Improving Fine-Grained Irregular Shared-Memory Benchmarks by Data Reordering

We demonstrate that data reordering can substantially improve the performance of fine-grained irregular sharedmemory benchmarks, on both hardware and software shared-memory systems. In particular, we evaluate two distinct data reordering techniques that seek to co-locate in memory objects that are in close proximity in the physical system modeled by the computation. The effects of these techniques are increased spatial locality and reduced false sharing. We evaluate the effectiveness of the data reordering techniques on a set of five irregular applications from SPLASH-2 and Chaos. We implement both techniques in a small library, allowing us to enable them in an application by adding less than 10 lines of code. Our results on one hardware and two software shared-memory systems show that, with data reordering during initialization, the performance of these applications is improved by 12%–99% on the Origin 2000, 30%–366% on TreadMarks, and 14%–269% on HLRC

Lace: non-blocking split deque for work-stealing

Work-stealing is an efficient method to implement load balancing in fine-grained task parallelism. Typically, concurrent deques are used for this purpose. A disadvantage of many concurrent deques is that they require expensive memory fences for local deque operations.\ud \ud In this paper, we propose a new non-blocking work-stealing deque based on the split task queue. Our design uses a dynamic split point between the shared and the private portions of the deque, and only requires memory fences when shrinking the shared portion.\ud \ud We present Lace, an implementation of work-stealing based on this deque, with an interface similar to the work-stealing library Wool, and an evaluation of Lace based on several common benchmarks. We also implement a recent approach using private deques in Lace. We show that the split deque and the private deque in Lace have similar low overhead and high scalability as Wool

Matching non-uniformity for program optimizations on heterogeneous many-core systems

As computing enters an era of heterogeneity and massive parallelism, it exhibits a distinct feature: the deepening non-uniform relations among the computing elements in both hardware and software. Besides traditional non-uniform memory accesses, much deeper non-uniformity shows in a processor, runtime, and application, exemplified by the asymmetric cache sharing, memory coalescing, and thread divergences on multicore and many-core processors. Being oblivious to the non-uniformity, current applications fail to tap into the full potential of modern computing devices.;My research presents a systematic exploration into the emerging property. It examines the existence of such a property in modern computing, its influence on computing efficiency, and the challenges for establishing a non-uniformity--aware paradigm. I propose several techniques to translate the property into efficiency, including data reorganization to eliminate non-coalesced accesses, asynchronous data transformations for locality enhancement and a controllable scheduling for exploiting non-uniformity among thread blocks. The experiments show much promise of these techniques in maximizing computing throughput, especially for programs with complex data access patterns

Irregular accesses reorder unit: improving GPGPU memory coalescing for graph-based workloads

GPGPU architectures have become the dominant platform for massively parallel workloads, delivering high performance and energy efficiency for popular applications such as machine learning, computer vision or self-driving cars. However, irregular applications, such as graph processing, fail to fully exploit GPGPU resources due to their divergent memory accesses that saturate the memory hierarchy. To reduce the pressure on the memory subsystem for divergent memory-intensive applications, programmers must take into account SIMT execution model and memory coalescing in GPGPUs, devoting significant efforts in complex optimization techniques. Despite these efforts, we show that irregular graph processing still suffers from low GPGPU performance. We observe that in many irregular applications the mapping of data to threads can be safely changed. In other words, it is possible to relax the strict relationship between thread and data processed to reduce memory divergence. Based on this observation, we propose the Irregular accesses Reorder Unit (IRU), a novel hardware extension tightly integrated in the GPGPU pipeline. The IRU reorders data processed by the threads on irregular accesses to improve memory coalescing, i.e., it tries to assign data elements to threads as to produce coalesced accesses in SIMT groups. Furthermore, the IRU is capable of filtering and merging duplicated accesses, significantly reducing the workload. Programmers can easily utilize the IRU with a simple API, or let the compiler issue instructions from our extended ISA. We evaluate our proposal for state-of-the-art graph-based algorithms and a wide selection of applications. Results show that the IRU achieves a memory coalescing improvement of 1.32x and a 46% reduction in the overall traffic in the memory hierarchy, which results in 1.33x speedup and 13% energy savings on average, while incurring in a small 5.6% area overhead.This work has been supported by the CoCoUnit ERC Advanced Grant of the EU’s Horizon 2020 program (grant No 833057), the Spanish State Research Agency (MCIN/AEI) under grant PID2020-113172RB-I00 and the ICREA Academia program.Peer ReviewedPostprint (published version

