Rigid Mixin Modules

International audienceMixin modules are a notion of modules that allows cross-module recursion and late binding, two features missing in ML-style modules. They have been well defined in a call-by-name setting, but in a call-by-value setting, they tend to conflict with the usual static restrictions on recursive definitions. Moreover, the semantics of instantiation has to specify an order of evaluation, which involves a difficult design choice. Previous proposals rely on the dependencies between components to compute a valid order of evaluation. In such systems, mixin module types must carry some information on the dependencies between their components, which makes them verbose. In this paper, we propose a new, simpler design for mixin modules in a call-by-value setting, which avoids this problem

Architectural Refactoring for Fast and Modular Bioinformatics Sequence Search

Bioinformaticists use the Basic Local Alignment Search Tool (BLAST) to characterize an unknown sequence by comparing it against a database of known sequences, thus detecting evolutionary relationships and biological properties. mpiBLAST is a widely-used, high-performance, open-source parallelization of BLAST that runs on a computer cluster delivering super-linear speedups. However, the Achilles heel of mpiBLAST is its lack of modularity, adversely affecting maintainability and extensibility; an effective architectural refactoring will benefit both users and developers. This paper describes our experiences in the architectural refactoring of mpiBLAST into a modular, high-performance software package. Our evaluation of five component-oriented designs culminated in a design that enables modularity while retaining high-performance. Furthermore, we achieved this refactoring effectively and efficiently using eXtreme Programming techniques. These experiences will be of value to software engineers faced with the challenge of creating maintainable and extensible, high-performance, bioinformatics software

Collected Software Engineering Papers, Volume 10

This document is a collection of selected technical papers produced by participants in the Software Engineering Laboratory (SEL) from Oct. 1991 - Nov. 1992. The purpose of the document is to make available, in one reference, some results of SEL research that originally appeared in a number of different forums. Although these papers cover several topics related to software engineering, they do not encompass the entire scope of SEL activities and interests. Additional information about the SEL and its research efforts may be obtained from the sources listed in the bibliography at the end of this document. For the convenience of this presentation, the 11 papers contained here are grouped into 5 major sections: (1) the Software Engineering Laboratory; (2) software tools studies; (3) software models studies; (4) software measurement studies; and (5) Ada technology studies

Ginkgo: A Modern Linear Operator Algebra Framework for High Performance Computing

© ACM, YYYY. This is the author's version of the work "Anzt, H., Cojean, T., Flegar, G., Göbel, F., Grützmacher, T., Nayak, P., ... & Quintana-Ortí, E. S. (2022). Ginkgo: A modern linear operator algebra framework for high performance computing. ACM Transactions on Mathematical Software (TOMS), 48(1), 1-33". It is posted here by permission of ACM for your personal use. Not for redistribution. The definitive version was published in ACM Transactions on Mathematical Software, {VOL48, ISS 1, (MAR 2022)} http://doi.acm.org/10.1145/3480935"[EN] In this article, we present GINKGO, a modern C++ math library for scientific high performance computing. While classical linear algebra libraries act on matrix and vector objects, Gnswo's design principle abstracts all functionality as linear operators," motivating the notation of a "linear operator algebra library" GINKGO'S current focus is oriented toward providing sparse linear algebra functionality for high performance graphics processing unit (GPU) architectures, but given the library design, this focus can be easily extended to accommodate other algorithms and hardware architectures. We introduce this sophisticated software architecture that separates core algorithms from architecture-specific backends and provide details on extensibility and sustainability measures. We also demonstrate GINKGO'S usability by providing examples on how to use its functionality inside the MFEM and deal.ii finite element ecosystems. Finally, we offer a practical demonstration of GINKGO'S high performance on state-of-the-art GPU architectures.This work was supported by the "Impuls und Vernetzungsfond of the Helmholtz Association" under grant VH-NG-1241. G. Flegar and E. S. Quintana-Orti were supported by project TIN2017-82972-R of the MINECO and FEDER and the H2020 EU FETHPC Project 732631 "OPRECOMP". This researchwas also supported by the Exascale Computing Project (17-SC-20-SC), a collaborative effort of the U.S. Department of Energy Office of Science and the National Nuclear Security Administration. The experiments on the NVIDIA A100 GPU were performed on the HAICORE@KIT partition, funded by the "Impuls und Vernetzungsfond" of the Helmholtz Association. The experiments on the AMD MI100 GPU were performed on Tulip, an early-access platform hosted by HPE.Anzt, H.; Cojean, T.; Flegar, G.; Göbel, F.; Grützmacher, T.; Nayak, P.; Ribizel, T.... (2022). Ginkgo: A Modern Linear Operator Algebra Framework for High Performance Computing. ACM Transactions on Mathematical Software. 48(1):1-33. https://doi.org/10.1145/348093513348

