Parallel optimization algorithms for high performance computing : application to thermal systems

The need of optimization is present in every field of engineering. Moreover, applications requiring a multidisciplinary approach in order to make a step forward are increasing. This leads to the need of solving complex optimization problems that exceed the capacity of human brain or intuition. A standard way of proceeding is to use evolutionary algorithms, among which genetic algorithms hold a prominent place. These are characterized by their robustness and versatility, as well as their high computational cost and low convergence speed. Many optimization packages are available under free software licenses and are representative of the current state of the art in optimization technology. However, the ability of optimization algorithms to adapt to massively parallel computers reaching satisfactory efficiency levels is still an open issue. Even packages suited for multilevel parallelism encounter difficulties when dealing with objective functions involving long and variable simulation times. This variability is common in Computational Fluid Dynamics and Heat Transfer (CFD & HT), nonlinear mechanics, etc. and is nowadays a dominant concern for large scale applications. Current research in improving the performance of evolutionary algorithms is mainly focused on developing new search algorithms. Nevertheless, there is a vast knowledge of sequential well-performing algorithmic suitable for being implemented in parallel computers. The gap to be covered is efficient parallelization. Moreover, advances in the research of both new search algorithms and efficient parallelization are additive, so that the enhancement of current state of the art optimization software can be accelerated if both fronts are tackled simultaneously. The motivation of this Doctoral Thesis is to make a step forward towards the successful integration of Optimization and High Performance Computing capabilities, which has the potential to boost technological development by providing better designs, shortening product development times and minimizing the required resources. After conducting a thorough state of the art study of the mathematical optimization techniques available to date, a generic mathematical optimization tool has been developed putting a special focus on the application of the library to the field of Computational Fluid Dynamics and Heat Transfer (CFD & HT). Then the main shortcomings of the standard parallelization strategies available for genetic algorithms and similar population-based optimization methods have been analyzed. Computational load imbalance has been identified to be the key point causing the degradation of the optimization algorithm¿s scalability (i.e. parallel efficiency) in case the average makespan of the batch of individuals is greater than the average time required by the optimizer for performing inter-processor communications. It occurs because processors are often unable to finish the evaluation of their queue of individuals simultaneously and need to be synchronized before the next batch of individuals is created. Consequently, the computational load imbalance is translated into idle time in some processors. Several load balancing algorithms have been proposed and exhaustively tested, being extendable to any other population-based optimization method that needs to synchronize all processors after the evaluation of each batch of individuals. Finally, a real-world engineering application that consists on optimizing the refrigeration system of a power electronic device has been presented as an illustrative example in which the use of the proposed load balancing algorithms is able to reduce the simulation time required by the optimization tool.El aumento de las aplicaciones que requieren de una aproximación multidisciplinar para poder avanzar se constata en todos los campos de la ingeniería, lo cual conlleva la necesidad de resolver problemas de optimización complejos que exceden la capacidad del cerebro humano o de la intuición. En estos casos es habitual el uso de algoritmos evolutivos, principalmente de los algoritmos genéticos, caracterizados por su robustez y versatilidad, así como por su gran coste computacional y baja velocidad de convergencia. La multitud de paquetes de optimización disponibles con licencias de software libre representan el estado del arte actual en tecnología de optimización. Sin embargo, la capacidad de adaptación de los algoritmos de optimización a ordenadores masivamente paralelos alcanzando niveles de eficiencia satisfactorios es todavía una tarea pendiente. Incluso los paquetes adaptados al paralelismo multinivel tienen dificultades para gestionar funciones objetivo que requieren de tiempos de simulación largos y variables. Esta variabilidad es común en la Dinámica de Fluidos Computacional y la Transferencia de Calor (CFD & HT), mecánica no lineal, etc. y es una de las principales preocupaciones en aplicaciones a gran escala a día de hoy. La investigación actual que tiene por objetivo la mejora del rendimiento de los algoritmos evolutivos está enfocada principalmente al desarrollo de nuevos algoritmos de búsqueda. Sin embargo, ya se conoce una gran variedad de algoritmos secuenciales apropiados para su implementación en ordenadores paralelos. La tarea pendiente es conseguir una paralelización eficiente. Además, los avances en la investigación de nuevos algoritmos de búsqueda y la paralelización son aditivos, por lo que el proceso de mejora del software de optimización actual se verá incrementada si se atacan ambos frentes simultáneamente. La motivación de esta Tesis Doctoral es avanzar hacia una integración completa de las capacidades de Optimización y Computación de Alto Rendimiento para así impulsar el desarrollo tecnológico proporcionando mejores diseños, acortando los tiempos de desarrollo del producto y minimizando los recursos necesarios. Tras un exhaustivo estudio del estado del arte de las técnicas de optimización matemática disponibles a día de hoy, se ha diseñado una librería de optimización orientada al campo de la Dinámica de Fluidos Computacional y la Transferencia de Calor (CFD & HT). A continuación se han analizado las principales limitaciones de las estrategias de paralelización disponibles para algoritmos genéticos y otros métodos de optimización basados en poblaciones. En el caso en que el tiempo de evaluación medio de la tanda de individuos sea mayor que el tiempo medio que necesita el optimizador para llevar a cabo comunicaciones entre procesadores, se ha detectado que la causa principal de la degradación de la escalabilidad o eficiencia paralela del algoritmo de optimización es el desequilibrio de la carga computacional. El motivo es que a menudo los procesadores no terminan de evaluar su cola de individuos simultáneamente y deben sincronizarse antes de que se cree la siguiente tanda de individuos. Por consiguiente, el desequilibrio de la carga computacional se convierte en tiempo de inactividad en algunos procesadores. Se han propuesto y testado exhaustivamente varios algoritmos de equilibrado de carga aplicables a cualquier método de optimización basado en una población que necesite sincronizar los procesadores tras cada tanda de evaluaciones. Finalmente, se ha presentado como ejemplo ilustrativo un caso real de ingeniería que consiste en optimizar el sistema de refrigeración de un dispositivo de electrónica de potencia. En él queda demostrado que el uso de los algoritmos de equilibrado de carga computacional propuestos es capaz de reducir el tiempo de simulación que necesita la herramienta de optimización

