Coupled modelling of land surface microwave interactions using ENVISAT ASAR data

In the last decades microwave remote sensing has proven its capability to provide valuable information about the land surface. New sensor generations as e.g. ENVISAT ASAR are capable to provide frequent imagery with an high information content. To make use of these multiple imaging capabilities, sophisticated parameter inversion and assimilation strategies have to be applied. A profound understanding of the microwave interactions at the land surface is therefore essential. The objective of the presented work is the analysis and quantitative description of the backscattering processes of vegetated areas by means of microwave backscattering models. The effect of changing imaging geometries is investigated and models for the description of bare soil and vegetation backscattering are developed. Spatially distributed model parameterisation is realized by synergistic coupling of the microwave scattering models with a physically based land surface process model. This enables the simulation of realistic SAR images, based on bioand geophysical parameters. The adequate preprocessing of the datasets is crucial for quantitative image analysis. A stringent preprocessing and sophisticated terrain geocoding and correction procedure is therefore suggested. It corrects the geometric and radiometric distortions of the image products and is taken as the basis for further analysis steps. A problem in recently available microwave backscattering models is the inadequate parameterisation of the surface roughness. It is shown, that the use of classical roughness descriptors, as the rms height and autocorrelation length, will lead to ambiguous model parameterisations. A new two parameter bare soil backscattering model is therefore recommended to overcome this drawback. It is derived from theoretical electromagnetic model simulations. The new bare soil surface scattering model allows for the accurate description of the bare soil backscattering coefficients. A new surface roughness parameter is introduced in this context, capable to describe the surface roughness components, affecting the backscattering coefficient. It is shown, that this parameter can be directly related to the intrinsic fractal properties of the surface. Spatially distributed information about the surface roughness is needed to derive land surface parameters from SAR imagery. An algorithm for the derivation of the new surface roughness parameter is therefore suggested. It is shown, that it can be derived directly from multitemporal SAR imagery. Starting from that point, the bare soil backscattering model is used to assess the vegetation influence on the signal. By comparison of the residuals between measured backscattering coefficients and those predicted by the bare soil backscattering model, the vegetation influence on the signal can be quantified. Significant difference between cereals (wheat and triticale) and maize is observed in this context. It is shown, that the vegetation influence on the signal can be directly derived from alternating polarisation data for cereal fields. It is dependant on plant biophysical variables as vegetation biomass and water content. The backscattering behaviour of a maize stand is significantly different from that of other cereals, due to its completely different density and shape of the plants. A dihedral corner reflection between the soil and the stalk is identified as the major source of backscattering from the vegetation. A semiempirical maize backscattering model is suggested to quantify the influences of the canopy over the vegetation period. Thus, the different scattering contributions of the soil and vegetation components are successfully separated. The combination of the bare soil and vegetation backscattering models allows for the accurate prediction of the backscattering coefficient for a wide range of surface conditions and variable incidence angles. To enable the spatially distributed simulation of the SAR backscattering coefficient, an interface to a process oriented land surface model is established, which provides the necessary input variables for the backscattering model. Using this synergistic, coupled modelling approach, a realistic simulation of SAR images becomes possible based on land surface model output variables. It is shown, that this coupled modelling approach leads to promising and accurate estimates of the backscattering coefficients. The remaining residuals between simulated and measured backscatter values are analysed to identify the sources of uncertainty in the model. A detailed field based analysis of the simulation results revealed that imprecise soil moisture predictions by the land surface model are a major source of uncertainty, which can be related to imprecise soil texture distribution and soil hydrological properties. The sensitivity of the backscattering coefficient to the soil moisture content of the upper soil layer can be used to generate soil moisture maps from SAR imagery. An algorithm for the inversion of soil moisture from the upper soil layer is suggested and validated. It makes use of initial soil moisture values, provided by the land surface process model. Soil moisture values are inverted by means of the coupled land surface backscattering model. The retrieved soil moisture results have an RMSE of 3.5 Vol %, which is comparable to the measurement accuracy of the reference field data. The developed models allow for the accurate prediction of the SAR backscattering coefficient. The various soil and vegetation scattering contributions can be separated. The direct interface to a physically based land surface process model allows for the spatially distributed modelling of the backscattering coefficient and the direct assimilation of remote sensing data into a land surface process model. The developed models allow for the derivation of static and dynamic landsurface parameters, as e.g. surface roughness, soil texture, soil moisture and biomass from remote sensing data and their assimilation in process models. They are therefore reliable tools, which can be used for sophisticated practice oriented problem solutions in manifold manner in the earth and environmental sciences

