1,012 research outputs found

    In Situ Visualization of Performance Data in Parallel CFD Applications

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    This thesis summarizes the work of the author on visualization of performance data in parallel Computational Fluid Dynamics (CFD) simulations. Current performance analysis tools are unable to show their data on top of complex simulation geometries (e.g. an aircraft engine). But in CFD simulations, performance is expected to be affected by the computations being carried out, which in turn are tightly related to the underlying computational grid. Therefore it is imperative that performance data is visualized on top of the same computational geometry which they originate from. However, performance tools have no native knowledge of the underlying mesh of the simulation. This scientific gap can be filled by merging the branches of HPC performance analysis and in situ visualization of CFD simulations data, which shall be done by integrating existing, well established state-of-the-art tools from each field. In this threshold, an extension for the open-source performance tool Score-P was designed and developed, which intercepts an arbitrary number of manually selected code regions (mostly functions) and send their respective measurements – amount of executions and cumulative time spent – to the visualization software ParaView – through its in situ library, Catalyst –, as if they were any other flow-related variable. Subsequently the tool was extended with the capacity to also show communication data (messages sent between MPI ranks) on top of the CFD mesh. Testing and evaluation are done with two industry-grade codes: Rolls-Royce’s CFD code, Hydra, and Onera, DLR and Airbus’ CFD code, CODA. On the other hand, it has been also noticed that the current performance tools have limited capacity of displaying their data on top of three-dimensional, framed (i.e. time-stepped) representations of the cluster’s topology. Parallel to that, in order for the approach not to be limited to codes which already have the in situ adapter, it was extended to take the performance data and display it – also in codes without in situ – on a three-dimensional, framed representation of the hardware resources being used by the simulation. Testing is done with the Multi-Grid and Block Tri-diagonal NAS Parallel Benchmarks (NPB), as well as with Hydra and CODA again. The benchmarks are used to explain how the new visualizations work, while real performance analyses are done with the industry-grade CFD codes. The proposed solution is able to provide concrete performance insights, which would not have been reached with the current performance tools and which motivated beneficial changes in the respective source code in real life. Finally, its overhead is discussed and proven to be suitable for usage with CFD codes. The dissertation provides a valuable addition to the state of the art of highly parallel CFD performance analysis and serves as basis for further suggested research directions

    ATMOL: A Domain-Specific Language for Atmospheric Modeling

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    This paper describes the design and implementation of ATMOL: a domain-specific language for the formulation and implementation of atmospheric models. ATMOL was developed in close collaboration with meteorologists at the Royal Netherlands Meteorological Institute (KNMI) to ensure ease of use, concise notation, and the adoptation of common notational conventions. ATMOL’s expressiveness allows the formulation of high-level and low-level model details as language constructs for problem refinement and code synthesis. The atmospheric models specified in ATMOL are translated into efficient numerical codes with CTADEL, a tool for symbolic manipulation and code synthesis

    ATMOL: A Domain-Specific Language for Atmospheric Modeling

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    This paper describes the design and implementation of ATMOL: a domain-specific language for the formulation and implementation of atmospheric models. ATMOL was developed in close collaboration with meteorologists at the Royal Netherlands Meteorological Institute (KNMI) to ensure ease of use, concise notation, and the adoptation of common notational conventions. ATMOL’s expressiveness allows the formulation of high-level and low-level model details as language constructs for problem refinement and code synthesis. The atmospheric models specified in ATMOL are translated into efficient numerical codes with CTADEL, a tool for symbolic manipulation and code synthesis

    A Framework for Modeling Human Behavior in Large-scale Agent-based Epidemic Simulations

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    Acknowledgements We thank Cuebiq; mobility data is provided by Cuebiq, a location intelligence and measurement platform. Through its Data for Good program, Cuebiq provides access to aggregated mobility data for academic research and humanitarian initiatives. This first-party data is collected from anonymized users who have opted-in to provide access to their location data anonymously, through a GDPR and CCPA compliant framework. To further preserve privacy, portions of the data are aggregated to the census-block group level. For the purpose of open access, the authors have applied a Creative Commons Attribution (CC BY) licence to any Author Accepted Manuscript version arising from this submission.Peer reviewedPublisher PD

    Proceedings of the Second International Workshop on Sustainable Ultrascale Computing Systems (NESUS 2015) Krakow, Poland

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    Proceedings of: Second International Workshop on Sustainable Ultrascale Computing Systems (NESUS 2015). Krakow (Poland), September 10-11, 2015
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