγωνιστική τεχνογνωσία για την αντιμετώπιση των πολύπλοκων σύγχρονων και προβλεπόμενα μελλοντικών σχεδιαστικών προκλήσεων

Embedded Machine Learning: Emphasis on Hardware Accelerators and Approximate Computing for Tactile Data Processing

Machine Learning (ML) a subset of Artificial Intelligence (AI) is driving the industrial and technological revolution of the present and future. We envision a world with smart devices that are able to mimic human behavior (sense, process, and act) and perform tasks that at one time we thought could only be carried out by humans. The vision is to achieve such a level of intelligence with affordable, power-efficient, and fast hardware platforms. However, embedding machine learning algorithms in many application domains such as the internet of things (IoT), prostheses, robotics, and wearable devices is an ongoing challenge. A challenge that is controlled by the computational complexity of ML algorithms, the performance/availability of hardware platforms, and the application\u2019s budget (power constraint, real-time operation, etc.). In this dissertation, we focus on the design and implementation of efficient ML algorithms to handle the aforementioned challenges. First, we apply Approximate Computing Techniques (ACTs) to reduce the computational complexity of ML algorithms. Then, we design custom Hardware Accelerators to improve the performance of the implementation within a specified budget. Finally, a tactile data processing application is adopted for the validation of the proposed exact and approximate embedded machine learning accelerators. The dissertation starts with the introduction of the various ML algorithms used for tactile data processing. These algorithms are assessed in terms of their computational complexity and the available hardware platforms which could be used for implementation. Afterward, a survey on the existing approximate computing techniques and hardware accelerators design methodologies is presented. Based on the findings of the survey, an approach for applying algorithmic-level ACTs on machine learning algorithms is provided. Then three novel hardware accelerators are proposed: (1) k-Nearest Neighbor (kNN) based on a selection-based sorter, (2) Tensorial Support Vector Machine (TSVM) based on Shallow Neural Networks, and (3) Hybrid Precision Binary Convolution Neural Network (BCNN). The three accelerators offer a real-time classification with monumental reductions in the hardware resources and power consumption compared to existing implementations targeting the same tactile data processing application on FPGA. Moreover, the approximate accelerators maintain a high classification accuracy with a loss of at most 5%

Performance Debugging Frameworks for FPGA High-Level Synthesis

Using high-level synthesis (HLS) tools for field-programmable gate array (FPGA) design is becoming an increasingly popular choice because HLS tools can generate a high-quality design in a short development time. However, current HLS tools still cannot adequately support users in understanding and fixing the performance issues of the current design. That is, current HLS tools lack in performance debugging capability. Previous work on performance debugging automates the process of inserting hardware monitors in low-level register-transfer level (RTL) languages which limits the comprehensibility of the obtained result. Instead, our HLS-based flows offer analysis on a function or loop level and provide more intuitive feedback that can be used to pinpoint the performance bottleneck of a design. In this dissertation, we present a collection of HLS-based debugging frameworks for various purposes and characteristics of the design. First, we address the problem in the HLS synthesis step, where an inaccurate cycle estimation is provided if the program has input-dependent behavior. We propose a new performance estimator that automatically instruments code that models the hardware execution behavior and interprets the information from the HLS software simulation. However, the performance estimation result of this flow may not be accurate for a type of designs that cannot be simulated correctly by existing HLS software simulators. To handle such cases, we propose a new software simulator that provides cycle-accurate result based on the HLS scheduling information. If the input dataset is not available for software simulation or high-level models do not exist for all components of the FPGA design, we also present an on-board monitoring flow for automated cycle extraction and stall analysis. Finally, we address the needs of HLS programmers to automatically find the best set of directives for FPGA designs. We propose a design space exploration (DSE) framework to optimize applications with variable loop bounds in Polybench benchmark. A quantitative comparison among the proposed frameworks is shown using the sparse matrix-vector multiplication benchmark