Locality Enhancement and Dynamic Optimizations on Multi-Core and GPU

Enhancing the match between software executions and hardware features is key to computing efficiency. The match is a continuously evolving and challenging problem. This dissertation focuses on the development of programming system support for exploiting two key features of modern hardware development: the massive parallelism of emerging computational accelerators such as Graphic Processing Units (GPU), and the non-uniformity of cache sharing in modern multicore processors. They are respectively driven by the important role of accelerators in today\u27s general-purpose computing and the ultimate importance of memory performance. This dissertation particularly concentrates on optimizing control flows and memory references, at both compilation and execution time, to tap into the full potential of pure software solutions in taking advantage of the two key hardware features.;Conditional branches cause divergences in program control flows, which may result in serious performance degradation on massively data-parallel GPU architectures with Single Instruction Multiple Data (SIMD) parallelism. On such an architecture, control divergence may force computing units to stay idle for a substantial time, throttling system throughput by orders of magnitude. This dissertation provides an extensive exploration of the solution to this problem and presents program level transformations based upon two fundamental techniques --- thread relocation and data relocation. These two optimizations provide fundamental support for swapping jobs among threads so that the control flow paths of threads converge within every SIMD thread group.;In memory performance, this dissertation concentrates on two aspects: the influence of nonuniform sharing on multithreading applications, and the optimization of irregular memory references on GPUs. In shared cache multicore chips, interactions among threads are complicated due to the interplay of cache contention and synergistic prefetching. This dissertation presents the first systematic study on the influence of non-uniform shared cache on contemporary parallel programs, reveals the mismatch between the software development and underlying cache sharing hierarchies, and further demonstrates it by proposing and applying cache-sharing-aware data transformations that bring significant performance improvement. For the second aspect, the efficiency of GPU accelerators is sensitive to irregular memory references, which refer to the memory references whose access patterns remain unknown until execution time (e.g., A[P[i]]). The root causes of the irregular memory reference problem are similar to that of the control flow problem, while in a more general and complex form. I developed a framework, named G-Streamline, as a unified software solution to dynamic irregularities in GPU computing. It treats both types of irregularities at the same time in a holistic fashion, maximizing the whole-program performance by resolving conflicts among optimizations

GraphMineSuite: Enabling High-Performance and Programmable Graph Mining Algorithms with Set Algebra

We propose GraphMineSuite (GMS): the first benchmarking suite for graph mining that facilitates evaluating and constructing high-performance graph mining algorithms. First, GMS comes with a benchmark specification based on extensive literature review, prescribing representative problems, algorithms, and datasets. Second, GMS offers a carefully designed software platform for seamless testing of different fine-grained elements of graph mining algorithms, such as graph representations or algorithm subroutines. The platform includes parallel implementations of more than 40 considered baselines, and it facilitates developing complex and fast mining algorithms. High modularity is possible by harnessing set algebra operations such as set intersection and difference, which enables breaking complex graph mining algorithms into simple building blocks that can be separately experimented with. GMS is supported with a broad concurrency analysis for portability in performance insights, and a novel performance metric to assess the throughput of graph mining algorithms, enabling more insightful evaluation. As use cases, we harness GMS to rapidly redesign and accelerate state-of-the-art baselines of core graph mining problems: degeneracy reordering (by up to >2x), maximal clique listing (by up to >9x), k-clique listing (by 1.1x), and subgraph isomorphism (by up to 2.5x), also obtaining better theoretical performance bounds

Doctor of Philosophy

dissertationMemory access irregularities are a major bottleneck for bandwidth limited problems on Graphics Processing Unit (GPU) architectures. GPU memory systems are designed to allow consecutive memory accesses to be coalesced into a single memory access. Noncontiguous accesses within a parallel group of threads working in lock step may cause serialized memory transfers. Irregular algorithms may have data-dependent control flow and memory access, which requires runtime information to be evaluated. Compile time methods for evaluating parallelism, such as static dependence graphs, are not capable of evaluating irregular algorithms. The goals of this dissertation are to study irregularities within the context of unstructured mesh and sparse matrix problems, analyze the impact of vectorization widths on irregularities, and present data-centric methods that improve control flow and memory access irregularity within those contexts. Reordering associative operations has often been exploited for performance gains in parallel algorithms. This dissertation presents a method for associative reordering of stencil computations over unstructured meshes that increases data reuse through caching. This novel parallelization scheme offers considerable speedups over standard methods. Vectorization widths can have significant impact on performance in vectorized computations. Although the hardware vector width is generally fixed, the logical vector width used within a computation can range from one up to the width of the computation. Significant performance differences can occur due to thread scheduling and resource limitations. This dissertation analyzes the impact of vectorization widths on dense numerical computations such as 3D dG postprocessing. It is difficult to efficiently perform dynamic updates on traditional sparse matrix formats. Explicitly controlling memory segmentation allows for in-place dynamic updates in sparse matrices. Dynamically updating the matrix without rebuilding or sorting greatly improves processing time and overall throughput. This dissertation presents a new sparse matrix format, dynamic compressed sparse row (DCSR), which allows for dynamic streaming updates to a sparse matrix. A new method for parallel sparse matrix-matrix multiplication (SpMM) that uses dynamic updates is also presented

An efficient multi-core implementation of a novel HSS-structured multifrontal solver using randomized sampling

We present a sparse linear system solver that is based on a multifrontal variant of Gaussian elimination, and exploits low-rank approximation of the resulting dense frontal matrices. We use hierarchically semiseparable (HSS) matrices, which have low-rank off-diagonal blocks, to approximate the frontal matrices. For HSS matrix construction, a randomized sampling algorithm is used together with interpolative decompositions. The combination of the randomized compression with a fast ULV HSS factorization leads to a solver with lower computational complexity than the standard multifrontal method for many applications, resulting in speedups up to 7 fold for problems in our test suite. The implementation targets many-core systems by using task parallelism with dynamic runtime scheduling. Numerical experiments show performance improvements over state-of-the-art sparse direct solvers. The implementation achieves high performance and good scalability on a range of modern shared memory parallel systems, including the Intel Xeon Phi (MIC). The code is part of a software package called STRUMPACK -- STRUctured Matrices PACKage, which also has a distributed memory component for dense rank-structured matrices