Particle trapping with functionalized hybrid optical fibers

Understanding processes on sub-micron scales that are obscured from the observer’s naked eye represents a long cherished desire of mankind. Unfortunately, single particle studies are time demanding and suffer from Brownian motion, which thus limits their practicability and range of applications. Optical and electrical trapping, however, both awarded with a Nobel prize, represent two sophisticated and widely applied solutions allowing for controlled access to individual particles via almost the entire room angle. Particle trapping via optical fibers in principle provides a flexible and low-cost photonic platform enabling remotely operable applications within difficult to reach environments, including in situ and in vivo scenarios. The microtechnologically functionalized tip of a hybrid optical fiber (HOF), in particular, which in contrast to conventional optical fibers incorporates additional materials, offers a unique platform for implementing electromagnetic, i.e., optical and electrical, fields that are essentially required for the trapping of particles and unavailable by standard fibers alone. Within the scope of this work, three unique implementations of HOF tip-based particle traps, which in detail rely on integrating a liquid channel, a pure silica section and metallic wires for functionalizing the fibers, are demonstrated, discussed, and compared to state-of-the-art concepts. First, the principles of optical phenomena, the motion of microscopic objects and influences of confinements including different particle trapping mechanisms, as well as required methods for analyzing and characterizing fiber-based particle traps are introduced. Subsequently, three unique concepts, which in detail consist of a dual fiber focus trap, a single meta-fiber trap and a fiber point Paul trap, and effectively represent two optical and one electrical trap, are discussed and compared with respect to current implementations. ..

Deep tissue light-sheet microscopy

Light-sheet fluorescence microscopy, also recognised as selective plane illumination microscopy, or SPIM, has paved a new road towards imaging of entire specimens for long periods of time, in vivo. Nevertheless, as in any other microscopy technique, light-sheet fluorescence microscopy also heavily depends on the scattering and absorption properties of the imaged sample in order to generate 3D datasets with high signal to noise even at larger tissue depths. This thesis focuses on the development and implementation of new strategies and methods which target the minimization of scattering and absorption effects stemming from living specimens. Combined, the three methods provide the ability to perform gentle, high contrast deep tissue imaging and photomanipulation. Additionally, it allows easier handling and fusion of 3D multiview light-sheet images

Laser Pulses

This book discusses aspects of laser pulses generation, characterization, and practical applications. Some new achievements in theory, experiments, and design are demonstrated. The introductive chapter shortly overviews the physical principles of pulsed lasers operation with pulse durations from seconds to yoctoseconds. A theory of mode-locking, based on the optical noise concept, is discussed. With this approximation, all paradoxes of ultrashort laser pulse formation have been explained. The book includes examples of very delicate laser operation in biomedical areas and extremely high power systems used for material processing and water purification. We hope this book will be useful for engineers and managers, for professors and students, and for those who are interested in laser science and technologies

Roadmap on structured light

Structured light refers to the generation and application of custom light fields. As the tools and technology to create and detect structured light have evolved, steadily the applications have begun to emerge. This roadmap touches on the key fields within structured light from the perspective of experts in those areas, providing insight into the current state and the challenges their respective fields face. Collectively the roadmap outlines the venerable nature of structured light research and the exciting prospects for the future that are yet to be realized

Development of swept, confocally-aligned planar excitation (SCAPE) microscopy for high-speed, volumetric imaging of biological tissue

With the wide-spread adoption of exogenous fluorescent indicators – and more recently genetically encoded fluorescent proteins – over the past two decades, there exists a diverse chemical toolkit with which to probe biological systems. Individual cell types and sub-cellular compartments can be targeted in an increasingly wide range of model organisms. However, imaging these samples is often an exercise in balancing the needs of any given experiment against the constraints of the chosen imaging technology. For example, a volume of brain tissue is host to neurons, glia, vascular compartments and red blood cells that all occupy discrete locations in 3D space, but must work together to support healthy organ function. Single-cell activity on the order of milliseconds can trigger downstream processes that unfold over the course of multiple seconds or even minutes. The development of a technique capable of providing depth-resolved, volumetric imaging with scalable spatiotemporal resolution is crucial to developing a proper understanding of such biological systems. Bottlenecks in the throughput of existing technologies stem from a combination of inefficient illumination and volume acquisition strategies, and insufficient sensor read-out speeds. Light sheet microscopy is a promising solution, but individual designs tend to be highly specialized to specific types of samples and do not easily adapt to a wide range of experimental settings. In this thesis, I detail my work in developing swept, confocally-aligned planar excitation (SCAPE) microscopy from a first-generation prototype into a versatile, easy-to-reproduce, easy-to-use system for high-speed, 3D imaging. The first chapter introduces the challenges of designing optical systems capable of high-speed, volumetric imaging. An introduction to design choices faced in the construction of fluorescence microscopes, and current approaches to 3D imaging are discussed. The second chapter describes the progression from the 1st to 2nd generation SCAPE system. Improvements made through ray-tracing models and an enhanced optomechanical design are described, and results from this system in a number of model organisms are presented. The third chapter presents results from a range of biological applications to which SCAPE microscopy has been applied. Work in imaging the zebrafish heart to demonstrate the system’s improved imaging speed, the C. elegans to show the system’s resolution, and finally a number of examples of large field-of-view and high-resolution structural imaging are all described. Finally, the fourth chapter concludes with an overview of the work that lies ahead to both further develop of SCAPE microscopy, as well as to bring the existing system’s strengths to bear in a wider range of environments