Combining dynamic and static scheduling in high-level synthesis

Field Programmable Gate Arrays (FPGAs) are starting to become mainstream devices for custom computing, particularly deployed in data centres. However, using these FPGA devices requires familiarity with digital design at a low abstraction level. In order to enable software engineers without a hardware background to design custom hardware, high-level synthesis (HLS) tools automatically transform a high-level program, for example in C/C++, into a low-level hardware description. A central task in HLS is scheduling: the allocation of operations to clock cycles. The classic approach to scheduling is static, in which each operation is mapped to a clock cycle at compile time, but recent years have seen the emergence of dynamic scheduling, in which an operation’s clock cycle is only determined at run-time. Both approaches have their merits: static scheduling can lead to simpler circuitry and more resource sharing, while dynamic scheduling can lead to faster hardware when the computation has a non-trivial control flow. This thesis proposes a scheduling approach that combines the best of both worlds. My idea is to use existing program analysis techniques in software designs, such as probabilistic analysis and formal verification, to optimize the HLS hardware. First, this thesis proposes a tool named DASS that uses a heuristic-based approach to identify the code regions in the input program that are amenable to static scheduling and synthesises them into statically scheduled components, also known as static islands, leaving the top-level hardware dynamically scheduled. Second, this thesis addresses a problem of this approach: that the analysis of static islands and their dynamically scheduled surroundings are separate, where one treats the other as black boxes. We apply static analysis including dependence analysis between static islands and their dynamically scheduled surroundings to optimize the offsets of static islands for high performance. We also apply probabilistic analysis to estimate the performance of the dynamically scheduled part and use this information to optimize the static islands for high area efficiency. Finally, this thesis addresses the problem of conservatism in using sequential control flow designs which can limit the throughput of the hardware. We show this challenge can be solved by formally proving that certain control flows can be safely parallelised for high performance. This thesis demonstrates how to use automated formal verification to find out-of-order loop pipelining solutions and multi-threading solutions from a sequential program.Open Acces

FPGAs for the Masses: Affordable Hardware Synthesis from Domain-Specific Languages

Field Programmable Gate Arrays (FPGAs) have the unique ability to be configured into application-specific architectures that are well suited to specific computing problems. This enables them to achieve performances and energy efficiencies that outclass other processor-based architectures, such as Chip Multiprocessors (CMPs), Graphic Processing Units (GPUs) and Digital Signal Processors (DSPs). Despite this, FPGAs are yet to gain widespread adoption, especially among application and software developers, because of their laborious application development process that requires hardware design expertise. In some application areas, domain-specific hardware synthesis tools alleviate this problem by using a Domain-Specific Language (DSL) to hide the low-level hardware details and also improve productivity of the developer. Additionally, these tools leverage domain knowledge to perform optimizations and produce high-quality hardware designs. While this approach holds great promise, the significant effort and cost of developing such domain-specific tools make it unaffordable in many application areas. In this thesis, we develop techniques to reduce the effort and cost of developing domain-specific hardware synthesis tools. To demonstrate our approach, we develop a toolchain to generate complete hardware systems from high-level functional specifications written in a DSL. Firstly, our approach uses language embedding and type-directed staging to develop a DSL and compiler in a cost-effective manner. To further reduce effort, we develop this compiler by composing reusable optimization modules, and integrate it with existing hardware synthesis tools. However, most synthesis tools require users to have hardware design knowledge to produce high-quality results. Therefore, secondly, to facilitate people without hardware design skills to develop domain-specific tools, we develop a methodology to generate high-quality hardware designs from well known computational patterns, such as map, zipWith, reduce and foreach; computational patterns are algorithmic methods that capture the nature of computation and communication and can be easily understood and used without expert knowledge. In our approach, we decompose the DSL specifications into constituent computational patterns and exploit the properties of these patterns, such as degree of parallelism, interdependence between operations and data-access characteristics, to generate high-quality hardware modules to implement them, and compose them into a complete system design. Lastly, we extended our methodology to automatically parallelize computations across multiple hardware modules to benefit from the spatial parallelism of the FPGA as well as overcome performance problems caused by non-sequential data access patterns and long access latency to external memory. To achieve this, we utilize the data-access properties of the computational patterns to automatically identify synchronization requirements and generate such multi-module designs from the same high-level functional specifications. Driven by power and performance constraints, today the world is turning to reconfigurable technology (i.e., FPGAs) to meet the computational needs of tomorrow. In this light, this work addresses the cardinal problem of making tomorrow's computing infrastructure programmable to application developers

A Survey of FPGA Optimization Methods for Data Center Energy Efficiency

This article provides a survey of academic literature about field programmable gate array (FPGA) and their utilization for energy efficiency acceleration in data centers. The goal is to critically present the existing FPGA energy optimization techniques and discuss how they can be applied to such systems. To do so, the article explores current energy trends and their projection to the future with particular attention to the requirements set out by the European Code of Conduct for Data Center Energy Efficiency. The article then proposes a complete analysis of over ten years of research in energy optimization techniques, classifying them by purpose, method of application, and impacts on the sources of consumption. Finally, we conclude with the challenges and possible innovations we expect for this sector.Comment: Accepted for publication in IEEE Transactions on Sustainable Computin

