Signal Processing Combined with Machine Learning for Biomedical Applications

The Master’s thesis is comprised of four projects in the realm of machine learning and signal processing. The abstract of the thesis is divided into four parts and presented as follows, Abstract 1: A Kullback-Leibler Divergence-Based Predictor for Inter-Subject Associative BCI. Inherent inter-subject variability in sensorimotor brain dynamics hinders the transferability of brain-computer interface (BCI) model parameters across subjects. An individual training session is essential for effective BCI control to compensate for variability. We report a Kullback-Leibler Divergence (KLD)-based predictor for inter-subject associative BCI. An online dataset comprising left/right hand, both feet, and tongue motor imagery tasks was used to show correlation between the proposed inter-subject predictor and BCI performance. Linear regression between the KLD predictor and BCI performance showed a strong inverse correlation (r = -0.62). The KLD predictor can act as an indicator for generalized inter-subject associative BCI designs. Abstract 2: Multiclass Sensorimotor BCI Based on Simultaneous EEG and fNIRS. Hybrid BCI (hBCI) utilizes multiple data modalities to acquire brain signals during motor execution (ME) tasks. Studies have shown significant enhancements in the classification of binary class ME-hBCIs; however, four-class ME-hBCI classification is yet to be done using multiclass algorithms. We present a quad-class classification of ME-hBCI tasks from simultaneous EEG-fNIRS recordings. Appropriate features were extracted from EEG-fNIRS signals and combined for hybrid features and classified with support vector machine. Results showed a significant increase in hybrid accuracy over single modalities and show hybrid method’s performance enhancement capability. Abstract 3: Deep Learning for Improved Inter-Subject EEG-fNIRS Hybrid BCI Performance. Multimodality based hybrid BCI has become famous for performance improvement; however, the inherent inter-subject and inter-session variation between participants brain dynamics poses obstacles in achieving high performance. This work presents an inter-subject hBCI to classify right/left-hand MI tasks from simultaneous EEG-fNIRS recordings of 29 healthy subjects. State-of-art features were extracted from EEG-fNIRS signals and combined for hybrid features, and finally, classified using deep Long short-term memory classifier. Results showed an increase in the inter-subject performance for the hybrid system while making the system more robust to brain dynamics change and hints to the feasibility of EEG-fNIRS based inter-subject hBCI. Abstract 4: Microwave Based Glucose Concentration Classification by Machine Learning. Non-invasive blood sugar measurement attracts increased attention in recent years, given the increase in diabetes-related complications and inconvenience in the traditional ways using blood. This work utilized machine learning (ML) algorithms to classify glucose concentration (GC) from the measured broadband microwave scattering signals (S11). An N-type microwave adapter pair was utilized to measure the sweeping frequency scattering-parameter (S-parameter) of the glucose solutions with GC varying from 50-10,000 dg/dL. Dielectric parameters were retrieved from the measured wideband complex S-parameters based on the modified Debye dielectric dispersion model. Results indicate that the best algorithm can achieve a perfect classification accuracy and suggests an alternate way to develop a GC detection method using ML algorithms

Support vector machines to detect physiological patterns for EEG and EMG-based human-computer interaction:a review

Support vector machines (SVMs) are widely used classifiers for detecting physiological patterns in human-computer interaction (HCI). Their success is due to their versatility, robustness and large availability of free dedicated toolboxes. Frequently in the literature, insufficient details about the SVM implementation and/or parameters selection are reported, making it impossible to reproduce study analysis and results. In order to perform an optimized classification and report a proper description of the results, it is necessary to have a comprehensive critical overview of the applications of SVM. The aim of this paper is to provide a review of the usage of SVM in the determination of brain and muscle patterns for HCI, by focusing on electroencephalography (EEG) and electromyography (EMG) techniques. In particular, an overview of the basic principles of SVM theory is outlined, together with a description of several relevant literature implementations. Furthermore, details concerning reviewed papers are listed in tables and statistics of SVM use in the literature are presented. Suitability of SVM for HCI is discussed and critical comparisons with other classifiers are reported

Brain Music : Sistema generativo para la creación de música simbólica a partir de respuestas neuronales afectivas

