A multi-resolution image reconstruction method in X-ray computed tomography

International audienceWe propose a multiresolution X-ray imaging method designed for non-destructive testing/ evaluation (NDT/NDE) applications which can also be used for small animal imaging studies. Two sets of projections taken at different magnifications are combined and a multiresolution image is reconstructed. A geometrical relation is introduced in order to combine properly the two sets of data and the processing using wavelet transforms is described. The accuracy of the reconstruction procedure is verified through a comparison to the standard filtered backprojection (FBP) algorithm on simulated data

Mathematical Methods in Tomography

This is the seventh Oberwolfach conference on the mathematics of tomography, the first one taking place in 1980. Tomography is the most popular of a series of medical and scientific imaging techniques that have been developed since the mid seventies of the last century

Deep learning-based diagnostic system for malignant liver detection

Cancer is the second most common cause of death of human beings, whereas liver cancer is the fifth most common cause of mortality. The prevention of deadly diseases in living beings requires timely, independent, accurate, and robust detection of ailment by a computer-aided diagnostic (CAD) system. Executing such intelligent CAD requires some preliminary steps, including preprocessing, attribute analysis, and identification. In recent studies, conventional techniques have been used to develop computer-aided diagnosis algorithms. However, such traditional methods could immensely affect the structural properties of processed images with inconsistent performance due to variable shape and size of region-of-interest. Moreover, the unavailability of sufficient datasets makes the performance of the proposed methods doubtful for commercial use. To address these limitations, I propose novel methodologies in this dissertation. First, I modified a generative adversarial network to perform deblurring and contrast adjustment on computed tomography (CT) scans. Second, I designed a deep neural network with a novel loss function for fully automatic precise segmentation of liver and lesions from CT scans. Third, I developed a multi-modal deep neural network to integrate pathological data with imaging data to perform computer-aided diagnosis for malignant liver detection. The dissertation starts with background information that discusses the proposed study objectives and the workflow. Afterward, Chapter 2 reviews a general schematic for developing a computer-aided algorithm, including image acquisition techniques, preprocessing steps, feature extraction approaches, and machine learning-based prediction methods. The first study proposed in Chapter 3 discusses blurred images and their possible effects on classification. A novel multi-scale GAN network with residual image learning is proposed to deblur images. The second method in Chapter 4 addresses the issue of low-contrast CT scan images. A multi-level GAN is utilized to enhance images with well-contrast regions. Thus, the enhanced images improve the cancer diagnosis performance. Chapter 5 proposes a deep neural network for the segmentation of liver and lesions from abdominal CT scan images. A modified Unet with a novel loss function can precisely segment minute lesions. Similarly, Chapter 6 introduces a multi-modal approach for liver cancer variants diagnosis. The pathological data are integrated with CT scan images to diagnose liver cancer variants. In summary, this dissertation presents novel algorithms for preprocessing and disease detection. Furthermore, the comparative analysis validates the effectiveness of proposed methods in computer-aided diagnosis

Nonseparable wavelet-based cone-beam reconstruction in 3-d rotational angiography

International audienceWe propose a new wavelet-based reconstruction method suited to three-dimensional (3-D) cone-beam (CB) tomography. It is derived from the Feldkamp algorithm and is valid for the same geometrical conditions. The demonstration is done in the framework of nonseparable wavelets and requires ideally radial wavelets. The proposed inversion formula yields to a filtered backprojection algorithm but the filtering step is implemented using quincunx wavelet filters. The proposed algorithm reconstructs slice by slice both the wavelet and approximation coefficients of the 3-D image directly from the CB projection data. The validity of this multiresolution approach is demonstrated on simulations from both mathematical phantoms and 3-D rotational angiography clinical data. The same quality is achieved compared with the standard Feldkamp algorithm, but in addition, the multiresolution decomposition allows one to apply directly image processing techniques in the wavelet domain during the inversion process. As an example, a fast low-resolution reconstruction of the 3-D arterial vessels with the progressive addition of details in a region of interest is demonstrated. Other promising applications are the improvement of image quality by denoising techniques and also the reduction of computing time using the space localization of wavelets