Modelling and characterisation of distributed hardware acceleration

Hardware acceleration has become more commonly utilised in networked computing systems. The growing complexity of applications mean that traditional CPU architectures can no longer meet stringent latency constraints. Alternative computing architectures such as GPUs and FPGAs are increasingly available, along with simpler, more software-like development flows. The work presented in this thesis characterises the overheads associated with these accelerator architectures. A holistic view encompassing both computation and communication latency must be considered. Experimental results obtained through this work show that networkattached accelerators scale better than server-hosted deployments, and that host ingestion overheads are comparable to network traversal times in some cases. Along with the choice of processing platforms, it is becoming more important to consider how workloads are partitioned and where in the network tasks are being performed. Manual allocation and evaluation of tasks to network nodes does not scale with network and workload complexity. A mathematical formulation of this problem is presented within this thesis that takes into account all relevant performance metrics. Unlike other works, this model takes into account growing hardware heterogeneity and workload complexity, and is generalisable to a range of scenarios. This model can be used in an optimisation that generates lower cost results with latency performance close to theoretical maximums compared to naive placement approaches. With the mathematical formulation and experimental results that characterise hardware accelerator overheads, the work presented in this thesis can be used to make informed design decisions about both where to allocate tasks and deploy accelerators in the network, and the associated costs

Hardware acceleration using FPGAs for adaptive radiotherapy

Adaptive radiotherapy (ART) seeks to improve the accuracy of radiotherapy by adapting the treatment based on up-to-date images of the patient's anatomy captured at the time of treatment delivery. The amount of image data, combined with the clinical time requirements for ART, necessitates automatic image analysis to adapt the treatment plan. Currently, the computational effort of the image processing and plan adaptation means they cannot be completed in a clinically acceptable timeframe. This thesis aims to investigate the use of hardware acceleration on Field Programmable Gate Arrays (FPGAs) to accelerate algorithms for segmenting bony anatomy in Computed Tomography (CT) scans, to reduce the plan adaptation time for ART. An assessment was made of the overhead incurred by transferring image data to an FPGA-based hardware accelerator using the industry-standard DICOM protocol over an Ethernet connection. The rate was found to be likely to limit the performanceof hardware accelerators for ART, highlighting the need for an alternative method of integrating hardware accelerators with existing radiotherapy equipment. A clinically-validated segmentation algorithm was adapted for implementation in hardware. This was shown to process three-dimensional CT images up to 13.81 times faster than the original software implementation. The segmentations produced by the two implementations showed strong agreement. Modifications to the hardware implementation were proposed for segmenting fourdimensional CT scans. This was shown to process image volumes 14.96 times faster than the original software implementation, and the segmentations produced by the two implementations showed strong agreement in most cases.A second, novel, method for segmenting four-dimensional CT data was also proposed. The hardware implementation executed 1.95 times faster than the software implementation. However, the algorithm was found to be unsuitable for the global segmentation task examined here, although it may be suitable as a refining segmentation in the context of a larger ART algorithm.Adaptive radiotherapy (ART) seeks to improve the accuracy of radiotherapy by adapting the treatment based on up-to-date images of the patient's anatomy captured at the time of treatment delivery. The amount of image data, combined with the clinical time requirements for ART, necessitates automatic image analysis to adapt the treatment plan. Currently, the computational effort of the image processing and plan adaptation means they cannot be completed in a clinically acceptable timeframe. This thesis aims to investigate the use of hardware acceleration on Field Programmable Gate Arrays (FPGAs) to accelerate algorithms for segmenting bony anatomy in Computed Tomography (CT) scans, to reduce the plan adaptation time for ART. An assessment was made of the overhead incurred by transferring image data to an FPGA-based hardware accelerator using the industry-standard DICOM protocol over an Ethernet connection. The rate was found to be likely to limit the performanceof hardware accelerators for ART, highlighting the need for an alternative method of integrating hardware accelerators with existing radiotherapy equipment. A clinically-validated segmentation algorithm was adapted for implementation in hardware. This was shown to process three-dimensional CT images up to 13.81 times faster than the original software implementation. The segmentations produced by the two implementations showed strong agreement. Modifications to the hardware implementation were proposed for segmenting fourdimensional CT scans. This was shown to process image volumes 14.96 times faster than the original software implementation, and the segmentations produced by the two implementations showed strong agreement in most cases.A second, novel, method for segmenting four-dimensional CT data was also proposed. The hardware implementation executed 1.95 times faster than the software implementation. However, the algorithm was found to be unsuitable for the global segmentation task examined here, although it may be suitable as a refining segmentation in the context of a larger ART algorithm