Ash Tree Identification Based on the Integration of Hyperspectral Imagery and High-density Lidar Data

Monitoring and management of ash trees has become particularly important in recent years due to the heightened risk of attack from the invasive pest, the emerald ash borer (EAB). However, distinguishing ash from other deciduous trees can be challenging. Both hyperspectral imagery and Light detection and ranging (LiDAR) data are two valuable data sources that are often used for tree species classification. Hyperspectral imagery measures detailed spectral reflectance related to the biochemical properties of vegetation, while LiDAR data measures the three-dimensional structure of tree crowns related to morphological characteristics. Thus, the accuracy of vegetation classification may be improved by combining both techniques. Therefore, the objective of this research is to integrate hyperspectral imagery and LiDAR data for improving ash tree identification. Specifically, the research aims include: 1) using LiDAR data for individual tree crowns segmentation; 2) using hyperspectral imagery for extraction of relative pure crown spectra; 3) fusing hyperspectral and LiDAR data for ash tree identification. It is expected that the classification accuracy of ash trees will be significantly improved with the integration of hyperspectral and LiDAR techniques. Analysis results suggest that, first, 3D crown structures of individual trees can be reconstructed using a set of generalized geometric models which optimally matched LiDAR-derived raster image, and crown widths can be further estimated using tree height and shape-related parameters as independent variables and ground measurement of crown widths as dependent variables. Second, with constrained linear spectral mixture analysis method, the fractions of all materials within a pixel can be extracted, and relative pure crown-scale spectra can be further calculated using illuminated-leaf fraction as weighting factors for tree species classification. Third, both crown shape index (SI) and coefficient of variation (CV) can be extracted from LiDAR data as invariant variables in tree’s life cycle, and improve ash tree identification by integrating with pixel-weighted crown spectra. Therefore, three major contributions of this research have been made in the field of tree species classification:1) the automatic estimation of individual tree crown width from LiDAR data by combining a generalized geometric model and a regression model, 2) the computation of relative pure crown-scale spectral reflectance using a pixel-weighting algorithm for tree species classification, 3) the fusion of shape-related structural features and pixel-weighted crown-scale spectral features for improving of ash tree identification

Light detection and ranging and hyperspectral data for estimation of forest biomass: a review

This review addresses the status of hyperspectral data, LiDAR data, and the fusion of these two data sources for forest biomass estimation in the last decade

Classification of Tree Species in a Diverse African Agroforestry Landscape Using Imaging Spectroscopy and Laser Scanning

Airborne imaging spectroscopy (IS) and laser scanning (ALS) have been explored widely for tree species classification during the past decades. However, African agroforestry areas, where a few exotic tree species are dominant and many native species occur less frequently, have not yet been studied. Obtaining maps of tree species would provide useful information for the characterization of agroforestry systems and detecting invasive species. Our objective was to study tree species classification in a diverse tropical landscape using IS and ALS data at the tree crown level, with primary interest in the exotic tree species. We performed multiple analyses based on different IS and ALS feature sets, identified important features using feature selection, and evaluated the impact of combining the two data sources. Given that a high number of tree species with limited sample size (499 samples for 31 species) was expected to limit the classification accuracy, we tested different approaches to group the species based on the frequency of their occurrence and Jeffries-Matusita (JM) distance. Surface reflectance at wavelengths between 400-450 nm and 750-800 nm, and height to crown width ratio, were identified as important features. Nonetheless, a selection of minimum noise fraction (MNF) transformed reflectance bands showed superior performance. Support vector machine classifier performed slightly better than the random forest classifier, but the improvement was not statistically significant for the best performing feature set. The highest F1-scores were achieved when each of the species was classified separately against a mixed group of all other species, which makes this approach suitable for invasive species detection. Our results are valuable for organizations working on biodiversity conservation and improving agroforestry practices, as we showed how the non-native Eucalyptus spp., Acacia mearnsii and Grevillea robusta (mean F1-scores 76%, 79% and 89%, respectively) trees can be mapped with good accuracy. We also found a group of six fruit bearing trees using JM distance, which was classified with mean F1-score of 65%. This was a useful finding, as these species could not be classified with acceptable accuracy individually, while they all share common economic and ecological importance.Peer reviewe

