Unconventional programming: non-programmable systems

Die Forschung aus dem Bereich der unkonventionellen und natürlichen Informationsverarbeitungssysteme verspricht kontrollierbare Rechenprozesse in ungewöhnlichen Medien zu realisieren, zum Beispiel auf der molekularen Ebene oder in Bakterienkolonien. Vielversprechende Eigenschaften dieser Systeme sind das nichtlineare Verhalten und der hohe Verknüpfungsgrad der beteiligten Komponenten in Analogie zu Neuronen im Gehirn. Da aber Programmierung meist auf Prinzipien wie Modularisierung, Kapselung und Vorhersagbarkeit beruht sind diese Systeme oft schwer- bzw. unprogrammierbar. Im Gegensatz zu vielen Arbeiten über unkonventionelle Rechensysteme soll in dieser Arbeit aber nicht hauptsächlich nach neuen rechnenden Systemen und Anwendungen dieser gesucht werden. Stattdessen konzentriert sich diese Dissertation auf unkonventionelle Programmieransätze, die sowohl für unkonventionelle Computer als auch für herkommliche digitale Rechner neue Perspektiven eröffnen sollen. Hauptsächlich in Bezug auf ein Modell künstlicher chemischer Neuronen werden Ansätze für unkonventionelle Programmierverfahren, basierend auf Evolutionären Algorithmen, Informationstheorie und Selbstorganisation bis hin zur Selbstassemblierung untersucht. Ein spezielles Augenmerk liegt dabei auf dem Problem der Symbolkodierung: Oft gibt es mehrere oder sogar unendlich viele Möglichkeiten, Informationen in den Zuständen eines komplexen dynamischen Systems zu kodieren. In Neuronalen Netzen gibt es unter anderem die Spikefrequenz aber auch Populationskodes. In Abhängigkeit von den weiteren Eigenschaften des Systems, beispielsweise von der Informationsverarbeitungsaufgabe und dem gewünschten Eingabe-Ausgabeverhalten dürften sich verschiedene Kodierungen als unterschiedlich nützlich erweisen. Daher werden hier Methoden betrachtet um die verschiedene Symbolkodierungmethoden zu evaluieren, zu analysieren und um nach neuen, geeigneten Kodierungen zu suchen.Unconventional and natural computing research offers controlled information modification processes in uncommon media, for example on the molecular scale or in bacteria colonies. Promising aspects of such systems are often the non-linear behavior and the high connectivity of the involved information processing components in analogy to neurons in the nervous system. Unfortunately, such properties make the system behavior hard to understand, hard to predict and thus also hard to program with common engineering principles like modularization and composition, leading to the term of non-programmable systems. In contrast to many unconventional computing works that are often focused on finding novel computing substrates and potential applications, unconventional programming approaches for such systems are the theme of this thesis: How can new programming concepts open up new perspectives for unconventional but hopefully also for traditional, digital computing systems? Mostly based on a model of artificial wet chemical neurons, different unconventional programming approaches from evolutionary algorithms, information theory, self-organization and self-assembly are explored. A particular emphasis is given on the problem of symbol encodings: Often there are multiple or even an unlimited number of possibilities to encode information in the phase space of dynamical systems, e.g. spike frequencies or population coding in neural networks. But different encodings will probably be differently useful, dependent on the system properties, the information transformation task and the desired connectivity to other systems. Hence methods are investigated that can evaluate, analyse as well as identify suitable symbol encoding schemes

Opinions and Outlooks on Morphological Computation

Morphological Computation is based on the observation that biological systems seem to carry out relevant computations with their morphology (physical body) in order to successfully interact with their environments. This can be observed in a whole range of systems and at many different scales. It has been studied in animals – e.g., while running, the functionality of coping with impact and slight unevenness in the ground is "delivered" by the shape of the legs and the damped elasticity of the muscle-tendon system – and plants, but it has also been observed at the cellular and even at the molecular level – as seen, for example, in spontaneous self-assembly. The concept of morphological computation has served as an inspirational resource to build bio-inspired robots, design novel approaches for support systems in health care, implement computation with natural systems, but also in art and architecture. As a consequence, the field is highly interdisciplinary, which is also nicely reflected in the wide range of authors that are featured in this e-book. We have contributions from robotics, mechanical engineering, health, architecture, biology, philosophy, and others

Complexity, Emergent Systems and Complex Biological Systems:\ud Complex Systems Theory and Biodynamics. [Edited book by I.C. Baianu, with listed contributors (2011)]

An overview is presented of System dynamics, the study of the behaviour of complex systems, Dynamical system in mathematics Dynamic programming in computer science and control theory, Complex systems biology, Neurodynamics and Psychodynamics.\u

Advanced Automation for Space Missions

The feasibility of using machine intelligence, including automation and robotics, in future space missions was studied

Information processing in biology

To survive, organisms must respond appropriately to a variety of challenges posed by a dynamic and uncertain environment. The mechanisms underlying such responses can in general be framed as input-output devices which map environment states (inputs) to associated responses (output. In this light, it is appealing to attempt to model these systems using information theory, a well developed mathematical framework to describe input-output systems. Under the information theoretical perspective, an organism’s behavior is fully characterized by the repertoire of its outputs under different environmental conditions. Due to natural selection, it is reasonable to assume this input-output mapping has been fine tuned in such a way as to maximize the organism’s fitness. If that is the case, it should be possible to abstract away the mechanistic implementation details and obtain the general principles that lead to fitness under a certain environment. These can then be used inferentially to both generate hypotheses about the underlying implementation as well as predict novel responses under external perturbations. In this work I use information theory to address the question of how biological systems generate complex outputs using relatively simple mechanisms in a robust manner. In particular, I will examine how communication and distributed processing can lead to emergent phenomena which allow collective systems to respond in a much richer way than a single organism could

Using MapReduce Streaming for Distributed Life Simulation on the Cloud

Distributed software simulations are indispensable in the study of large-scale life models but often require the use of technically complex lower-level distributed computing frameworks, such as MPI. We propose to overcome the complexity challenge by applying the emerging MapReduce (MR) model to distributed life simulations and by running such simulations on the cloud. Technically, we design optimized MR streaming algorithms for discrete and continuous versions of Conway’s life according to a general MR streaming pattern. We chose life because it is simple enough as a testbed for MR’s applicability to a-life simulations and general enough to make our results applicable to various lattice-based a-life models. We implement and empirically evaluate our algorithms’ performance on Amazon’s Elastic MR cloud. Our experiments demonstrate that a single MR optimization technique called strip partitioning can reduce the execution time of continuous life simulations by 64%. To the best of our knowledge, we are the first to propose and evaluate MR streaming algorithms for lattice-based simulations. Our algorithms can serve as prototypes in the development of novel MR simulation algorithms for large-scale lattice-based a-life models.https://digitalcommons.chapman.edu/scs_books/1014/thumbnail.jp