The Mont-Blanc prototype: an alternative approach for high-performance computing systems

High-performance computing (HPC) is recognized as one of the pillars for further advance of science, industry, medicine, and education. Current HPC systems are being developed to overcome emerging challenges in order to reach Exascale level of performance,which is expected by the year 2020. The much larger embedded and mobile market allows for rapid development of IP blocks, and provides more flexibility in designing an application-specific SoC, in turn giving possibility in balancing performance, energy-efficiency and cost. In the Mont-Blanc project, we advocate for HPC systems be built from such commodity IP blocks, currently used in embedded and mobile SoCs. As a first demonstrator of such approach, we present the Mont-Blanc prototype; the first HPC system built with commodity SoCs, memories, and NICs from the embedded and mobile domain, and off-the-shelf HPC networking, storage, cooling and integration solutions. We present the system’s architecture, and evaluation including both performance and energy efficiency. Further, we compare the system’s abilities against a production level supercomputer. At the end, we discuss parallel scalability, and estimate the maximum scalability point of this approach across a set of HPC applications.Postprint (published version

Energy Efficiency in High Throughput Computing Tools, techniques and experi- ments

The volume of data to process and store in high throughput computing (HTC) and scientific computing continues increasing many-fold every year. Consequently, the energy consumption of data centers and similar facilities is raising economical and environmental concerns. Thus, it is of paramount importance to improve energy efficiency in such environments. This thesis focuses on understanding how to improve energy efficiency in scientific computing and HTC. For this purpose we conducted research on tools and techniques to measure power consumption. We also conducted experiments to understand if low-energy processing architectures are suitable for HTC and compared the energy efficiency of ARM and Intel ar- chitectures under authentic scientific workloads. Finally, we used the results to develop an algorithm that schedules tasks among ARM and Intel machines in a dynamic electricity pricing market in order to optimally lower the overall electric- ity bill. Our contributions are three-fold: The results of the study indicate that ARM has potential for being used in scientific and HTC from an energy efficiency perspective; We also outlined a set of tools and techniques to accurately measure energy consumption at the different levels of the computing systems; In addiciton, the developed scheduling algorithm shows potential savings in the electrical bill when applied to heterogeneous data centers working under a dynamic electricity pricing market

Enabling the use of embedded and mobile technologies for high-performance computing

In the late 1990s, powerful economic forces led to the adoption of commodity desktop processors in High-Performance Computing(HPC). This transformation has been so effective that the November 2016 TOP500 list is still dominated by x86 architecture. In 2016, the largest commodity market in computing is not PCs or servers, but mobile computing, comprising smartphones andtablets, most of which are built with ARM-based Systems on Chips (SoC). This suggests that once mobile SoCs deliver sufficient performance, mobile SoCs can help reduce the cost of HPC. This thesis addresses this question in detail.We analyze the trend in mobile SoC performance, comparing it with the similar trend in the 1990s. Through development of real system prototypes and their performance analysis we assess the feasibility of building an HPCsystem based on mobile SoCs. Through simulation of the future mobile SoC, we identify the missing features and suggest improvements that would enable theuse of future mobile SoCs in HPC environment. Thus, we present design guidelines for future generations mobile SoCs, and HPC systems built around them, enabling the newclass of cheap supercomputers.A finales de la década de los 90, razones económicas llevaron a la adopción de procesadores de uso general en sistemas de Computación de Altas Prestaciones (HPC). Esta transformación ha sido tan efectiva que la lista TOP500 de noviembre de 2016 sigue aun dominada por la arquitectura x86. En 2016, el mayor mercado de productos básicos en computación no son los ordenadores de sobremesa o los servidores, sino la computación móvil, que incluye teléfonos inteligentes y tabletas, la mayoría de los cuales están construidos con sistemas en chip(SoC) de arquitectura ARM. Esto sugiere que una vez que los SoC móviles ofrezcan un rendimiento suficiente, podrán utilizarse para reducir el costo desistemas HPC. Esta tesis aborda esta cuestión en detalle. Analizamos la tendencia del rendimiento de los SoC para móvil, comparándola con la tendencia similar ocurrida en los añosnoventa. A través del desarrollo de prototipos de sistemas reales y su análisis de rendimiento, evaluamos la factibilidad de construir unsistema HPC basado en SoCs móviles. A través de la simulación de SoCs móviles futuros, identificamos las características que faltan y sugerimos mejoras quepermitirían su uso en entornos HPC. Por lo tanto, presentamos directrices de diseño para futuras generaciones de SoCs móviles y sistemas HPC construidos a sualrededor, para permitir la construcción de una nueva clase de supercomputadores de coste reducido

