Proceedings, MSVSCC 2012

Proceedings of the 6th Annual Modeling, Simulation & Visualization Student Capstone Conference held on April 19, 2012 at VMASC in Suffolk, Virginia

A formal architecture-centric and model driven approach for the engineering of science gateways

From n-Tier client/server applications, to more complex academic Grids, or even the most recent and promising industrial Clouds, the last decade has witnessed significant developments in distributed computing. In spite of this conceptual heterogeneity, Service-Oriented Architecture (SOA) seems to have emerged as the common and underlying abstraction paradigm, even though different standards and technologies are applied across application domains. Suitable access to data and algorithms resident in SOAs via so-called ‘Science Gateways’ has thus become a pressing need in order to realize the benefits of distributed computing infrastructures.In an attempt to inform service-oriented systems design and developments in Grid-based biomedical research infrastructures, the applicant has consolidated work from three complementary experiences in European projects, which have developed and deployed large-scale production quality infrastructures and more recently Science Gateways to support research in breast cancer, pediatric diseases and neurodegenerative pathologies respectively. In analyzing the requirements from these biomedical applications the applicant was able to elaborate on commonly faced issues in Grid development and deployment, while proposing an adapted and extensible engineering framework. Grids implement a number of protocols, applications, standards and attempt to virtualize and harmonize accesses to them. Most Grid implementations therefore are instantiated as superposed software layers, often resulting in a low quality of services and quality of applications, thus making design and development increasingly complex, and rendering classical software engineering approaches unsuitable for Grid developments.The applicant proposes the application of a formal Model-Driven Engineering (MDE) approach to service-oriented developments, making it possible to define Grid-based architectures and Science Gateways that satisfy quality of service requirements, execution platform and distribution criteria at design time. An novel investigation is thus presented on the applicability of the resulting grid MDE (gMDE) to specific examples and conclusions are drawn on the benefits of this approach and its possible application to other areas, in particular that of Distributed Computing Infrastructures (DCI) interoperability, Science Gateways and Cloud architectures developments

