PlinyCompute: A Platform for High-Performance, Distributed, Data-Intensive Tool Development

This paper describes PlinyCompute, a system for development of high-performance, data-intensive, distributed computing tools and libraries. In the large, PlinyCompute presents the programmer with a very high-level, declarative interface, relying on automatic, relational-database style optimization to figure out how to stage distributed computations. However, in the small, PlinyCompute presents the capable systems programmer with a persistent object data model and API (the "PC object model") and associated memory management system that has been designed from the ground-up for high performance, distributed, data-intensive computing. This contrasts with most other Big Data systems, which are constructed on top of the Java Virtual Machine (JVM), and hence must at least partially cede performance-critical concerns such as memory management (including layout and de/allocation) and virtual method/function dispatch to the JVM. This hybrid approach---declarative in the large, trusting the programmer's ability to utilize PC object model efficiently in the small---results in a system that is ideal for the development of reusable, data-intensive tools and libraries. Through extensive benchmarking, we show that implementing complex objects manipulation and non-trivial, library-style computations on top of PlinyCompute can result in a speedup of 2x to more than 50x or more compared to equivalent implementations on Spark.Comment: 48 pages, including references and Appendi

Performance Evaluation of Communication Software Systems for Distributed Computing

In recent years there has been an increasing interest in object-oriented distributed computing since it is better quipped to deal with complex systems while providing extensibility, maintainability, and reusability. At the same time, several new high-speed network technologies have emerged for local and wide area networks. However, the performance of networking software is not improving as fast as the networking hardware and the workstation microprocessors. This paper gives an overview and evaluates the performance of the Common Object Request Broker Architecture (CORBA) standard in a distributed computing environment at NASA Ames Research Center. The environment consists of two testbeds of SGI workstations connected by four networks: Ethernet, FDDI, HiPPI, and ATM. The performance results for three communication software systems are presented, analyzed and compared. These systems are: BSD socket programming interface, IONA's Orbix, an implementation of the CORBA specification, and the PVM message passing library. The results show that high-level communication interfaces, such as CORBA and PVM, can achieve reasonable performance under certain conditions

Dynamic re-optimization techniques for stream processing engines and object stores

Large scale data storage and processing systems are strongly motivated by the need to store and analyze massive datasets. The complexity of a large class of these systems is rooted in their distributed nature, extreme scale, need for real-time response, and streaming nature. The use of these systems on multi-tenant, cloud environments with potential resource interference necessitates fine-grained monitoring and control. In this dissertation, we present efficient, dynamic techniques for re-optimizing stream-processing systems and transactional object-storage systems.^ In the context of stream-processing systems, we present VAYU, a per-topology controller. VAYU uses novel methods and protocols for dynamic, network-aware tuple-routing in the dataflow. We show that the feedback-driven controller in VAYU helps achieve high pipeline throughput over long execution periods, as it dynamically detects and diagnoses any pipeline-bottlenecks. We present novel heuristics to optimize overlays for group communication operations in the streaming model.^ In the context of object-storage systems, we present M-Lock, a novel lock-localization service for distributed transaction protocols on scale-out object stores to increase transaction throughput. Lock localization refers to dynamic migration and partitioning of locks across nodes in the scale-out store to reduce cross-partition acquisition of locks. The service leverages the observed object-access patterns to achieve lock-clustering and deliver high performance. We also present TransMR, a framework that uses distributed, transactional object stores to orchestrate and execute asynchronous components in amorphous data-parallel applications on scale-out architectures

HEC: Collaborative Research: SAM^2 Toolkit: Scalable and Adaptive Metadata Management for High-End Computing

The increasing demand for Exa-byte-scale storage capacity by high end computing applications requires a higher level of scalability and dependability than that provided by current file and storage systems. The proposal deals with file systems research for metadata management of scalable cluster-based parallel and distributed file storage systems in the HEC environment. It aims to develop a scalable and adaptive metadata management (SAM2) toolkit to extend features of and fully leverage the peak performance promised by state-of-the-art cluster-based parallel and distributed file storage systems used by the high performance computing community. There is a large body of research on data movement and management scaling, however, the need to scale up the attributes of cluster-based file systems and I/O, that is, metadata, has been underestimated. An understanding of the characteristics of metadata traffic, and an application of proper load-balancing, caching, prefetching and grouping mechanisms to perform metadata management correspondingly, will lead to a high scalability. It is anticipated that by appropriately plugging the scalable and adaptive metadata management components into the state-of-the-art cluster-based parallel and distributed file storage systems one could potentially increase the performance of applications and file systems, and help translate the promise and potential of high peak performance of such systems to real application performance improvements. The project involves the following components: 1. Develop multi-variable forecasting models to analyze and predict file metadata access patterns. 2. Develop scalable and adaptive file name mapping schemes using the duplicative Bloom filter array technique to enforce load balance and increase scalability 3. Develop decentralized, locality-aware metadata grouping schemes to facilitate the bulk metadata operations such as prefetching. 4. Develop an adaptive cache coherence protocol using a distributed shared object model for client-side and server-side metadata caching. 5. Prototype the SAM2 components into the state-of-the-art parallel virtual file system PVFS2 and a distributed storage data caching system, set up an experimental framework for a DOE CMS Tier 2 site at University of Nebraska-Lincoln and conduct benchmark, evaluation and validation studies