Knowledge is power: Quantum chemistry on novel computer architectures

In the first chapter of this thesis, a background of fundamental quantum chemistry concepts is provided. Chapter two contains an analysis of the performance and energy efficiency of various modern computer processor architectures while performing computational chemistry calculations. In chapter three, the processor architectural study is expanded to include parallel computational chemistry algorithms executed across multiple-node computer clusters. Chapter four describes a novel computational implementation of the fundamental Hartree-Fock method which significantly reduces computer memory requirements. In chapter five, a case study of quantum chemistry two-electron integral code interoperability is described. The final chapters of this work discuss applications of quantum chemistry. In chapter six, an investigation of the esterification of acetic acid on acid-functionalized silica is presented. In chapter seven, the application of ab initio molecular dynamics to study the photoisomerization and photocyclization of stilbene is discussed. Final concluding remarks are noted in chapter eight

Evaluation of low-power architectures in a scientific computing environment

HPC (High Performance Computing) represents, together with theory and experiments, the third pillar of science. Through HPC, scientists can simulate phenomena otherwise impossible to study. The need of performing larger and more accurate simulations requires to HPC to improve every day. HPC is constantly looking for new computational platforms that can improve cost and power efficiency. The Mont-Blanc project is a EU funded research project that targets to study new hardware and software solutions that can improve efficiency of HPC systems. The vision of the project is to leverage the fast growing market of mobile devices to develop the next generation supercomputers. In this work we contribute to the objectives of the Mont-Blanc project by evaluating performance of production scientific applications on innovative low power architectures. In order to do so, we describe our experiences porting and evaluating sate of the art scientific applications on the Mont-Blanc prototype, the first HPC system built with commodity low power embedded technology. We then extend our study to compare off-the-shelves ARMv8 platforms. We finally discuss the most impacting issues encountered during the development of the Mont-Blanc prototype system

An Experimental Evaluation of Datacenter Workloads On Low-Power Embedded Micro Servers

This paper presents a comprehensive evaluation of an ultra-low power cluster, built upon the Intel Edison based micro servers. The improved performance and high energy efficiency of micro servers have driven both academia and industry to explore the possibility of replacing conventional brawny servers with a larger swarm of embedded micro servers. Existing attempts mostly focus on mobile-class micro servers, whose capacities are similar to mobile phones. We, on the other hand, target on sensor-class micro servers, which are originally intended for uses in wearable technologies, sensor networks, and Internet-of-Things. Although sensor-class micro servers have much less capacity, they are touted for minimal power consumption (< 1 Watt), which opens new possibilities of achieving higher energy efficiency in datacenter workloads. Our systematic evaluation of the Edison cluster and comparisons to conventional brawny clusters involve careful workload choosing and laborious parameter tuning, which ensures maximum server utilization and thus fair comparisons. Results show that the Edison cluster achieves up to 3.5× improvement on work-done-per-joule for web service applications and data-intensive MapReduce jobs. In terms of scalability, the Edison cluster scales linearly on the throughput of web service workloads, and also shows satisfactory scalability for MapReduce workloads despite coordination overhead.This research was supported in part by NSF grant 13-20209.Ope