Development of a Framework for CPS Open Standards and Platforms

This technical report describes a Framework we have developed through our research and investigations in this project, with the goal to facilitate creation of Open Standards and Platforms for CPS; a task that addresses a critical mission for NIST. The rapid development of information technology (in terms of processing power, embedded hardware and software systems, comprehensive IT management systems, networking and Internet growth, system design environments) is producing an increasing number of applications and opening new doors. In addition over the last decade we entered a new era where systems complexity has increased dramatically. Complexity is increased both by the number of components that are included in each system as well as by the dependencies between those components. Increasingly, systems tend to be more software dependent and that is a major challenge that engineers involved in the development of such systems face. The challenge is even greater when a safety critical system is considered, like an airplane or a passenger car. Software-intensive systems and devices have become everyday consumables. There is a need for development of software that is provably error-free. Thanks to their multifaceted support for networking and inclusion of data and services from global networks, systems are evolving to form integrated, overarching solutions that are increasingly penetrating all areas of life and work. When software dependent systems interact with the physical environment then we have the class of cyber-physical systems (CPS) [1, 2]. The challenge in CPS is to incorporate the inputs (and their characteristics and constraints) from the physical components in the logic of the cyber components (hardware and software). CPS are engineered systems constructed as networked interactions of physical and computational (cyber) components. In CPS, computations and communication are deeply embedded in and interacting with physical processes, and add new capabilities to physical systems. Competitive pressure and societal needs drive industry to design and deploy airplanes and cars that are more energy efficient and safe, medical devices and systems that are more dependable, defense systems that are more autonomous and secure. Whole industrial sectors are transformed by new product lines that are CPS-based. Modern CPSs are not simply the connection of two different kinds of components engineered by means of distinct design technology, but rather, a new system category that is both physical and computational [1, 2]. Current industrial experience tells us that, in fact, we have reached the limits of our knowledge of how to combine computers and physical systems. The shortcomings range from technical limitations in the foundations of cyber-physical systems to the way we organize our industries and educate engineers and scientists that support cyber-physical system design. If we continue to build systems using our very limited methods and tools but lack the science and technology foundations, we will create significant risks, produce failures and lead to loss of market. Nowadays, with increasing frequency we observe systems that cooperate to achieve a common goal, even though there were not built for that reason. These are called systems of systems. For example, the Global Positioning System (GPS) is a system by itself. However, it needs to cooperate with other systems when the air traffic control system of systems is under 3 consideration. The analysis and development of such systems should be done carefully because of the emergent behavior that systems exhibit when they are coupled with other systems. However, apart from the increasing complexity and the other technical challenges, there is a need to decrease time-to-market for new systems as well as the associated costs. This specific trend and associated requirements, which are an outcome of global competitiveness, are expected to continue and become even more stringent. If a successful contribution is to be made in shaping this change, the revolutionary potential of CPS must be recognized and incorporated into internal development processes at an early stage. For that Interoperability and Integratability of CPS is critical. In this Task we have developed a Framework to facilitate interoperability and integratability of CPS via Open Standards and Platforms. The purpose of this technical report is to introduce this Framework and its critical components, to provide various instantiations of it, and to describe initial successful applications of it in various important classes of CPS. An additional goal of publishing this technical report is to solicit feedback on the proposed Framework, and to catalyze discussions and interactions in the broader CPS technical community towards improving and strengthening this Framework. CPS integrate data and services from different systems which were developed independently and with disparate objectives, thereby enabling new functionalities and benefits. Currently there is a lack of well-defined interfaces that on the one hand define the standards for the form and content of the data being exchanged, but on the other hand take account of non-functional aspects of this data, such as differing levels of data quality or reliability. A similar situation exists with respect to tools and synthesis environments, although some work has been initiated in the latter. The technological prerequisite for the design of the aforementioned various functions and value added services of CPS is the interoperability and integratability of these systems as well as their capability to be adapted flexibly and application-specifically as well as extended at the different levels of abstraction. Dependent on the objective and scope of the application, it may be necessary to integrate component functions (Embedded Systems (ES), System of Systems (SoS), CPS), to establish communication and interfaces, and to ensure the required level of quality of interaction and also of the overall system behavior. This requires cross-domain concepts for architecture, communication and compatibility at all levels. The effects of these factors on existing or yet undeveloped systems and architectures represent a major challenge. Investigation into these factors is the objective of current national and international studies and research projects. CPS create core technological challenges for traditional system architectures, especially because of their high degree of connectivity. This is because CPS are not constructed for one specific purpose or function, but rather are open for many different services and processes, and must therefore be adaptable. In view of their evolutionary nature, they are only controllable to a limited extent. This creates new demands for greater interoperability and communication within CPS that cannot be met by current closed systems. In particular, the differences in the characteristics of embedded systems in relation to IT systems and services and data in networks lead to outstanding questions in relation to the form of architectures, the definition of system and communication interfaces and requirements for underlying CPS platforms with basic services and parallel architectures at different levels of abstraction. 4 The technological developments underlying CPS evolution require the development of standards in the individual application domains, as well as basic infrastructure investments that cannot be borne by individual companies alone. This is particularly significant for SMEs. The development and operation of uniform platforms to migrate individual services and products will therefore be as much of a challenge as joint specification standards. The creation of such quasi standards, less in the traditional mold of classic industry norms and standards and more in the sense of de facto standards that become established on the basis of technological and market dominance, will become an essential part of technological and market leadership. To summarize and emphasize, the complexity of the subject in terms of the required technologies and capabilities of CPS, as well as the capabilities and competences required to develop, control and design/ create innovative, usable CPS applications, demand fundamentally integrated action, interdisciplinarity (research and development, economy and society) and vertical and horizontal efforts in: The creation of open, cross-domain platforms with fundamental services (communication, networking, interoperability) and architectures (including domainspecific architectures); The complementary expansion and integration of application fields and environments with vertical experimentation platforms and correspondingly integrated interdisciplinary efforts; The systematic enhancement with respect to methods and technologies across all involved disciplines to create innovative CPS. The aim of our research and investigations under this Task of the project, was precisely to clarify these objectives and systematically develop detailed recommendations for action. Our research and investigations have identified the following essential and fundamental challenges for the modeling, design, synthesis and manufacturing of CPS: (i) The creation and demonstration of a framework for developing cross-domain integrated modeling hubs for CPS. (ii) The creation and demonstration of a framework for linking the integrated CPS modeling hub of (i) with powerful and diverse tradeoff analysis methods and tools for design exploration for CPS. (iii) The creation of a framework of linking the integrated CPS synthesis environment of (i) and (ii) with databases of modular component and process (manufacturing) models, backwards compatible with earlier legacy systems; (iv)The creation of a framework for translating textual requirements to mathematical representations as constraints, rules and metrics involving both logical and numerical variables and the automatic (at least to 75%) allocation of the resulting specifications to components of the CPS and of processes, in a way that allows traceability. 5 These challenges have been listed here in the order of increasing difficulty both conceptually and in terms of arriving at implementable solutions. The order also reflects the extent to which the current state of affairs has made progress towards developing at least some initial instantiations of the desired frameworks. In this context, it is useful to compare with the advanced state of development of similar frameworks and their instantiations for synthesis and manufacturing of complex microelectronic VLSI chips including distributed ones, which have been available as integrated tools by several vendors for at least a decade. Regarding challenge (i) we have performed extensive work and research in this project towards developing model-based systems engineering (MBSE) procedures for the design, integration, testing and operational management of cyber-physical systems, that is, physical systems with cyber potentially embedded in every physical component. Thus in the Framework, described in this report, for standards for integrated modeling hubs for CPS, MBSE methods and tools are prominent. Regarding the search for a framework for standards for CPS this selection has the additional advantage that it is also emerging as an accepted framework for systems engineering by all industry sectors with substantial interest in CPS [3, 7]. Regarding challenge (ii) we have performed extensive work and research in this project towards developing the foundations for such an integration, and we have developed and demonstrated the first ever integration of a powerful tradeoff analysis tool (and methodology) with our SysMLIntegrated system modeling environments for CPS synthesis [3, 7]. Primary applications of interest that we have instantiated this framework are: microgrids and power grids, wireless sensor networks (WSN) and applications to Smart Grid, energy efficient buildings, microrobotics and collaborative robotics, and the overarching (for all these applications) security and trust issues including our pioneering and innovative work on compositional security systems. A key concept here is the integration of multi-criteria, multi constraint optimization with constrained based reasoning. Regarding challenge (iii) we have only developed the conceptual Framework, as any required instantiations will require substantial commercial grade software development beyond the scope of this project. It is clear however that object-relational databases and database mediators (for both data and semantics) will have to be employed. Regarding challenge (iv) we have developed a Framework for checking and validating specifications, after they have been translated to their mathematical representations as constraints and metrics with logical and numerical variables. Various multi-criteria optimization, constrained based reasoning, model checking and automatic theorem proving tools will have to be combined. The automatic annotation of the system blocks with requirements and parameter specifications remains an open challenge.Research supported in part by Cooperative Agreement, NIST 70NANB11H148, to the University of Maryland College Park