Landscape Impacts on Fish Community Structure and Food Chain Length in Prairie and Ozark Rivers

Rivers in the Ozark Highland ecoregion and Central Prairie ecoregion differ in land use and diversity, and these could impact food chain length. The primary factors controlling food chain length are not certain, but were considered. Fish and invertebrates were collected for stable isotope analysis and analyzed for trophic position. Land use was measured using remote sensing. Fish community structure was correlated to land use, but not necessarily to water quality. In particular, it appears that the amount of forest or agriculture is very important in determining fish and invertebrate stream community composition. Food chain length was related to neither the predicted hypotheses nor community structure. However, members of the family Cyprinidae were very common, and rivers where few cyprinids were captured had low food chain length. Food chain length is driven by many processes and the effects of landscape should be considered

Multiscale Imaging of Evapotranspiration

Evapotranspiration (ET; evaporation + transpiration) is central to a wide range of biological, chemical, and physical processes in the Earth system. Accurate remote sensing of ET is challenging due to the interrelated and generally scale dependent nature of the physical factors which contribute to the process. The evaporation of water from porous media like sands and soils is an important subset of the complete ET problem. Chapter 1 presents a laboratory investigation into this question, examining the effects of grain size and composition on the evolution of drying sands. The effects of composition are found to be 2-5x greater than the effects of grain size, indicating that differences in heating caused by differences in reflectance may dominate hydrologic differences caused by grain size variation. In order to relate the results of Chapter 1 to the satellite image archive, however, the question of information loss between hyperspectral (measurements at 100s of wavelength intervals) laboratory measurements and multispectral (≤ 12 wavelength intervals) satellite images must be addressed. Chapter 2 focuses on this question as applied to substrate materials such as sediment, soil, rock, and non-photosynthetic vegetation. The results indicate that the continuum that is resolved by multispectral sensors is sufficient to resolve the gradient between sand-rich and clay-rich soils, and that this gradient is also a dominant feature in hyperspectral mixing spaces where the actual absorptions can be resolved. Multispectral measurements can be converted to biogeophysically relevant quantities using spectral mixture analysis (SMA). However, retrospective multitemporal analysis first requires cross-sensor calibration of the mixture model. Chapter 3 presents this calibration, allowing multispectral image data to be used interchangeably throughout the Landsat 4-8 archive. In addition, a theoretical explanation is advanced for the observed superior scaling properties of SMA-derived fraction images over spectral indices. The physical quantities estimated by the spectral mixture model are then compared to simultaneously imaged surface temperature, as well as to the derived parameters of ET Fraction and Moisture Availability. SMA-derived vegetation abundance is found to produce substantially more informative ET maps, and SMA-derived substrate fraction is found to yield a surprisingly strong linear relationship with surface temperature. These results provide context for agricultural applications. Chapter 5 investigates the question of mapping and monitoring rice agricultural using optical and thermal satellite image time series. Thermal image time series are found to produce more accurate maps of rice presence/absence, but optical image time series are found to produce more accurate maps of rice crop timing. Chapter 6 takes a more global approach, investigating the spatial structure of agricultural networks for a diverse set of landscapes. Surprisingly consistent scaling relations are found. These relations are assessed in the context of a network-based approach to land cover analysis, with potential implications for the scale dependence of ET estimates. In sum, this thesis present a novel approach to improving ET estimation based on a synthesis of complementary laboratory measurements, satellite image analysis, and field observations. Alone, each of these independent sources of information provides novel insights. Viewed together, these insights form the basis of a more accurate and complete geophysical understanding of the ET phenomenon