Remote detection of forest structure in the White Mountains of New Hampshire: An integration of waveform lidar and hyperspectral remote sensing data

The capability of waveform lidar, used singly and through integration with high-resolution spectral data, to describe and predict various aspects of the structure of a northern temperate forest is explored. Waveform lidar imagery was acquired in 1999 and 2003 over Bartlett Experimental Forest in the White Mountains of central New Hampshire using NASA\u27s airborne Laser Vegetation Imaging Sensor (LVIS). High-resolution spectral imagery from 1997 and 2003 was likewise acquired using NASA\u27s Airborne Visible/Infrared Imaging Spectrometer (AVIRIS). USDA Forest Service Northeastern Research Station (USFS NERS) 2001-2003 inventory data was used to define basal area, above-ground biomass, quadratic mean stem diameter and proportional species abundances within each of over 400 plots. Field plots scaled to LVIS footprints were also established. At the smallest scale, metrics derived from single LVIS footprints were strongly correlated with coincident forest measurements. At the larger scale of USFS NERS plots, strong correlations encompassing the full variability of the Forest Service data could not be established. Restrictions set by species composition and land-use, however, significantly improved both the descriptive and predictive power of the regression analyses. Higher amplitude values of 1999 LUIS ground return metrics obtained within two years of the January 1998 ice storm, were found to provide a spatial record of higher levels of canopy damage within older, unmanaged forest tracts. Subjected to repeated disturbance of intermediate severity over the time frame of decades, these particular tracts, predominately found on southeastern aspects, simultaneously support by levels of sugar maple abundance and low levels of sugar maple coarse woody debris. LVIS height metrics were used here to establish a statistical relationship with coarse woody debris data. The integration of waveform lidar with hyperspectral data did enhance the ability to remotely describe a number of common measures of forest structure. Compositional abundance patterns, however, were not improved over use of AVIRIS data alone. Maps predicting species abundance patterns (primarily derived from AVIRIS data) with coincident patterns of stem size (derived from LVIS data) can be created for several of the dominant tree species of this region. The results are the near equivalent of a field-based forest inventory

Urban forest ecosystem analysis using fused airborne hyperspectral and lidar data

Urban trees are strategically important in a city's effort to mitigate their carbon footprint, heat island effects, air pollution, and stormwater runoff. Currently, the most common method for quantifying urban forest structure and ecosystem function is through field plot sampling. However, taking intensive structural measurements on private properties throughout a city is difficult, and the outputs from sample inventories are not spatially explicit. The overarching goal of this dissertation is to develop methods for mapping urban forest structure and function using fused hyperspectral imagery and waveform lidar data at the individual tree crown scale. Urban forest ecosystem services estimated using the USDA Forest Service’s i-Tree Eco (formerly UFORE) model are based largely on tree species and leaf area index (LAI). Accordingly, tree species were mapped in my Santa Barbara, California study area for 29 species comprising >80% of canopy. Crown-scale discriminant analysis methods were introduced for fusing Airborne Visible Infrared Imaging Spectrometry (AVIRIS) data with a suite of lidar structural metrics (e.g., tree height, crown porosity) to maximize classification accuracy in a complex environment. AVIRIS imagery was critical to achieving an overall species-level accuracy of 83.4% while lidar data was most useful for improving the discrimination of small and morphologically unique species. LAI was estimated at both the field-plot scale using laser penetration metrics and at the crown scale using allometry. Agreement of the former with photographic estimates of gap fraction and the latter with allometric estimates based on field measurements was examined. Results indicate that lidar may be used reasonably to measure LAI in an urban environment lacking in continuous canopy and characterized by high species diversity. Finally, urban ecosystem services such as carbon storage and building energy-use modification were analyzed through combination of aforementioned methods and the i-Tree Eco modeling framework. The remote sensing methods developed in this dissertation will allow researchers to more precisely constrain urban ecosystem spatial analyses and equip cities to better manage their urban forest resource

