First-Class Functions for First-Order Database Engines

We describe Query Defunctionalization which enables off-the-shelf first-order database engines to process queries over first-class functions. Support for first-class functions is characterized by the ability to treat functions like regular data items that can be constructed at query runtime, passed to or returned from other (higher-order) functions, assigned to variables, and stored in persistent data structures. Query defunctionalization is a non-invasive approach that transforms such function-centric queries into the data-centric operations implemented by common query processors. Experiments with XQuery and PL/SQL database systems demonstrate that first-order database engines can faithfully and efficiently support the expressive "functions as data" paradigm.Comment: Proceedings of the 14th International Symposium on Database Programming Languages (DBPL 2013), August 30, 2013, Riva del Garda, Trento, Ital

Modeling views in the layered view model for XML using UML

In data engineering, view formalisms are used to provide flexibility to users and user applications by allowing them to extract and elaborate data from the stored data sources. Conversely, since the introduction of Extensible Markup Language (XML), it is fast emerging as the dominant standard for storing, describing, and interchanging data among various web and heterogeneous data sources. In combination with XML Schema, XML provides rich facilities for defining and constraining user-defined data semantics and properties, a feature that is unique to XML. In this context, it is interesting to investigate traditional database features, such as view models and view design techniques for XML. However, traditional view formalisms are strongly coupled to the data language and its syntax, thus it proves to be a difficult task to support views in the case of semi-structured data models. Therefore, in this paper we propose a Layered View Model (LVM) for XML with conceptual and schemata extensions. Here our work is three-fold; first we propose an approach to separate the implementation and conceptual aspects of the views that provides a clear separation of concerns, thus, allowing analysis and design of views to be separated from their implementation. Secondly, we define representations to express and construct these views at the conceptual level. Thirdly, we define a view transformation methodology for XML views in the LVM, which carries out automated transformation to a view schema and a view query expression in an appropriate query language. Also, to validate and apply the LVM concepts, methods and transformations developed, we propose a view-driven application development framework with the flexibility to develop web and database applications for XML, at varying levels of abstraction

Continuously Providing Approximate Results under Limited Resources: Load Shedding and Spilling in XML Streams

Because of the high volume and unpredictable arrival rates, stream processing systems may not always be able to keep up with the input data streams, resulting in buffer overflow and uncontrolled loss of data. To continuously supply online results, two alternate solutions to tackle this problem of unpredictable failures of such overloaded systems can be identified. One technique, called load shedding, drops some fractions of data from the input stream to reduce the memory and CPU requirements of the workload. However, dropping some portions of the input data means that the accuracy of the output is reduced since some data is lost. To produce eventually complete results, the second technique, called data spilling, pushes some fractions of data to persistent storage temporarily when the processing speed cannot keep up with the arrival rate. The processing of the disk resident data is then postponed until a later time when system resources become available. This dissertation explores these load reduction technologies in the context of XML stream systems. Load shedding in the specific context of XML streams poses several unique opportunities and challenges. Since XML data is hierarchical, subelements, extracted from different positions of the XML tree structure, may vary in their importance. Further, dropping different subelements may vary in their savings of storage and computation. Hence, unlike prior work in the literature that drops data completely or not at all, in this dissertation we introduce the notion of structure-oriented load shedding, meaning selectively some XML subelements are shed from the possibly complex XML objects in the XML stream. First we develop a preference model that enables users to specify the relative importance of preserving different subelements within the XML result structure. This transforms shedding into the problem of rewriting the user query into shed queries that return approximate answers with their utility as measured by the user preference model. Our optimizer finds the appropriate shed queries to maximize the output utility driven by our structure-based preference model under the limitation of available computation resources. The experimental results demonstrate that our proposed XML-specific shedding solution consistently achieves higher utility results compared to the existing relational shedding techniques. Second, we introduces structure-based spilling, a spilling technique customized for XML streams by considering the spilling of partial substructures of possibly complex XML elements. Several new challenges caused by structure-based spilling are addressed. When a path is spilled, multiple other paths may be affected. We categorize varying types of spilling side effects on the query caused by spilling. How to execute the reduced query to produce the correct runtime output is also studied. Three optimization strategies are developed to select the reduced query that maximizes the output quality. We also examine the clean-up stage to guarantee that an entire result set is eventually generated by producing supplementary results to complement the partial results output earlier. The experimental study demonstrates that our proposed solutions consistently achieve higher quality results compared to the state-of-the-art techniques. Third, we design an integrated framework that combines both shedding and spilling policies into one comprehensive methodology. Decisions on the choice of whether to shed or spill data may be affected by the application needs and data arrival patterns. For some input data, it may be worth to flush it to disk if a delayed output of its result will be important, while other data would best directly dropped from the system given that a delayed delivery of these results would no longer be meaningful to the application. Therefore we need sophisticated technologies capable of deploying both shedding and spilling techniques within one integrated strategy with the ability to deliver the most appropriate decision customers need for each specific circumstance. We propose a novel flexible framework for structure-based shed and spill approaches, applicable in any XML stream system. We propose a solution space that represents all the shed and spill candidates. An age-based quality model is proposed for evaluating the output quality for different reduced query and supplementary query pairs. We also propose a family of four optimization strategies, OptF, OptSmart, HiX and Fex. OptF and OptSmart are both guaranteed to identify an optimal solution of reduced and supplementary query pair, with OptSmart exhibiting significantly less overhead than OptF. HiX and Fex use heuristic-based approaches that are much more efficient than OptF and OptSmart