Application of an Improved Genetic Algorithm for Optimal Design of Planar Steel Frames

Genetic Algorithm (GA) is one of the most widely used optimization algorithms. This algorithm consists of five stages, namely population generation, crossover, mutation, evaluation, and selection. This study presents a modified version of GA called Improved Genetic Algorithm (IGA) for the optimization of steel frame designs. In the IGA, the rate of convergence to the optimal solution is increased by splitting the population generation process to two stages. In the first stage, the initial population is generated by random selection of members from among AISC W-shapes. The generated population is then evaluated in another stage, where the member that does not satisfy the design constraints are replaced with stronger members with larger cross sectional area. This process continues until all design constraints are satisfied. Through this process, the initial population will be improved intelligently so that the design constraints fall within the allowed range. For performance evaluation and comparison, the method was used to design and optimize 10-story and 24-story frames based on the LRFD method as per AISC regulations with the finite element method used for frame analysis. Structural analysis, design, and optimization were performed using a program written with MATLAB programming language. The results show that using the proposed method (IGA) for frame optimization reduces the volume of computations and increases the rate of convergence, thus allowing access to frame designs with near-optimal weights in only a few iterations. Using the IGA also limits the search space to the area of acceptable solutions

ENERGY-AWARE OPTIMIZATION FOR EMBEDDED SYSTEMS WITH CHIP MULTIPROCESSOR AND PHASE-CHANGE MEMORY

Over the last two decades, functions of the embedded systems have evolved from simple real-time control and monitoring to more complicated services. Embedded systems equipped with powerful chips can provide the performance that computationally demanding information processing applications need. However, due to the power issue, the easy way to gain increasing performance by scaling up chip frequencies is no longer feasible. Recently, low-power architecture designs have been the main trend in embedded system designs. In this dissertation, we present our approaches to attack the energy-related issues in embedded system designs, such as thermal issues in the 3D chip multiprocessor (CMP), the endurance issue in the phase-change memory(PCM), the battery issue in the embedded system designs, the impact of inaccurate information in embedded system, and the cloud computing to move the workload to remote cloud computing facilities. We propose a real-time constrained task scheduling method to reduce peak temperature on a 3D CMP, including an online 3D CMP temperature prediction model and a set of algorithm for scheduling tasks to different cores in order to minimize the peak temperature on chip. To address the challenging issues in applying PCM in embedded systems, we propose a PCM main memory optimization mechanism through the utilization of the scratch pad memory (SPM). Furthermore, we propose an MLC/SLC configuration optimization algorithm to enhance the efficiency of the hybrid DRAM + PCM memory. We also propose an energy-aware task scheduling algorithm for parallel computing in mobile systems powered by batteries. When scheduling tasks in embedded systems, we make the scheduling decisions based on information, such as estimated execution time of tasks. Therefore, we design an evaluation method for impacts of inaccurate information on the resource allocation in embedded systems. Finally, in order to move workload from embedded systems to remote cloud computing facility, we present a resource optimization mechanism in heterogeneous federated multi-cloud systems. And we also propose two online dynamic algorithms for resource allocation and task scheduling. We consider the resource contention in the task scheduling