A framework for analyzing changes in health care lexicons and nomenclatures

Ontologies play a crucial role in current web-based biomedical applications for capturing contextual knowledge in the domain of life sciences. Many of the so-called bio-ontologies and controlled vocabularies are known to be seriously defective from both terminological and ontological perspectives, and do not sufficiently comply with the standards to be considered formai ontologies. Therefore, they are continuously evolving in order to fix the problems and provide valid knowledge. Moreover, many problems in ontology evolution often originate from incomplete knowledge about the given domain. As our knowledge improves, the related definitions in the ontologies will be altered. This problem is inadequately addressed by available tools and algorithms, mostly due to the lack of suitable knowledge representation formalisms to deal with temporal abstract notations, and the overreliance on human factors. Also most of the current approaches have been focused on changes within the internal structure of ontologies, and interactions with other existing ontologies have been widely neglected. In this research, alter revealing and classifying some of the common alterations in a number of popular biomedical ontologies, we present a novel agent-based framework, RLR (Represent, Legitimate, and Reproduce), to semi-automatically manage the evolution of bio-ontologies, with emphasis on the FungalWeb Ontology, with minimal human intervention. RLR assists and guides ontology engineers through the change management process in general, and aids in tracking and representing the changes, particularly through the use of category theory. Category theory has been used as a mathematical vehicle for modeling changes in ontologies and representing agents' interactions, independent of any specific choice of ontology language or particular implementation. We have also employed rule-based hierarchical graph transformation techniques to propose a more specific semantics for analyzing ontological changes and transformations between different versions of an ontology, as well as tracking the effects of a change in different levels of abstractions. Thus, the RLR framework enables one to manage changes in ontologies, not as standalone artifacts in isolation, but in contact with other ontologies in an openly distributed semantic web environment. The emphasis upon the generality and abstractness makes RLR more feasible in the multi-disciplinary domain of biomedical Ontology change management

Decentralized Control and Adaptation in Distributed Applications via Web and Semantic Web Technologies

The presented work provides an approach and an implementation for enabling decentralized control in distributed applications composed of heterogeneous components by benefiting from the interoperability provided by the Web stack and relying on semantic technologies for enabling data integration. In particular, the concept of Smart Components enables adaptability at runtime through an adaptation layer and is complemented by a reference architecture as well as a prototypical implementation

Chatbots for Modelling, Modelling of Chatbots

Tesis Doctoral inédita leída en la Universidad Autónoma de Madrid, Escuela Politécnica Superior, Departamento de Ingeniería Informática. Fecha de Lectura: 28-03-202