841 research outputs found
Automatic Pulmonary Nodule Detection in CT Scans Using Convolutional Neural Networks Based on Maximum Intensity Projection
Accurate pulmonary nodule detection is a crucial step in lung cancer
screening. Computer-aided detection (CAD) systems are not routinely used by
radiologists for pulmonary nodule detection in clinical practice despite their
potential benefits. Maximum intensity projection (MIP) images improve the
detection of pulmonary nodules in radiological evaluation with computed
tomography (CT) scans. Inspired by the clinical methodology of radiologists, we
aim to explore the feasibility of applying MIP images to improve the
effectiveness of automatic lung nodule detection using convolutional neural
networks (CNNs). We propose a CNN-based approach that takes MIP images of
different slab thicknesses (5 mm, 10 mm, 15 mm) and 1 mm axial section slices
as input. Such an approach augments the two-dimensional (2-D) CT slice images
with more representative spatial information that helps discriminate nodules
from vessels through their morphologies. Our proposed method achieves
sensitivity of 92.67% with 1 false positive per scan and sensitivity of 94.19%
with 2 false positives per scan for lung nodule detection on 888 scans in the
LIDC-IDRI dataset. The use of thick MIP images helps the detection of small
pulmonary nodules (3 mm-10 mm) and results in fewer false positives.
Experimental results show that utilizing MIP images can increase the
sensitivity and lower the number of false positives, which demonstrates the
effectiveness and significance of the proposed MIP-based CNNs framework for
automatic pulmonary nodule detection in CT scans. The proposed method also
shows the potential that CNNs could gain benefits for nodule detection by
combining the clinical procedure.Comment: Submitted to IEEE TM
An Interpretable Deep Hierarchical Semantic Convolutional Neural Network for Lung Nodule Malignancy Classification
While deep learning methods are increasingly being applied to tasks such as
computer-aided diagnosis, these models are difficult to interpret, do not
incorporate prior domain knowledge, and are often considered as a "black-box."
The lack of model interpretability hinders them from being fully understood by
target users such as radiologists. In this paper, we present a novel
interpretable deep hierarchical semantic convolutional neural network (HSCNN)
to predict whether a given pulmonary nodule observed on a computed tomography
(CT) scan is malignant. Our network provides two levels of output: 1) low-level
radiologist semantic features, and 2) a high-level malignancy prediction score.
The low-level semantic outputs quantify the diagnostic features used by
radiologists and serve to explain how the model interprets the images in an
expert-driven manner. The information from these low-level tasks, along with
the representations learned by the convolutional layers, are then combined and
used to infer the high-level task of predicting nodule malignancy. This unified
architecture is trained by optimizing a global loss function including both
low- and high-level tasks, thereby learning all the parameters within a joint
framework. Our experimental results using the Lung Image Database Consortium
(LIDC) show that the proposed method not only produces interpretable lung
cancer predictions but also achieves significantly better results compared to
common 3D CNN approaches
A Survey on Deep Learning in Medical Image Analysis
Deep learning algorithms, in particular convolutional networks, have rapidly
become a methodology of choice for analyzing medical images. This paper reviews
the major deep learning concepts pertinent to medical image analysis and
summarizes over 300 contributions to the field, most of which appeared in the
last year. We survey the use of deep learning for image classification, object
detection, segmentation, registration, and other tasks and provide concise
overviews of studies per application area. Open challenges and directions for
future research are discussed.Comment: Revised survey includes expanded discussion section and reworked
introductory section on common deep architectures. Added missed papers from
before Feb 1st 201
Computer-aided diagnosis of lung nodule using gradient tree boosting and Bayesian optimization
We aimed to evaluate computer-aided diagnosis (CADx) system for lung nodule
classification focusing on (i) usefulness of gradient tree boosting (XGBoost)
and (ii) effectiveness of parameter optimization using Bayesian optimization
(Tree Parzen Estimator, TPE) and random search. 99 lung nodules (62 lung
cancers and 37 benign lung nodules) were included from public databases of CT
images. A variant of local binary pattern was used for calculating feature
vectors. Support vector machine (SVM) or XGBoost was trained using the feature
vectors and their labels. TPE or random search was used for parameter
optimization of SVM and XGBoost. Leave-one-out cross-validation was used for
optimizing and evaluating the performance of our CADx system. Performance was
evaluated using area under the curve (AUC) of receiver operating characteristic
analysis. AUC was calculated 10 times, and its average was obtained. The best
averaged AUC of SVM and XGBoost were 0.850 and 0.896, respectively; both were
obtained using TPE. XGBoost was generally superior to SVM. Optimal parameters
for achieving high AUC were obtained with fewer numbers of trials when using
TPE, compared with random search. In conclusion, XGBoost was better than SVM
for classifying lung nodules. TPE was more efficient than random search for
parameter optimization.Comment: 29 pages, 4 figure
Towards automatic pulmonary nodule management in lung cancer screening with deep learning
The introduction of lung cancer screening programs will produce an
unprecedented amount of chest CT scans in the near future, which radiologists
will have to read in order to decide on a patient follow-up strategy. According
to the current guidelines, the workup of screen-detected nodules strongly
relies on nodule size and nodule type. In this paper, we present a deep
learning system based on multi-stream multi-scale convolutional networks, which
automatically classifies all nodule types relevant for nodule workup. The
system processes raw CT data containing a nodule without the need for any
additional information such as nodule segmentation or nodule size and learns a
representation of 3D data by analyzing an arbitrary number of 2D views of a
given nodule. The deep learning system was trained with data from the Italian
MILD screening trial and validated on an independent set of data from the
Danish DLCST screening trial. We analyze the advantage of processing nodules at
multiple scales with a multi-stream convolutional network architecture, and we
show that the proposed deep learning system achieves performance at classifying
nodule type that surpasses the one of classical machine learning approaches and
is within the inter-observer variability among four experienced human
observers.Comment: Published on Scientific Report
Deep-learning framework to detect lung abnormality - A study with chest X-Ray and lung CT scan images
Lung abnormalities are highly risky conditions in humans. The early diagnosis of lung abnormalities is essential to reduce the risk by enabling quick and efficient treatment. This research work aims to propose a Deep-Learning (DL) framework to examine lung pneumonia and cancer. This work proposes two different DL techniques to assess the considered problem: (i) The initial DL method, named a modified AlexNet (MAN), is proposed to classify chest X-Ray images into normal and pneumonia class. In the MAN, the classification is implemented using with Support Vector Machine (SVM), and its performance is compared against Softmax. Further, its performance is validated with other pre-trained DL techniques, such as AlexNet, VGG16, VGG19 and ResNet50. (ii) The second DL work implements a fusion of handcrafted and learned features in the MAN to improve classification accuracy during lung cancer assessment. This work employs serial fusion and Principal Component Analysis (PCA) based features selection to enhance the feature vector. The performance of this DL frame work is tested using benchmark lung cancer CT images of LIDC-IDRI and classification accuracy (97.27%) is attained. (c) 2019 Elsevier B.V
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