Optics and Fluid Dynamics Department annual progress report for 2001

research within three scientific programmes: (1) laser systems and optical materials, (2) optical diagnostics and information processing and (3) plasma and fluid dynamics. The department has core competences in: optical sensors, optical materials, optical storage, biooptics, numerical modelling and information processing, non-linear dynamics and fusion plasma physics. The research is supported by several EU programmes, including EURATOM, by Danish research councils and by industry. A summary of the activities in 2001 is presented. ISBN 87-550-2993-0 (Internet

Novel Approaches for Nondestructive Testing and Evaluation

Nondestructive testing and evaluation (NDT&E) is one of the most important techniques for determining the quality and safety of materials, components, devices, and structures. NDT&E technologies include ultrasonic testing (UT), magnetic particle testing (MT), magnetic flux leakage testing (MFLT), eddy current testing (ECT), radiation testing (RT), penetrant testing (PT), and visual testing (VT), and these are widely used throughout the modern industry. However, some NDT processes, such as those for cleaning specimens and removing paint, cause environmental pollution and must only be considered in limited environments (time, space, and sensor selection). Thus, NDT&E is classified as a typical 3D (dirty, dangerous, and difficult) job. In addition, NDT operators judge the presence of damage based on experience and subjective judgment, so in some cases, a flaw may not be detected during the test. Therefore, to obtain clearer test results, a means for the operator to determine flaws more easily should be provided. In addition, the test results should be organized systemically in order to identify the cause of the abnormality in the test specimen and to identify the progress of the damage quantitatively

Investigation of Multiphase Reactor Hydrodynamics Using Magnetic Resonance Imaging

This thesis presents an investigation on multiphase reactor hydrodynamics using magnetic resonance imaging (MRI). The study demonstrates experimental techniques by which computational and quasi-analytical fluid models may be validated. Three types of industrially-important multiphase reaction vessels are considered: a co-current upflow gas-liquid-solid bed, a co-current downward trickle bed (gas, liquid, solid), and a gas-solid fluidised bed. These reactors were selected as they commonly demonstrate local hydrodynamic anisotropy which affects the global performance of industrial units. MRI was used to obtain 2D velocity images of the gas and liquid phases in the packed beds, and of the gas and the solid phases in the fluidised bed. This study reports the first spatially resolved velocity measurements of both the gas and liquid phases in a co-current upflow bed, and the gas and solid phases of an isolated bubble in a fluidised bed. The experimental vessels were: 52 mm in diameter using 5 mm glass spheres in the upflow bed at 8 bara, 27 mm with 5 mm glass spheres in the trickle bed at 6.75 bara, and 52 mm using 1.2 mm poppy seeds as the fluidised particles at 8.5 bara. The experiments were conducted at a laboratory temperature of 25.0 ± 3.0 °C. In the upflow bed, time-averaged velocity images were acquired over a 2.5 h experimental time. This was done to capture the steady state behaviour of the vessel operating in the pulsing flow regime. The temporally-stable trickle flow state in the trickle bed was imaged over 15-100 minutes. In both packed beds, severe spatial anisotropy in the distribution of flow between pores was revealed. Furthermore, the data were used to determine classical design features such as catalyst wetting and liquid holdup which compared well with literature models. The trickle bed data were further analysed using a morphological algorithm which unambiguously identified the gas-liquid and liquid-solid interfaces. The interfacial flow fields were found to be similar to the bulk flow, with most voxels exhibiting static behaviour. The amount of interaction between the phases was found to be minimal, which is typical of the low interaction regime. A single bubble injection system was employed in the fluidised bed which allowed the injection of isolated bubbles into the incipiently fluidised bed. It also enabled the triggered acquisition of NMR data at precise time intervals. The bubble was found to be an indented ellipsoidal shape, which rose with atypical behaviour which caused it to collapse. Rise velocity was found to be consistent with theory, and the injected bubbles were sufficiently spatially reproducible to acquire 2D velocity images using single-point imaging. These velocity images showed flow behaviour characteristic of a ‘fast’ rising bubble, with a gas recirculation cloud 37 mm in diameter. The particle field was shown to have very high flow in the bubble wake, revealing the mechanism of bubble collapse. The flow data were compared to classical two-phase fluidisation theory, which revealed noteworthy differences in the division of flow between the particulate and bubbling regions.Gates Cambridge Scholarshi