XML-based approaches for the integration of heterogeneous bio-molecular data

Background: The today's public database infrastructure spans a very large collection of heterogeneous biological data, opening new opportunities for molecular biology, bio-medical and bioinformatics research, but raising also new problems for their integration and computational processing. Results: In this paper we survey the most interesting and novel approaches for the representation, integration and management of different kinds of biological data by exploiting XML and the related recommendations and approaches. Moreover, we present new and interesting cutting edge approaches for the appropriate management of heterogeneous biological data represented through XML. Conclusion: XML has succeeded in the integration of heterogeneous biomolecular information, and has established itself as the syntactic glue for biological data sources. Nevertheless, a large variety of XML-based data formats have been proposed, thus resulting in a difficult effective integration of bioinformatics data schemes. The adoption of a few semantic-rich standard formats is urgent to achieve a seamless integration of the current biological resources. </p

Survey over Existing Query and Transformation Languages

A widely acknowledged obstacle for realizing the vision of the Semantic Web is the inability of many current Semantic Web approaches to cope with data available in such diverging representation formalisms as XML, RDF, or Topic Maps. A common query language is the first step to allow transparent access to data in any of these formats. To further the understanding of the requirements and approaches proposed for query languages in the conventional as well as the Semantic Web, this report surveys a large number of query languages for accessing XML, RDF, or Topic Maps. This is the first systematic survey to consider query languages from all these areas. From the detailed survey of these query languages, a common classification scheme is derived that is useful for understanding and differentiating languages within and among all three areas

Rules for query rewrite in native XML databases

In recent years, the database community has seen many sophisticated Structural Join and Holistic Twig Join algo-rithms as well as several index structures supporting the evaluation of twig query patterns. Even though almost all XML query evaluation proposals in the literature use one of those evaluation methods, we believe that (1) there is no internal representation that enables a smooth transition between the XQuery language level and physical algebra operators, and (2) there is still no approach that consid-ers the combination of content-and-structure indexes, Struc-tural Join, and Holistic Twig Join algorithms to speed up the evaluation of twig queries. To overcome this deficit, we propose an enhancement to Starburst’s Query Graph Model as an internal representation for XML query languages such as XQuery. This representation permits the usage of simple (binary) join operators—such as Structural Joins—and com-plex (n-way) join operators—such as Holistic Twig Joins— as part of the logical algebra. For twig queries, we define a set of rewrite rules which initiate query graph transforma-tions towards improved processability, e. g., to fuse adjacent binary join operators to a complex join operator. To en-hance the evaluation flexibility of twig queries, we come up with further rewrite rules to prepare query graphs—even be-fore query transformation—for making the most of existing joins and indexes. 1