Remote Sensing of Plant Biodiversity

This Open Access volume aims to methodologically improve our understanding of biodiversity by linking disciplines that incorporate remote sensing, and uniting data and perspectives in the fields of biology, landscape ecology, and geography. The book provides a framework for how biodiversity can be detected and evaluated—focusing particularly on plants—using proximal and remotely sensed hyperspectral data and other tools such as LiDAR. The volume, whose chapters bring together a large cross-section of the biodiversity community engaged in these methods, attempts to establish a common language across disciplines for understanding and implementing remote sensing of biodiversity across scales. The first part of the book offers a potential basis for remote detection of biodiversity. An overview of the nature of biodiversity is described, along with ways for determining traits of plant biodiversity through spectral analyses across spatial scales and linking spectral data to the tree of life. The second part details what can be detected spectrally and remotely. Specific instrumentation and technologies are described, as well as the technical challenges of detection and data synthesis, collection and processing. The third part discusses spatial resolution and integration across scales and ends with a vision for developing a global biodiversity monitoring system. Topics include spectral and functional variation across habitats and biomes, biodiversity variables for global scale assessment, and the prospects and pitfalls in remote sensing of biodiversity at the global scale

Remote Sensing of Plant Biodiversity

At last, here it is. For some time now, the world has needed a text providing both a new theoretical foundation and practical guidance on how to approach the challenge of biodiversity decline in the Anthropocene. This is a global challenge demanding global approaches to understand its scope and implications. Until recently, we have simply lacked the tools to do so. We are now entering an era in which we can realistically begin to understand and monitor the multidimensional phenomenon of biodiversity at a planetary scale. This era builds upon three centuries of scientific research on biodiversity at site to landscape levels, augmented over the past two decades by airborne research platforms carrying spectrometers, lidars, and radars for larger-scale observations. Emerging international networks of fine-grain in-situ biodiversity observations complemented by space-based sensors offering coarser-grain imagery—but global coverage—of ecosystem composition, function, and structure together provide the information necessary to monitor and track change in biodiversity globally. This book is a road map on how to observe and interpret terrestrial biodiversity across scales through plants—primary producers and the foundation of the trophic pyramid. It honors the fact that biodiversity exists across different dimensions, including both phylogenetic and functional. Then, it relates these aspects of biodiversity to another dimension, the spectral diversity captured by remote sensing instruments operating at scales from leaf to canopy to biome. The biodiversity community has needed a Rosetta Stone to translate between the language of satellite remote sensing and its resulting spectral diversity and the languages of those exploring the phylogenetic diversity and functional trait diversity of life on Earth. By assembling the vital translation, this volume has globalized our ability to track biodiversity state and change. Thus, a global problem meets a key component of the global solution. The editors have cleverly built the book in three parts. Part 1 addresses the theory behind the remote sensing of terrestrial plant biodiversity: why spectral diversity relates to plant functional traits and phylogenetic diversity. Starting with first principles, it connects plant biochemistry, physiology, and macroecology to remotely sensed spectra and explores the processes behind the patterns we observe. Examples from the field demonstrate the rising synthesis of multiple disciplines to create a new cross-spatial and spectral science of biodiversity. Part 2 discusses how to implement this evolving science. It focuses on the plethora of novel in-situ, airborne, and spaceborne Earth observation tools currently and soon to be available while also incorporating the ways of actually making biodiversity measurements with these tools. It includes instructions for organizing and conducting a field campaign. Throughout, there is a focus on the burgeoning field of imaging spectroscopy, which is revolutionizing our ability to characterize life remotely. Part 3 takes on an overarching issue for any effort to globalize biodiversity observations, the issue of scale. It addresses scale from two perspectives. The first is that of combining observations across varying spatial, temporal, and spectral resolutions for better understanding—that is, what scales and how. This is an area of ongoing research driven by a confluence of innovations in observation systems and rising computational capacity. The second is the organizational side of the scaling challenge. It explores existing frameworks for integrating multi-scale observations within global networks. The focus here is on what practical steps can be taken to organize multi-scale data and what is already happening in this regard. These frameworks include essential biodiversity variables and the Group on Earth Observations Biodiversity Observation Network (GEO BON). This book constitutes an end-to-end guide uniting the latest in research and techniques to cover the theory and practice of the remote sensing of plant biodiversity. In putting it together, the editors and their coauthors, all preeminent in their fields, have done a great service for those seeking to understand and conserve life on Earth—just when we need it most. For if the world is ever to construct a coordinated response to the planetwide crisis of biodiversity loss, it must first assemble adequate—and global—measures of what we are losing

Commercial forest species discrimination and mapping using cost effective multispectral remote sensing in midlands region of KwaZulu-Natal province, South Africa.