Integrating independent components with on-demand remodularization

This paper proposes language concepts that facilitate the separation of an application into independent reusable building blocks and the integration of pre-build generic software components into applications that have been developed by third party vendors. A key element of our approach are on-demand remodularizations, meaning that the abstractions and vocabulary of an existing code base are translated into the vocabulary understood by a set of components that are connected by a common collaboration interface. This general concept allows us to mix-and-match remodularizations and components on demand

Non-reformist reform for Haskell Modularity

In this thesis, I present Backpack, a new language for building separately-typecheckable packages on top of a weak module system like Haskell’s. The design of Backpack is the first to bring the rich world of type systems to the practical world of packages via mixin modules. It’s inspired by the MixML module calculus of Rossberg and Dreyer but by choosing practicality over expressivity Backpack both simplifies that semantics and supports a flexible notion of applicative instantiation. Moreover, this design is motivated less by foundational concerns and more by the practical concern of integration into Haskell. The result is a new approach to writing modular software at the scale of packages.Modulsysteme wie die in Haskell erlauben nur eine weiche Art der Modularität, in dem Modulimplementierungen direkt von anderen Implementierungen abhängen und in dieser Abhängigkeitsreihenfolge verarbeitet werden müssen. Modulsysteme wie die in ML andererseits erlauben eine kräftige Art der Modularität, in dem explizite Schnittstellen Vermutungen über Abhängigkeiten ausdrücken und jeder Modultyp überprüft und unabhängig ergründet werden kann. In dieser Dissertation präsentiere ich Backpack, eine neue Sprache zur Entwicklung separattypenüberprüfbarer Pakete über einem weichen Modulsystem wie Haskells. Das Design von Backpack überführt erstmalig die reichhaltige Welt der Typsysteme in die praktische Welt der Pakete durch Mixin-Module. Es wird von der MixML-Kalkulation von Rossberg und Dreyer angeregt. Backpack vereinfacht allerdings diese Semantik durch die Auswahl von Anwendbarkeit statt Expressivität und fördert eine flexible Art von geeigneter Applicative- Instantiierung. Zudem wird dieses Design weniger von grundlegenden Anliegen als von dem praktischen Anliegen der Eingliederung in Haskell begründet. Die Semantik von Backpack wird durch die Ausarbeitung in Mengen von Haskell-Modulen und „binary interface files“ definiert, und zeigt so, wie Backpack Interoperabilität mit Haskell erhält, während Backpack es mit Schnittstellen nachrüstet. In meiner Formalisierung Backpacks präsentiere ich ein neuartiges Typsystem für Haskellmodule und überprüfe einen entscheidenen Korrektheitssatz, um die Semantik von Backpack zu validieren.Max Planck Institute for Software Systems (MPI-SWS

Collected software engineering papers, volume 12

This document is a collection of selected technical papers produced by participants in the Software Engineering Laboratory (SEL) from November 1993 through October 1994. The purpose of the document is to make available, in one reference, some results of SEL research that originally appeared in a number of different forums. This is the 12th such volume of technical papers produced by the SEL. Although these papers cover several topics related to software engineering, they do not encompass the entire scope of SEL activities and interests. Additional information about the SEL and its research efforts may be obtained from the sources listed in the bibliography at the end of this document