Étude de corrélats électrophysiologiques pour la discrimination d'états de fatigue et de charge mentale : apports pour les interfaces cerveau-machine passives

Mental state estimation on the basis of cerebral activity and its resulting physiological activities has become a challenge for passive Brain-Computer Interfaces (BCI), in particular to address a need in neuroergonomics. This thesis work focuses on mental fatigue and workload estimation. Its purpose is to provide efficient and realistic processing chains. Thus, one issue was the modulation of workload markers as well as classification performance robustness depending on time-on-task (TOT). The impact of workload and TOT on attentional state markers was also assessed. For those purposes, an experimental protocol was implemented to collect the electroencephalographic (EEG), cardiac (ECG) and ocular (EOG) signals from healthy volunteers as they performed for a prolonged period of time a task that mixes working memory load and selective attention. Efficient signal processing chains that include spatial filtering and classification steps were designed in order to better estimate these mental states. The relevance of several electrophysiological markers was compared, among which spontaneous EEG activity and event-related potentials (ERPs), as well as various preprocessing steps such as spatial filtering methods for ERPs. Interaction effects between mental states were brought to light. In particular, TOT negatively impacted mental workload estimation when using power features. However, the chain based on ERPs was robust to this effect. A comparison of the type of stimuli that can be used to elicit the ERPs revealed that task-independent probes still allow very high performance, which shows their relevance for real-life implementation. Lastly, ongoing work that aims at assessing task-robust workload markers, as well as the usefulness of auditory ERPs in a single-stimulus paradigm will be presented as prospects.L'estimation de l'état mental d'un individu sur la base de son activité cérébrale et de ses activités physiologiques résultantes est devenue l'un des challenges des interfaces cerveau-machine (ICM) dites passives, dans le but notamment de répondre à un besoin en neuroergonomie. Ce travail de thèse se focalise sur l'estimation des états de fatigue et de charge mentale. Son objectif est de proposer des chaines de traitement efficaces et réalistes dans leur mise en œuvre. Ainsi, un des points à l'étude a été la modulation des indicateurs de charge ainsi que la robustesse des performances de classification en fonction du temps passé sur une tâche (TPT). L'impact de la charge et du TPT sur les marqueurs d'état attentionnel a aussi été évalué. Pour ce faire, un protocole expérimental a été mis en œuvre afin de recueillir les signaux électro-encéphalographiques (EEG), cardiaques (ECG) et oculaires (EOG) de participants volontaires sains lors de la réalisation prolongée d'une tâche combinant charge en mémoire de travail et attention sélective. Des chaînes de traitement performantes incluant une étape de filtrage spatial et une classification supervisée ont été mises en place afin de classer au mieux ces états. La pertinence de plusieurs marqueurs électrophysiologiques a été comparée, notamment l'activité EEG spontanée et les potentiels évoqués (PEs), ainsi que différentes étapes de prétraitement dont les méthodes de filtrage spatial pour PEs. Des effets d'interactions ont été mis au jour entre les différents états mentaux, dont un effet négatif du TPT sur les performances en classification de la charge mentale lorsque l'on utilise des marqueurs mesurant la puissance moyenne de l'EEG dans des bandes de fréquence d'intérêt. La chaîne basée sur les PEs est en revanche robuste à cet effet. Une comparaison du type de stimuli utilisables pour éliciter les PEs a révélé que des stimuli tâche-indépendants permettent tout de même d'obtenir des performances très élevées, ce qui montre leur pertinence pour une implémentation en situation réelle. En perspective seront présentés des travaux en cours visant à mettre en évidence des marqueurs de charge mentale robustes à la tâche, ainsi que l'utilité des potentiels évoqués auditifs en paradigme de simple stimulus