EFFECTS OF SPATIAL RESOLUTION AND LANDSCAPE STRUCTURE ON LAND COVER CHARACTERIZATION

This dissertation addressed problems in scaling, problems that are among the main challenges in remote sensing. The principal objective of the research was to investigate the effects of changing spatial scale on the representation of land cover. A second objective was to determine the relationship between such effects, characteristics of landscape structure and scaling procedures. Four research issues related to spatial scaling were examined. They included: 1) the upscaling of Normalized Difference Vegetation Index (NDVI); 2) the effects of spatial scale on indices of landscape structure; 3) the representation of land cover databases at different spatial scales; and 4) the relationships between landscape indices and land cover area estimations. The overall bias resulting from non-linearity of NDVI in relation to spatial resolution is generally insignificant as compared to other factors such as influences of aerosols and water vapor. The bias is, however, related to land surface characteristics. Significant errors may be introduced in heterogeneous areas where different land cover types exhibit strong spectral contrast. Spatially upscaled SPOT and TM NDVIs have information content comparable with the AVHRR-derived NDVI: Indices of landscape structure and spatial resolution are generally related, but the exact forms of the relationships are subject to changes in other factors including the basic patch unit constituting a landscape and the proportional area of foreground land cover under consideration. The extent of agreement between spatially aggregated coarse resolution land cover datasets and full resolution datasets changes with the properties of the original datasets, including the pixel size and class definition. There are close relationships between landscape structure and class areas estimated from spatially aggregated land cover databases. The relationships, however, do not permit extension from one area to another. Inversion calibration across different geographic/ecological areas is, therefore, not feasible. Different rules govern the land cover area changes across resolutions when different upscaling methods are used. Special attention should be given to comparison between land cover maps derived using different methods

Soil Spatial Scaling: Modelling variability of soil properties across scales using legacy data

Understanding how soil variability changes with spatial scale is critical to our ability to understand and model soil processes at scales relevant to decision makers. This thesis uses legacy data to address the ongoing challenge of understanding soil spatial variability in a number of complementary ways. We use a range of information: precision agriculture studies; compiled point datasets; and remotely observed raster datasets. We use classical geostatistics, but introduce a new framework for comparing variability of spatial properties across scales. My thesis considers soil spatial variability from a number of geostatistical angles. We find the following: • Field scale variograms show differing variance across several magnitudes. Further work is required to ensure consistency between survey design, experimental methodology and statistical methodology if these results are to become useful for comparison. • Declustering is a useful tool to deal with the patchy design of legacy data. It is not a replacement for an evenly distributed dataset, but it does allow the use of legacy data which would otherwise have limited utility. • A framework which allows ‘roughness’ to be expressed as a continuous variable appears to fit the data better than the mono-fractal or multi-fractal framework generally associated with multi–scale modelling of soil spatial variability. • Soil appears to have a similar degree of stochasticity to short range topographic variability, and a higher degree of stochasticity at short ranges (less than 10km and 100km) than vegetation and Radiometrics respectively. • At longer ranges of variability (i.e. around 100km) only rainfall and height above sea level show distinctly different stochasticity. • Global variograms show strong isotropy, unlike the variograms for the Australian continent

Is there a solution to the spatial scale mismatch between ecological processes and agricultural management?

