Turbo Decoding and Detection for Wireless Applications

A historical perspective of turbo coding and turbo transceivers inspired by the generic turbo principles is provided, as it evolved from Shannon’s visionary predictions. More specifically, we commence by discussing the turbo principles, which have been shown to be capable of performing close to Shannon’s capacity limit. We continue by reviewing the classic maximum a posteriori probability decoder. These discussions are followed by studying the effect of a range of system parameters in a systematic fashion, in order to gauge their performance ramifications. In the second part of this treatise, we focus our attention on the family of iterative receivers designed for wireless communication systems, which were partly inspired by the invention of turbo codes. More specifically, the family of iteratively detected joint coding and modulation schemes, turbo equalization, concatenated spacetime and channel coding arrangements, as well as multi-user detection and three-stage multimedia systems are highlighted

"Going back to our roots": second generation biocomputing

Researchers in the field of biocomputing have, for many years, successfully "harvested and exploited" the natural world for inspiration in developing systems that are robust, adaptable and capable of generating novel and even "creative" solutions to human-defined problems. However, in this position paper we argue that the time has now come for a reassessment of how we exploit biology to generate new computational systems. Previous solutions (the "first generation" of biocomputing techniques), whilst reasonably effective, are crude analogues of actual biological systems. We believe that a new, inherently inter-disciplinary approach is needed for the development of the emerging "second generation" of bio-inspired methods. This new modus operandi will require much closer interaction between the engineering and life sciences communities, as well as a bidirectional flow of concepts, applications and expertise. We support our argument by examining, in this new light, three existing areas of biocomputing (genetic programming, artificial immune systems and evolvable hardware), as well as an emerging area (natural genetic engineering) which may provide useful pointers as to the way forward.Comment: Submitted to the International Journal of Unconventional Computin

The Evaluated Measurement of a Combined Genetic Algorithm and Artificial Immune System

This paper demonstrates a hybrid between two optimization methods which are the Artificial Immune System (AIS) and Genetic Algorithm (GA). The novel algorithm called the immune genetic algorithm (IGA), provides improvement to the results that enable GA and AIS to work separately which is the main objective of this hybrid. Negative selection which is one of the techniques in the AIS, was employed to determine the input variables (populations) of the system. In order to illustrate the effectiveness of the IGA, the comparison with a steady-state GA, AIS, and PSO were also investigated. The testing of the performance was conducted by mathematical testing, problems were divided into single and multiple objectives. The five single objectives were then used to test the modified algorithm, the results showed that IGA performed better than all of the other methods. The DTLZ multiobjective testing functions were then used. The result also illustrated that the modified approach still had the best performance

A Review of the Family of Artificial Fish Swarm Algorithms: Recent Advances and Applications

The Artificial Fish Swarm Algorithm (AFSA) is inspired by the ecological behaviors of fish schooling in nature, viz., the preying, swarming, following and random behaviors. Owing to a number of salient properties, which include flexibility, fast convergence, and insensitivity to the initial parameter settings, the family of AFSA has emerged as an effective Swarm Intelligence (SI) methodology that has been widely applied to solve real-world optimization problems. Since its introduction in 2002, many improved and hybrid AFSA models have been developed to tackle continuous, binary, and combinatorial optimization problems. This paper aims to present a concise review of the family of AFSA, encompassing the original ASFA and its improvements, continuous, binary, discrete, and hybrid models, as well as the associated applications. A comprehensive survey on the AFSA from its introduction to 2012 can be found in [1]. As such, we focus on a total of {\color{blue}123} articles published in high-quality journals since 2013. We also discuss possible AFSA enhancements and highlight future research directions for the family of AFSA-based models.Comment: 37 pages, 3 figure

Fast randomized approximate string matching with succinct hash data structures

The high throughput of modern NGS sequencers coupled with the huge sizes of genomes currently analysed, poses always higher algorithmic challenges to align short reads quickly and accurately against a reference sequence. A crucial, additional, requirement is that the data structures used should be light. The available modern solutions usually are a compromise between the mentioned constraints: in particular, indexes based on the Burrows-Wheeler transform offer reduced memory requirements at the price of lower sensitivity, while hash-based text indexes guarantee high sensitivity at the price of significant memory consumption

An Evolutionary Algorithm to Generate Ellipsoid Detectors for Negative Selection

Negative selection is a process from the biological immune system that can be applied to two-class (self and nonself) classification problems. Negative selection uses only one class (self) for training, which results in detectors for the other class (nonself). This paradigm is especially useful for problems in which only one class is available for training, such as network intrusion detection. Previous work has investigated hyper-rectangles and hyper-spheres as geometric detectors. This work proposes ellipsoids as geometric detectors. First, the author establishes a mathematical model for ellipsoids. He develops an algorithm to generate ellipsoids by training on only one class of data. Ellipsoid mutation operators, an objective function, and a convergence technique are described for the evolutionary algorithm that generates ellipsoid detectors. Testing on several data sets validates this approach by showing that the algorithm generates good ellipsoid detectors. Against artificial data sets, the detectors generated by the algorithm match more than 90% of nonself data with no false alarms. Against a subset of data from the 1999 DARPA MIT intrusion detection data, the ellipsoids generated by the algorithm detected approximately 98% of nonself (intrusions) with an approximate 0% false alarm rate

Biologically inspired speaker verification

Speaker verification is an active research problem that has been addressed using a variety of different classification techniques. However, in general, methods inspired by the human auditory system tend to show better verification performance than other methods. In this thesis three biologically inspired speaker verification algorithms are presented