gráficas, tablasEsta tesis de maestría presenta una metodología de aprendizaje profundo multimodal innovadora que fusiona un modelo de clasificación de emociones con un generador musical, con el propósito de crear música a partir de señales de electroencefalografía, profundizando así en la interconexión entre emociones y música. Los resultados alcanzan tres objetivos específicos: Primero, ya que el rendimiento de los sistemas interfaz cerebro-computadora varía considerablemente entre diferentes sujetos, se introduce un enfoque basado en la transferencia de conocimiento entre sujetos para mejorar el rendimiento de individuos con dificultades en sistemas de interfaz cerebro-computadora basados en el paradigma de imaginación motora. Este enfoque combina datos de EEG etiquetados con datos estructurados, como cuestionarios psicológicos, mediante un método de "Kernel Matching CKA". Utilizamos una red neuronal profunda (Deep&Wide) para la clasificación de la imaginación motora. Los resultados destacan su potencial para mejorar las habilidades motoras en interfaces cerebro-computadora. Segundo, proponemos una técnica innovadora llamada "Labeled Correlation Alignment"(LCA) para sonificar respuestas neurales a estímulos representados en datos no estructurados, como música afectiva. Esto genera características musicales basadas en la actividad cerebral inducida por las emociones. LCA aborda la variabilidad entre sujetos y dentro de sujetos mediante el análisis de correlación, lo que permite la creación de envolventes acústicos y la distinción entre diferente información sonora. Esto convierte a LCA en una herramienta prometedora para interpretar la actividad neuronal y su reacción a estímulos auditivos. Finalmente, en otro capítulo, desarrollamos una metodología de aprendizaje profundo de extremo a extremo para generar contenido musical MIDI (datos simbólicos) a partir de señales de actividad cerebral inducidas por música con etiquetas afectivas. Esta metodología abarca el preprocesamiento de datos, el entrenamiento de modelos de extracción de características y un proceso de emparejamiento de características mediante Deep Centered Kernel Alignment, lo que permite la generación de música a partir de señales EEG. En conjunto, estos logros representan avances significativos en la comprensión de la relación entre emociones y música, así como en la aplicación de la inteligencia artificial en la generación musical a partir de señales cerebrales. Ofrecen nuevas perspectivas y herramientas para la creación musical y la investigación en neurociencia emocional. Para llevar a cabo nuestros experimentos, utilizamos bases de datos públicas como GigaScience, Affective Music Listening y Deap Dataset (Texto tomado de la fuente)This master’s thesis presents an innovative multimodal deep learning methodology that combines an emotion classification model with a music generator, aimed at creating music from electroencephalography (EEG) signals, thus delving into the interplay between emotions and music. The results achieve three specific objectives: First, since the performance of brain-computer interface systems varies significantly among different subjects, an approach based on knowledge transfer among subjects is introduced to enhance the performance of individuals facing challenges in motor imagery-based brain-computer interface systems. This approach combines labeled EEG data with structured information, such as psychological questionnaires, through a "Kernel Matching CKA"method. We employ a deep neural network (Deep&Wide) for motor imagery classification. The results underscore its potential to enhance motor skills in brain-computer interfaces. Second, we propose an innovative technique called "Labeled Correlation Alignment"(LCA) to sonify neural responses to stimuli represented in unstructured data, such as affective music. This generates musical features based on emotion-induced brain activity. LCA addresses variability among subjects and within subjects through correlation analysis, enabling the creation of acoustic envelopes and the distinction of different sound information. This makes LCA a promising tool for interpreting neural activity and its response to auditory stimuli. Finally, in another chapter, we develop an end-to-end deep learning methodology for generating MIDI music content (symbolic data) from EEG signals induced by affectively labeled music. This methodology encompasses data preprocessing, feature extraction model training, and a feature matching process using Deep Centered Kernel Alignment, enabling music generation from EEG signals. Together, these achievements represent significant advances in understanding the relationship between emotions and music, as well as in the application of artificial intelligence in musical generation from brain signals. They offer new perspectives and tools for musical creation and research in emotional neuroscience. To conduct our experiments, we utilized public databases such as GigaScience, Affective Music Listening and Deap DatasetMaestríaMagíster en Ingeniería - Automatización IndustrialInvestigación en Aprendizaje Profundo y señales BiológicasEléctrica, Electrónica, Automatización Y Telecomunicaciones.Sede Manizale

A Review on EEG Signals Based Emotion Recognition

Emotion recognition has become a very controversial issue in brain-computer interfaces (BCIs). Moreover, numerous studies have been conducted in order to recognize emotions. Also, there are several important definitions and theories about human emotions. In this paper we try to cover important topics related to the field of emotion recognition. We review several studies which are based on analyzing electroencephalogram (EEG) signals as a biological marker in emotion changes. Considering low cost, good time and spatial resolution, EEG has become very common and is widely used in most BCI applications and studies. First, we state some theories and basic definitions related to emotions. Then some important steps of an emotion recognition system like different kinds of biologic measurements (EEG, electrocardiogram [EEG], respiration rate, etc), offline vs online recognition methods, emotion stimulation types and common emotion models are described. Finally, the recent and most important studies are reviewed

A Brain-Computer Interface based on Colour Dependent Visual Attention

In this thesis we designed a specific visual protocol for a new application in the brain-computer interface field. We evaluated how coloured stimuli affect brain activity in health