A software approach for readout and data acquisition in CMS

Traditional systems dominated by performance constraints tend to neglect other qualities such as maintainability and configurability. Object-Orientation allows one to encapsulate the technology differences in communication sub-systems and to provide a uniform view of data transport layer to the systems engineer. We applied this paradigm to the design and implementation of intelligent data servers in the Compact Muon Solenoid (CMS) data acquisition system at CERN to easily exploiting the physical communication resources of the available equipment. CMS is a high-energy physics experiment under study that incorporates a highly distributed data acquisition system. This paper outlines the architecture of one part, the so called Readout Unit, and shows how we can exploit the object advantage for systems with specific data rate requirements. A C++ streams communication layer with zero copying functionality has been established for UDP, TCP, DLPI and specific Myrinet and VME bus communication on the VxWorks real-time operating system. This software provides performance close to the hardware channel and hides communication details from the application programmers. (28 refs)

Enabling Runtime Self-Coordination of Reconfigurable Embedded Smart Cameras in Distributed Networks

Smart camera networks are real-time distributed embedded systems able to perform computer vision using multiple cameras. This new approach is a confluence of four major disciplines (computer vision, image sensors, embedded computing and sensor networks) and has been subject of intensive work in the past decades. The recent advances in computer vision and network communication, and the rapid growing in the field of high-performance computing, especially using reconfigurable devices, have enabled the design of more robust smart camera systems. Despite these advancements, the effectiveness of current networked vision systems (compared to their operating costs) is still disappointing; the main reason being the poor coordination among cameras entities at runtime and the lack of a clear formalism to dynamically capture and address the self-organization problem without relying on human intervention. In this dissertation, we investigate the use of a declarative-based modeling approach for capturing runtime self-coordination. We combine modeling approaches borrowed from logic programming, computer vision techniques, and high-performance computing for the design of an autonomous and cooperative smart camera. We propose a compact modeling approach based on Answer Set Programming for architecture synthesis of a system-on-reconfigurable-chip camera that is able to support the runtime cooperative work and collaboration with other camera nodes in a distributed network setup. Additionally, we propose a declarative approach for modeling runtime camera self-coordination for distributed object tracking in which moving targets are handed over in a distributed manner and recovered in case of node failure

Automatic Generation of Distributed System Simulations from UML

Nowadays, an object-oriented approach is commonly used for building computer systems. The benefits of the object-oriented method, such as scalability, stability and reusability, make this method suitable for building complex systems, including those in the distributed system area. A distributed system application usually needs to satisfy quite stringent requirements such as reliability, availability, security, etc. and the cost of building such an application will be quite high. It is therefore desirable to be able to predict the performance of the proposed system before the construction begins. In order to do this, it is important to evaluate the requirements of the new system and translate them into a specification (design). The design process helps the system developers to understand the requirements better as well as to avoid misconceptions about the system. From the specification, a simulation program can be built to mimic the execution of the proposed system. The simulation run provides some data about the states of the system and from these data, the performance of the system can be predicted and analysed. UML (Unified Modeling Language) is one example of the object-oriented design methods that has been widely used for specifying system requirements. There are also some object-oriented simulation languages/packages available, for example, SIMULA or C++SIM package, but it is often difficult to transform the system’ s requirements into a simulation program without sound knowledge of some simulation techniques. On top of that, a new simulation program needs to be built each time for different systems, which can be quite tedious. The currently available UML tools do not provide a feature to generate simulation programs automatically from UML specifications. In this paper, we describe a tool for constructing simulation programs in a generic way, based on a simple specification (preferably in a UML notation) by identifying the simulation components and their structure

Adaptive sampling-based profiling techniques for optimizing the distributed JVM runtime

Extending the standard Java virtual machine (JVM) for cluster-awareness is a transparent approach to scaling out multithreaded Java applications. While this clustering solution is gaining momentum in recent years, efficient runtime support for fine-grained object sharing over the distributed JVM remains a challenge. The system efficiency is strongly connected to the global object sharing profile that determines the overall communication cost. Once the sharing or correlation between threads is known, access locality can be optimized by collocating highly correlated threads via dynamic thread migrations. Although correlation tracking techniques have been studied in some page-based sof Tware DSM systems, they would entail prohibitively high overheads and low accuracy when ported to fine-grained object-based systems. In this paper, we propose a lightweight sampling-based profiling technique for tracking inter-thread sharing. To preserve locality across migrations, we also propose a stack sampling mechanism for profiling the set of objects which are tightly coupled with a migrant thread. Sampling rates in both techniques can vary adaptively to strike a balance between preciseness and overhead. Such adaptive techniques are particularly useful for applications whose sharing patterns could change dynamically. The profiling results can be exploited for effective thread-to-core placement and dynamic load balancing in a distributed object sharing environment. We present the design and preliminary performance result of our distributed JVM with the profiling implemented. Experimental results show that the profiling is able to obtain over 95% accurate global sharing profiles at a cost of only a few percents of execution time increase for fine- to medium- grained applications. © 2010 IEEE.published_or_final_versionThe 24th IEEE International Symposium on Parallel & Distributed Processing (IPDPS 2010), Atlanta, GA., 19-23 April 2010. In Proceedings of the 24th IPDPS, 2010, p. 1-1