The major limit to develop robust landscape planning for biodiversity conservation is that the spatial levels of organization of landscape management by local actors rarely match with those of ecological processes. This problem, known as spatial scale mismatch, is recognized as a reason of lack of effectiveness of agri-environment schemes. We did a review to describe how authors identify the problem of spatial scale mismatch in the literature. The assumption is made that the solutions proposed in literature to conciliate agricultural management and conservation of biodiversity are based on theoretical frameworks that can be used to go towards an integration of management processes and ecological processes. Hierarchy Theory and Landscape Ecology are explicitly mobilized by authors who suggest multiscale and landscape scale approaches, respectively, to overcome the mismatch problem. Coordination in management is proposed by some authors but with no theoretical background explicitly mentioned. The theory of organization of biological systems and the theories of Social-Ecological Systems use the concept of coordination and integration as well as concepts of organization, adaptive capabilities and complexity of systems. These theories are useful to set up a new framework integrating ecological processes and agricultural management. Based on this review we made two hypotheses to explain difficulties to deal with spatial scale mismatch: (1) authors generally do not have an integrated approach since they consider separately ecological and management processes, and (2) an inaccurate use of terminology and theoretical frameworks partially explain the inadequacy of proposed solutions. We then specify some terms and highlight some ‘rules’ necessary to set up an integrative theoretical and methodological framework to deal with spatial scale mismatch.(Presentation des résumés n°186, p. 95-96, non paginé

Evaluation of remote sensing methods for continuous cover forestry

The overall aim of the project was to investigate the potential and challenges in the application of high spatial and spectral resolution remote sensing to forest stands in the UK for Continuous Cover Forestry (CCF) purposes. Within the context of CCF, a relatively new forest management strategy that has been implemented in several European countries, the usefulness of digital remote sensing techniques lie in their potential ability to retrieve parameters at sub-stand level and, in particular, in the assessment of natural regeneration and light regimes. The idea behind CCF is the support of a sustainable forest management system reducing disturbance of the forest ecosystem and encouraging the use of more natural methods, e.g. natural regeneration, for which the light environment beneath the forest canopy plays a fundamental role.The study was carried out at a test area in central Scotland, situated within the Queen Elizabeth II Forest Park (lat. 56°10' N, long. 4° 23' W). Six plots containing three different species (Norway spruce, European larch and Sessile oak), characterized by their different light regimes, were established within the area for the measurement of forest variables using a forest inventory approach and hemispherical photography. The remote sensing data available for the study consisted of Landsat ETM+ imagery, a small footprint multi-return lidar dataset over the study area, Airborne Thematic Mapper (ATM) data, and aerial photography with same acquisition date as the lidar data.Landsat ETM+ imagery was used for the spectral characterisation of the species under study and the evaluation of phenological change as a factor to consider for future acquisitions of remotely sensed imagery. Three approaches were used for the discrimination between species: raw data, NDVI, and Principal Component Analysis (PCA). It can be concluded that no single date is ideal for discriminating the species studied (early summer was best) and that a combination of two or three datasets covering their phenological cycles is optimal for the differentiation. Although the approaches used helped to characterize the forest species, especially to the discrimination between spruces, larch and the deciduous oak species, further work is needed in order to define an optimum approach to discriminate between spruce species (e.g. Sitka spruce and Norway spruce) for which spectral responses are very similar. In general, the useful ranges of the indices were small, so a careful and accurate preprocessing of the imagery is highly recommended.Lidar, ATM, and aerial photographic datasets were analysed for the characterisation of vertical and horizontal forest structure. A slope-based algorithm was developed for the extraction of ground elevation and tree heights from multiple return lidar data, the production of a Digital Terrain Model (DTM) and Digital Surface Model (DSM) of the area under study, and for the comparison of the predicted lidar tree heights with the true tree heights, followed by the building of a Digital Canopy Model (DCM) for the determination of percentage canopy cover and tree crown delineation. Mean height and individual tree heights were estimated for all sample plots. The results showed that lidar underestimated tree heights by an average of 1.49 m. The standard deviation of the lidar estimates was 3.58 m and the mean standard error was 0.38 m.This study assessed the utility of an object-oriented approach for deciduous and coniferous crown delineation, based on small-footprint, multiple return lidar data, high resolution ATM imagery, and aerial photography. Special emphasis in the analysis was made in the fusion of aerial photography and lidar data for tree crown detection and classification, as it was expected that the high vertical accuracy of lidar, combined with the high spatial resolution aerial photography would render the best results and would provide the forestry sector with an affordable and accurate means for forest management and planning. Most of the field surveyed trees could be automatically and correctly detected, especially for the spruce and larch plots, but the complexity of the deciduous plots hindered the tree recognition approach, leading to poor crown extent and gap estimations. Indicators of light availability were calculated from the lidar data by calculation of laser hit penetration rates and percentage canopy cover. These results were compared to estimates of canopy openness obtained from hemispherical pictures for the same locations.Finally, the synergistic benefits of all datasets were evaluated and the forest structural variables determined from remote sensing and hemispherical photography were examined as indicators of light availability for regenerating seedlings