Masters Degree. University of KwaZulu-Natal, Pietermaritzburg, 2018.Discriminating forest species is critical for generating accurate and reliable information necessary for sustainable management and monitoring of forests. Remote sensing has recently become a valuable source of information in commercial forest management. Specifically, high spatial resolution sensors have increasingly become popular in forests mapping and management. However, the utility of such sensors is costly and have limited spatial coverage, necessitating investigation of cost effective, timely and readily available new generation sensors characterized by larger swath width useful for regional mapping. Therefore, this study sought to discriminate and map commercial forest species (i.e. E. dunii, E.grandis, E.mix, A.mearnsii, P.taedea and P.tecunumanii, P.elliotte) using cost effective multispectral sensors. The first objective of this study was to evaluate the utility of freely available Landsat 8 Operational Land Imager (OLI) in mapping commercial forest species. Using Partial Least Square Discriminant Analysis algorithm, results showed that Landsat 8 OLI and pan-sharpened version of Landsat 8 OLI image achieved an overall classification accuracy of 79 and 77.8%, respectively, while WorldView-2 used as a benchmark image, obtained 86.5%. Despite low spatial of resolution 30 m, result show that Landsat 8 OLI was reliable in discriminating forest species with reasonable and acceptable accuracy. This freely available imagery provides cheaper and accessible alternative that covers larger swath-width, necessary for regional and local forests assessment and management. The second objective was to examine the effectiveness of Sentinel-1 and 2 for commercial forest species mapping. With the use of Linear Discriminant Analysis, results showed an overall accuracy of 84% when using Sentinel 2 raw image as a standalone data. However, when Sentinel 2 was fused with Sentinel’s 1 Synthetic Aperture Radar (SAR) data, the overall accuracy increased to 88% using Vertical transmit/Horizontal receive (VH) polarization and 87% with Vertical transmit/Vertical receive (VV) polarization datasets. The utility of SAR data demonstrates capability for complementing Sentinel-2 multispectral imagery in forest species mapping and management. Overall, newly generated and readily available sensors demonstrated capability to accurately provide reliable information critical for mapping and monitoring of commercial forest species at local and regional scales

MAPPING FOREST STRUCTURE AND HABITAT CHARACTERISTICS USING LIDAR AND MULTI-SENSOR FUSION

This dissertation explored the combined use of lidar and other remote sensing data for improved forest structure and habitat mapping. The objectives were to quantify aboveground biomass and canopy dynamics and map habitat characteristics with lidar and /or fusion approaches. Structural metrics from lidar and spectral characteristics from hyperspectral data were combined for improving biomass estimates in the Sierra Nevada, California. Addition of hyperspectral metrics only marginally improved biomass estimates from lidar, however, predictions from lidar after species stratification of field data improved by 12%. Spatial predictions from lidar after species stratification of hyperspectral data also had lower errors suggesting this could be viable method for mapping biomass at landscape level. A combined analysis of the two datasets further showed that fusion could have considerably more value in understanding ecosystem and habitat characteristics. The second objective was to quantify canopy height and biomass changes in in the Sierra Nevada using lidar data acquired in 1999 and 2008. Direct change detection showed overall statistically significant positive height change at footprint level (ΔRH100 = 0.69 m, +/- 7.94 m). Across the landscape, ~20 % of height and biomass changes were significant with more than 60% being positive, suggesting regeneration from past disturbances and a small net carbon sink. This study added further evidence to the capabilities of waveform lidar in mapping canopy dynamics while highlighting the need for error analysis and rigorous field validation Lastly, fusion applications for habitat mapping were tested with radar, lidar and multispectral data in the Hubbard Brook Experimental Forest, New Hampshire. A suite of metrics from each dataset was used to predict multi-year presence for eight migratory songbirds with data mining methods. Results showed that fusion improved predictions for all datasets, with more than 25% improvement from radar alone. Spatial predictions from fusion were also consistent with known habitat preferences for the birds demonstrating the potential of multi- sensor fusion in mapping habitat characteristics. The main contribution of this research was an improved understanding of lidar and multi-sensor fusion approaches for applications in carbon science and habitat studies