478 research outputs found

    Kernel Methods for Machine Learning with Life Science Applications

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    Single-trial extraction of event-related potentials (ERPs) and classification of visual stimuli by ensemble use of discrete wavelet transform with Huffman coding and machine learning techniques

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    BackgroundPresentation of visual stimuli can induce changes in EEG signals that are typically detectable by averaging together data from multiple trials for individual participant analysis as well as for groups or conditions analysis of multiple participants. This study proposes a new method based on the discrete wavelet transform with Huffman coding and machine learning for single-trial analysis of evenal (ERPs) and classification of different visual events in the visual object detection task.MethodsEEG single trials are decomposed with discrete wavelet transform (DWT) up to the level of decomposition using a biorthogonal B-spline wavelet. The coefficients of DWT in each trial are thresholded to discard sparse wavelet coefficients, while the quality of the signal is well maintained. The remaining optimum coefficients in each trial are encoded into bitstreams using Huffman coding, and the codewords are represented as a feature of the ERP signal. The performance of this method is tested with real visual ERPs of sixty-eight subjects.ResultsThe proposed method significantly discards the spontaneous EEG activity, extracts the single-trial visual ERPs, represents the ERP waveform into a compact bitstream as a feature, and achieves promising results in classifying the visual objects with classification performance metrics: accuracies 93.60, sensitivities 93.55, specificities 94.85, precisions 92.50, and area under the curve (AUC) 0.93 using SVM and k-NN machine learning classifiers.ConclusionThe proposed method suggests that the joint use of discrete wavelet transform (DWT) with Huffman coding has the potential to efficiently extract ERPs from background EEG for studying evoked responses in single-trial ERPs and classifying visual stimuli. The proposed approach has O(N) time complexity and could be implemented in real-time systems, such as the brain-computer interface (BCI), where fast detection of mental events is desired to smoothly operate a machine with minds

    Partial discharge feature extraction based on ensemble empirical mode decomposition and sample entropy

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    Partial Discharge (PD) pattern recognition plays an important part in electrical equipment fault diagnosis and maintenance. Feature extraction could greatly affect recognition results. Traditional PD feature extraction methods suffer from high-dimension calculation and signal attenuation. In this study, a novel feature extraction method based on Ensemble Empirical Mode Decomposition (EEMD) and Sample Entropy (SamEn) is proposed. In order to reduce the influence of noise, a wavelet method is applied to PD de-noising. Noise Rejection Ratio (NRR) and Mean Square Error (MSE) are adopted as the de-noising indexes. With EEMD, the de-noised signal is decomposed into a finite number of Intrinsic Mode Functions (IMFs). The IMFs, which contain the dominant information of PD, are selected using a correlation coefficient method. From that, the SamEn of selected IMFs are extracted as PD features. Finally, a Relevance Vector Machine (RVM) is utilized for pattern recognition using the features extracted. Experimental results demonstrate that the proposed method combines excellent properties of both EEMD and SamEn. The recognition results are encouraging with satisfactory accuracy

    ClusterGAN : Latent Space Clustering in Generative Adversarial Networks

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    Generative Adversarial networks (GANs) have obtained remarkable success in many unsupervised learning tasks and unarguably, clustering is an important unsupervised learning problem. While one can potentially exploit the latent-space back-projection in GANs to cluster, we demonstrate that the cluster structure is not retained in the GAN latent space. In this paper, we propose ClusterGAN as a new mechanism for clustering using GANs. By sampling latent variables from a mixture of one-hot encoded variables and continuous latent variables, coupled with an inverse network (which projects the data to the latent space) trained jointly with a clustering specific loss, we are able to achieve clustering in the latent space. Our results show a remarkable phenomenon that GANs can preserve latent space interpolation across categories, even though the discriminator is never exposed to such vectors. We compare our results with various clustering baselines and demonstrate superior performance on both synthetic and real datasets.Comment: GANs, Clustering, Latent Space, Interpolation (v2 : Typos fixed, some new experiments added, reported metrics on best validated model.

    Medical imaging analysis with artificial neural networks

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    Given that neural networks have been widely reported in the research community of medical imaging, we provide a focused literature survey on recent neural network developments in computer-aided diagnosis, medical image segmentation and edge detection towards visual content analysis, and medical image registration for its pre-processing and post-processing, with the aims of increasing awareness of how neural networks can be applied to these areas and to provide a foundation for further research and practical development. Representative techniques and algorithms are explained in detail to provide inspiring examples illustrating: (i) how a known neural network with fixed structure and training procedure could be applied to resolve a medical imaging problem; (ii) how medical images could be analysed, processed, and characterised by neural networks; and (iii) how neural networks could be expanded further to resolve problems relevant to medical imaging. In the concluding section, a highlight of comparisons among many neural network applications is included to provide a global view on computational intelligence with neural networks in medical imaging
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