Image Analysis and Machine Learning in Agricultural Research

Agricultural research has been a focus for academia and industry to improve human well-being. Given the challenges in water scarcity, global warming, and increased prices of fertilizer, and fossil fuel, improving the efficiency of agricultural research has become even more critical. Data collection by humans presents several challenges including: 1) the subjectiveness and reproducibility when doing the visual evaluation, 2) safety when dealing with high toxicity chemicals or severe weather events, 3) mistakes cannot be avoided, and 4) low efficiency and speed. Image analysis and machine learning are more versatile and advantageous in evaluating different plant characteristics, and this could help with agricultural data collection. In the first chapter, information related to different types of imaging (e.g., RGB, multi/hyperspectral, and thermal imaging) was explored in detail for its advantages in different agriculture applications. The process of image analysis demonstrated how target features were extracted for analysis including shape, edge, texture, and color. After acquiring features information, machine learning can be used to automatically detect or predict features of interest such as disease severity. In the second chapter, case studies of different agricultural applications were demonstrated including: 1) leaf damage symptoms, 2) stress evaluation, 3) plant growth evaluation, 4) stand/insect counting, and 5) evaluation for produce quality. Case studies showed that the use of image analysis is often more advantageous than visual rating. Advantages of image analysis include increased objectivity, speed, and more reproducibly reliable results. In the third chapter, machine learning was explored using romaine lettuce images from RD4AG to automatically grade for bolting and compactness (two of the important parameters for lettuce quality). Although the accuracy is at 68.4 and 66.6% respectively, a much larger data base and many improvements are needed to increase the model accuracy and reliability. With the advancement in cameras, computers with high computing power, and the development of different algorithms, image analysis and machine learning have the potential to replace part of the labor and improve the current data collection procedure in agricultural research. Advisor: Gary L. Hei

Information Assurance through Binary Vulnerability Auditing

The goal of this research is to develop improved methods of discovering vulnerabilities in software. A large volume of software, from the most frequently used programs on a desktop computer, such as web browsers, e-mail programs, and word processing applications, to mission-critical services for the space shuttle, is unintentionally vulnerable to attacks and thus insecure. By seeking to improve the identification of vulnerabilities in software, the security community can save the time and money necessary to restore compromised computer systems. In addition, this research is imperative to activities of national security such as counterterrorism. The current approach involves a systematic and complete analysis of the low-level organization of software systems in stark contrast to existing approaches which are either ad-hoc or unable to identify all buffer overflow vulnerabilities. The scope of this project is to develop techniques for identifying buffer overflows in closed-source software where only the software’s executable code is available. These techniques use a comprehensive analysis of the software system’s flow of execution called binary vulnerability auditing. Techniques for binary vulnerability auditing are grounded in science and, while unproven, are more complete than traditional ad-hoc approaches. Since there are several attack vectors in software, this research will focus on buffer overflows, the most common class of vulnerability

Meiosis

Meiosis, the process of forming gametes in preparation for sexual reproduction, has long been a focus of intense study. Meiosis has been studied at the cytological, genetic, molecular and cellular levels. Studies in model systems have revealed common underlying mechanisms while in parallel, studies in diverse organisms have revealed the incredible variation in meiotic mechanisms. This book brings together many of the diverse strands of investigation into this fascinating and challenging field of biology