Pathways: Augmenting interoperability across scholarly repositories

In the emerging eScience environment, repositories of papers, datasets, software, etc., should be the foundation of a global and natively-digital scholarly communications system. The current infrastructure falls far short of this goal. Cross-repository interoperability must be augmented to support the many workflows and value-chains involved in scholarly communication. This will not be achieved through the promotion of single repository architecture or content representation, but instead requires an interoperability framework to connect the many heterogeneous systems that will exist. We present a simple data model and service architecture that augments repository interoperability to enable scholarly value-chains to be implemented. We describe an experiment that demonstrates how the proposed infrastructure can be deployed to implement the workflow involved in the creation of an overlay journal over several different repository systems (Fedora, aDORe, DSpace and arXiv).Comment: 18 pages. Accepted for International Journal on Digital Libraries special issue on Digital Libraries and eScienc

Report of the Stanford Linked Data Workshop

The Stanford University Libraries and Academic Information Resources (SULAIR) with the Council on Library and Information Resources (CLIR) conducted at week-long workshop on the prospects for a large scale, multi-national, multi-institutional prototype of a Linked Data environment for discovery of and navigation among the rapidly, chaotically expanding array of academic information resources. As preparation for the workshop, CLIR sponsored a survey by Jerry Persons, Chief Information Architect emeritus of SULAIR that was published originally for workshop participants as background to the workshop and is now publicly available. The original intention of the workshop was to devise a plan for such a prototype. However, such was the diversity of knowledge, experience, and views of the potential of Linked Data approaches that the workshop participants turned to two more fundamental goals: building common understanding and enthusiasm on the one hand and identifying opportunities and challenges to be confronted in the preparation of the intended prototype and its operation on the other. In pursuit of those objectives, the workshop participants produced:1. a value statement addressing the question of why a Linked Data approach is worth prototyping;2. a manifesto for Linked Libraries (and Museums and Archives and …);3. an outline of the phases in a life cycle of Linked Data approaches;4. a prioritized list of known issues in generating, harvesting & using Linked Data;5. a workflow with notes for converting library bibliographic records and other academic metadata to URIs;6. examples of potential “killer apps” using Linked Data: and7. a list of next steps and potential projects.This report includes a summary of the workshop agenda, a chart showing the use of Linked Data in cultural heritage venues, and short biographies and statements from each of the participants

Assigning Creative Commons Licenses to Research Metadata: Issues and Cases

This paper discusses the problem of lack of clear licensing and transparency of usage terms and conditions for research metadata. Making research data connected, discoverable and reusable are the key enablers of the new data revolution in research. We discuss how the lack of transparency hinders discovery of research data and make it disconnected from the publication and other trusted research outcomes. In addition, we discuss the application of Creative Commons licenses for research metadata, and provide some examples of the applicability of this approach to internationally known data infrastructures.Comment: 9 pages. Submitted to the 29th International Conference on Legal Knowledge and Information Systems (JURIX 2016), Nice (France) 14-16 December 201

A distributed architecture for efficient Web service discovery

open3noAlthough the definition of service-oriented architecture (SOA) included the presence of a service registry from the beginning, the first implementations (e.g., UDDI) did not really succeed mainly because of security and governance issues. This article tackles the problem by introducing DREAM (Distributed Registry by ExAMple): a publish/subscribe-based solution to integrate existing, different registries, along with a match-making approach to ease the publication and retrieval of services. DREAM fosters the interoperability among registry technologies and supports UDDI, ebXML Registry, and other registries. The publish/subscribe paradigm allows service providers to decide the services they want to publish, and requestors to be informed of the services that satisfy their interests. As for the match-making, DREAM supports different ways to evaluate the matching between published and required services. Besides presenting the architecture of DREAM and the different match-making opportunities, the article also describes the experiments conducted to evaluate proposed solutions.Baresi, Luciano; Miraz, Matteo; Plebani, PierluigiBaresi, Luciano; Miraz, Matteo; Plebani, Pierluig