Proceedings of the First International Workshop on Sustainable Ultrascale Computing Systems (NESUS 2014): Porto, Portugal

Proceedings of: First International Workshop on Sustainable Ultrascale Computing Systems (NESUS 2014). Porto (Portugal), August 27-28, 2014

Portability and performance in heterogeneous many core Systems

Dissertação de mestrado em InformáticaCurrent computing systems have a multiplicity of computational resources with different architectures, such as multi-core CPUs and GPUs. These platforms are known as heterogeneous many-core systems (HMS) and as computational resources evolve they are o ering more parallelism, as well as becoming more heterogeneous. Exploring these devices requires the programmer to be aware of the multiplicity of associated architectures, computing models and development framework. Portability issues, disjoint memory address spaces, work distribution and irregular workload patterns are major examples that need to be tackled in order to e ciently explore the computational resources of an HMS. This dissertation goal is to design and evaluate a base architecture that enables the identi cation and preliminary evaluation of the potential bottlenecks and limitations of a runtime system that addresses HMS. It proposes a runtime system that eases the programmer burden of handling all the devices available in a heterogeneous system. The runtime provides a programming and execution model with a uni ed address space managed by a data management system. An API is proposed in order to enable the programmer to express applications and data in an intuitive way. Four di erent scheduling approaches are evaluated that combine di erent data partitioning mechanisms with di erent work assignment policies and a performance model is used to provide some performance insights to the scheduler. The runtime e ciency was evaluated with three di erent applications - matrix multiplication, image convolution and n-body Barnes-Hut simulation - running in multicore CPUs and GPUs. In terms of productivity the results look promising, however, combining scheduling and data partitioning revealed some ine ciencies that compromise load balancing and needs to be revised, as well as the data management system that plays a crucial role in such systems. Performance model driven decisions were also evaluated which revealed that the accuracy of a performance model is also a compromising component

Particle Swarm Optimization

Particle swarm optimization (PSO) is a population based stochastic optimization technique influenced by the social behavior of bird flocking or fish schooling.PSO shares many similarities with evolutionary computation techniques such as Genetic Algorithms (GA). The system is initialized with a population of random solutions and searches for optima by updating generations. However, unlike GA, PSO has no evolution operators such as crossover and mutation. In PSO, the potential solutions, called particles, fly through the problem space by following the current optimum particles. This book represents the contributions of the top researchers in this field and will serve as a valuable tool for professionals in this interdisciplinary field