Intelligent Biosignal Processing in Wearable and Implantable Sensors

This reprint provides a collection of papers illustrating the state-of-the-art of smart processing of data coming from wearable, implantable or portable sensors. Each paper presents the design, databases used, methodological background, obtained results, and their interpretation for biomedical applications. Revealing examples are brain–machine interfaces for medical rehabilitation, the evaluation of sympathetic nerve activity, a novel automated diagnostic tool based on ECG data to diagnose COVID-19, machine learning-based hypertension risk assessment by means of photoplethysmography and electrocardiography signals, Parkinsonian gait assessment using machine learning tools, thorough analysis of compressive sensing of ECG signals, development of a nanotechnology application for decoding vagus-nerve activity, detection of liver dysfunction using a wearable electronic nose system, prosthetic hand control using surface electromyography, epileptic seizure detection using a CNN, and premature ventricular contraction detection using deep metric learning. Thus, this reprint presents significant clinical applications as well as valuable new research issues, providing current illustrations of this new field of research by addressing the promises, challenges, and hurdles associated with the synergy of biosignal processing and AI through 16 different pertinent studies. Covering a wide range of research and application areas, this book is an excellent resource for researchers, physicians, academics, and PhD or master students working on (bio)signal and image processing, AI, biomaterials, biomechanics, and biotechnology with applications in medicine

Status of deep learning for EEG-based brain–computer interface applications

In the previous decade, breakthroughs in the central nervous system bioinformatics and computational innovation have prompted significant developments in brain–computer interface (BCI), elevating it to the forefront of applied science and research. BCI revitalization enables neurorehabilitation strategies for physically disabled patients (e.g., disabled patients and hemiplegia) and patients with brain injury (e.g., patients with stroke). Different methods have been developed for electroencephalogram (EEG)-based BCI applications. Due to the lack of a large set of EEG data, methods using matrix factorization and machine learning were the most popular. However, things have changed recently because a number of large, high-quality EEG datasets are now being made public and used in deep learning-based BCI applications. On the other hand, deep learning is demonstrating great prospects for solving complex relevant tasks such as motor imagery classification, epileptic seizure detection, and driver attention recognition using EEG data. Researchers are doing a lot of work on deep learning-based approaches in the BCI field right now. Moreover, there is a great demand for a study that emphasizes only deep learning models for EEG-based BCI applications. Therefore, we introduce this study to the recent proposed deep learning-based approaches in BCI using EEG data (from 2017 to 2022). The main differences, such as merits, drawbacks, and applications are introduced. Furthermore, we point out current challenges and the directions for future studies. We argue that this review study will help the EEG research community in their future research

Hybrid High-order Functional Connectivity Networks Using Resting-state Functional MRI for Mild Cognitive Impairment Diagnosis

Conventional functional connectivity (FC), referred to as low-order FC, estimates temporal correlation of the resting-state functional magnetic resonance imaging (rs-fMRI) time series between any pair of brain regions, simply ignoring the potentially high-level relationship among these brain regions. A high-order FC based on "correlation's correlation" has emerged as a new approach for abnormality detection of brain disease. However, separate construction of the low- and high-order FC networks overlooks information exchange between the two FC levels. Such a higher-level relationship could be more important for brain diseases study. In this paper, we propose a novel framework, namely "hybrid high-order FC networks" by exploiting the higher-level dynamic interaction among brain regions for early mild cognitive impairment (eMCI) diagnosis. For each sliding window-based rs-fMRI sub-series, we construct a whole-brain associated high-order network, by estimating the correlations between the topographical information of the high-order FC sub-network from one brain region and that of the low-order FC sub-network from another brain region. With multi-kernel learning, complementary features from multiple time-varying FC networks constructed at different levels are fused for eMCI classification. Compared with other state-of-the-art methods, the proposed framework achieves superior diagnosis accuracy, and hence could be promising for understanding pathological changes of brain connectome

Brain Computer Interfaces and Emotional Involvement: Theory, Research, and Applications

This reprint is dedicated to the study of brain activity related to emotional and attentional involvement as measured by Brain–computer interface (BCI) systems designed for different purposes. A BCI system can translate brain signals (e.g., electric or hemodynamic brain activity indicators) into a command to execute an action in the BCI application (e.g., a wheelchair, the cursor on the screen, a spelling device or a game). These tools have the advantage of having real-time access to the ongoing brain activity of the individual, which can provide insight into the user’s emotional and attentional states by training a classification algorithm to recognize mental states. The success of BCI systems in contemporary neuroscientific research relies on the fact that they allow one to “think outside the lab”. The integration of technological solutions, artificial intelligence and cognitive science allowed and will allow researchers to envision more and more applications for the future. The clinical and everyday uses are described with the aim to invite readers to open their minds to imagine potential further developments