Interoperability and FAIRness through a novel combination of Web technologies

Data in the life sciences are extremely diverse and are stored in a broad spectrum of repositories ranging from those designed for particular data types (such as KEGG for pathway data or UniProt for protein data) to those that are general-purpose (such as FigShare, Zenodo, Dataverse or EUDAT). These data have widely different levels of sensitivity and security considerations. For example, clinical observations about genetic mutations in patients are highly sensitive, while observations of species diversity are generally not. The lack of uniformity in data models from one repository to another, and in the richness and availability of metadata descriptions, makes integration and analysis of these data a manual, time-consuming task with no scalability. Here we explore a set of resource-oriented Web design patterns for data discovery, accessibility, transformation, and integration that can be implemented by any general- or special-purpose repository as a means to assist users in finding and reusing their data holdings. We show that by using off-the-shelf technologies, interoperability can be achieved atthe level of an individual spreadsheet cell. We note that the behaviours of this architecture compare favourably to the desiderata defined by the FAIR Data Principles, and can therefore represent an exemplar implementation of those principles. The proposed interoperability design patterns may be used to improve discovery and integration of both new and legacy data, maximizing the utility of all scholarly outputs

Dismantling the signposts to public health? NHS data under the Health and Social Care Act 2012

The Health and Social Care Act 2012 will replace the administrative structure of the NHS in England, currently based on the resident populations of defined geographical areas, with one that relates instead to the shifting populations of individuals registered with specific general practices at given points in time.1 This will radically change the longstanding basis for collecting data routinely about the health needs of local populations, making it difficult to monitor the effect of new legislation on the health of the population locally or nationally.2 3 We discuss some of the implications of the act for existing routine data systems and the production of routine statistics that underpin essential NHS functions, including monitoring healthcare provision and ensuring equity of access, allocation of resources, and measurement of outcomes

Web Services Discovery and Recommendation Based on Information Extraction and Symbolic Reputation

This paper shows that the problem of web services representation is crucial and analyzes the various factors that influence on it. It presents the traditional representation of web services considering traditional textual descriptions based on the information contained in WSDL files. Unfortunately, textual web services descriptions are dirty and need significant cleaning to keep only useful information. To deal with this problem, we introduce rules based text tagging method, which allows filtering web service description to keep only significant information. A new representation based on such filtered data is then introduced. Many web services have empty descriptions. Also, we consider web services representations based on the WSDL file structure (types, attributes, etc.). Alternatively, we introduce a new representation called symbolic reputation, which is computed from relationships between web services. The impact of the use of these representations on web service discovery and recommendation is studied and discussed in the experimentation using real world web services

Interoperability in the OpenDreamKit Project: The Math-in-the-Middle Approach

OpenDreamKit --- "Open Digital Research Environment Toolkit for the Advancement of Mathematics" --- is an H2020 EU Research Infrastructure project that aims at supporting, over the period 2015--2019, the ecosystem of open-source mathematical software systems. From that, OpenDreamKit will deliver a flexible toolkit enabling research groups to set up Virtual Research Environments, customised to meet the varied needs of research projects in pure mathematics and applications. An important step in the OpenDreamKit endeavor is to foster the interoperability between a variety of systems, ranging from computer algebra systems over mathematical databases to front-ends. This is the mission of the integration work package (WP6). We report on experiments and future plans with the \emph{Math-in-the-Middle} approach. This information architecture consists in a central mathematical ontology that documents the domain and fixes a joint vocabulary, combined with specifications of the functionalities of the various systems. Interaction between systems can then be enriched by pivoting off this information architecture.Comment: 15 pages, 7 figure

ネットワーク情報環境におけるメタデータの長期利用性向上のためのメタデータスキーマの来歴記述に関する研究

筑波大学 (University of Tsukuba)201