Optimization and Mining Methods for Effective Real-Time Embedded Systems

L’Internet des objets (IoT) est le réseau d’objets interdépendants, comme les voitures autonomes, les appareils électroménagers, les téléphones intelligents et d’autres systèmes embarqués. Ces systèmes embarqués combinent le matériel, le logiciel et la connection réseau permettant le traitement de données à l’aide des puissants centres de données de l’informatique nuagique. Cependant, la croissance exponentielle des applications de l’IoT a remodelé notre croyance sur l’informatique nuagique, et des certitudes durables sur ses capacités ont dû être mises à jour. De nos jours, l’informatique nuagique centralisé et classique rencontre plusieurs défis, tels que la latence du trafic, le temps de réponse et la confidentialité des données. Alors, la tendance dans le traitement des données générées par les dispositifs embarqués interconnectés consiste à faire plus de calcul au niveau du dispositif au bord du réseau. Cette possibilité de faire du traitement local aide à réduire la latence pour les applications temps réel présentant des fortes contraintes temporelles. Aussi, ça permet d’améliorer le traitement des quantités massives de données générées par ces périphériques. Réussir cette transition nécessite la conception de systèmes embarqués de haute performance en explorant efficacement les alternatives de conception (i.e. Exploration efficace de l’espace des solutions), en optimisant la topologie de déploiement des applications temps réel sur des architectures multi-processeurs (i.e. la façon dont le logiciel utilise le matériel) , et des algorithme d’exploration permettant un fonctionnement plus intelligent de ces dispositifs. Des efforts de recherche récents ont conduit à diverses approches automatisées facilitant la conception et l’amélioration du fonctionnement des système embarqués. Cependant, ces techniques existantes présentent plusieurs défis majeurs. Ces défis sont fortement présents sur les systèmes embarqués temps réel. Quatre des principaux défis sont : (1) Le manque de techniques d’exploration de données en ligne permettant l’amélioration des performances des systèmes embarqués. (2) L’utilisation inefficace des ressources informatiques des systèmes multiprocesseurs lors du déploiement de logiciels là dessus ; (3) L’exploration pseudo-aléatoire de l’espace des solutions (4) La sélection de la configuration appropriée à partir de la listes des solutions optimales obtenue.----------ABSTRACT: The Internet of things (IoT) is the network of interrelated devices or objects, such as selfdriving cars, home appliances, smart-phones and other embedded computing systems. It combines hardware, software, and network connectivity enabling data processing using powerful cloud data centers. However, the exponential rise of IoT applications reshaped our belief on the cloud computing, and long-lasting certainties about its capabilities had to be updated. The classical centralized cloud computing is encountering several challenges, such as traffic latency, response time, and data privacy. Thus, the trend in the processing of the generated data of IoT inter-connected embedded devices has shifted towards doing more computation closer to the device in the edge of the network. This possibility to do on-device processing helps to reduce latency for critical real-time applications and better processing of the massive amounts of data being generated by the these devices. Succeeding this transition towards the edge computing requires the design of high-performance embedded systems by efficiently exploring design alternatives (i.e. efficient Design Space Exploration), optimizing the deployment topology of multi-processor based real-time embedded systems (i.e. the way the software utilizes the hardware), and light mining techniques enabling smarter functioning of these devices. Recent research efforts on embedded systems have led to various automated approaches facilitating the design and the improvement of their functioning. However, existing methods and techniques present several major challenges. These challenges are more relevant when it comes to real-time embedded systems. Four of the main challenges are : (1) The lack of online data mining techniques that can enhance embedded computing systems functioning on the fly ; (2) The inefficient usage of computing resources of multi-processor systems when deploying software on ; (3) The pseudo-random exploration of the design space ; (4) The selection of the suitable implementation after performing the otimization process

Partitioning workflow applications over federated clouds to meet non-functional requirements

PhD ThesisWith cloud computing, users can acquire computer resources when they need them on a pay-as-you-go business model. Because of this, many applications are now being deployed in the cloud, and there are many di erent cloud providers worldwide. Importantly, all these various infrastructure providers o er services with di erent levels of quality. For example, cloud data centres are governed by the privacy and security policies of the country where the centre is located, while many organisations have created their own internal \private cloud" to meet security needs. With all this varieties and uncertainties, application developers who decide to host their system in the cloud face the issue of which cloud to choose to get the best operational conditions in terms of price, reliability and security. And the decision becomes even more complicated if their application consists of a number of distributed components, each with slightly di erent requirements. Rather than trying to identify the single best cloud for an application, this thesis considers an alternative approach, that is, combining di erent clouds to meet users' non-functional requirements. Cloud federation o ers the ability to distribute a single application across two or more clouds, so that the application can bene t from the advantages of each one of them. The key challenge for this approach is how to nd the distribution (or deployment) of application components, which can yield the greatest bene ts. In this thesis, we tackle this problem and propose a set of algorithms, and a framework, to partition a work ow-based application over federated clouds in order to exploit the strengths of each cloud. The speci c goal is to split a distributed application structured as a work ow such that the security and reliability requirements of each component are met, whilst the overall cost of execution is minimised. To achieve this, we propose and evaluate a cloud broker for partitioning a work ow application over federated clouds. The broker integrates with the e-Science Central cloud platform to automatically deploy a work ow over public and private clouds. We developed a deployment planning algorithm to partition a large work ow appli- - i - cation across federated clouds so as to meet security requirements and minimise the monetary cost. A more generic framework is then proposed to model, quantify and guide the partitioning and deployment of work ows over federated clouds. This framework considers the situation where changes in cloud availability (including cloud failure) arise during work ow execution