5,880 research outputs found
Lombardi Drawings of Graphs
We introduce the notion of Lombardi graph drawings, named after the American
abstract artist Mark Lombardi. In these drawings, edges are represented as
circular arcs rather than as line segments or polylines, and the vertices have
perfect angular resolution: the edges are equally spaced around each vertex. We
describe algorithms for finding Lombardi drawings of regular graphs, graphs of
bounded degeneracy, and certain families of planar graphs.Comment: Expanded version of paper appearing in the 18th International
Symposium on Graph Drawing (GD 2010). 13 pages, 7 figure
The Galois Complexity of Graph Drawing: Why Numerical Solutions are Ubiquitous for Force-Directed, Spectral, and Circle Packing Drawings
Many well-known graph drawing techniques, including force directed drawings,
spectral graph layouts, multidimensional scaling, and circle packings, have
algebraic formulations. However, practical methods for producing such drawings
ubiquitously use iterative numerical approximations rather than constructing
and then solving algebraic expressions representing their exact solutions. To
explain this phenomenon, we use Galois theory to show that many variants of
these problems have solutions that cannot be expressed by nested radicals or
nested roots of low-degree polynomials. Hence, such solutions cannot be
computed exactly even in extended computational models that include such
operations.Comment: Graph Drawing 201
Computing k-Modal Embeddings of Planar Digraphs
Given a planar digraph G and a positive even integer k, an embedding of G in the plane is k-modal, if every vertex of G is incident to at most k pairs of consecutive edges with opposite orientations, i.e., the incoming and the outgoing edges at each vertex are grouped by the embedding into at most k sets of consecutive edges with the same orientation. In this paper, we study the k-Modality problem, which asks for the existence of a k-modal embedding of a planar digraph. This combinatorial problem is at the very core of a variety of constrained embedding questions for planar digraphs and flat clustered networks.
First, since the 2-Modality problem can be easily solved in linear time, we consider the general k-Modality problem for any value of k>2 and show that the problem is NP-complete for planar digraphs of maximum degree Delta <= k+3. We relate its computational complexity to that of two notions of planarity for flat clustered networks: Planar Intersection-Link and Planar NodeTrix representations. This allows us to answer in the strongest possible way an open question by Di Giacomo [https://doi.org/10.1007/978-3-319-73915-1_37], concerning the complexity of constructing planar NodeTrix representations of flat clustered networks with small clusters, and to address a research question by Angelini et al. [https://doi.org/10.7155/jgaa.00437], concerning intersection-link representations based on geometric objects that determine complex arrangements. On the positive side, we provide a simple FPT algorithm for partial 2-trees of arbitrary degree, whose running time is exponential in k and linear in the input size. Second, motivated by the recently-introduced planar L-drawings of planar digraphs [https://doi.org/10.1007/978-3-319-73915-1_36], which require the computation of a 4-modal embedding, we focus our attention on k=4. On the algorithmic side, we show a complexity dichotomy for the 4-Modality problem with respect to Delta, by providing a linear-time algorithm for planar digraphs with Delta <= 6. This algorithmic result is based on decomposing the input digraph into its blocks via BC-trees and each of these blocks into its triconnected components via SPQR-trees. In particular, we are able to show that the constraints imposed on the embedding by the rigid triconnected components can be tackled by means of a small set of reduction rules and discover that the algorithmic core of the problem lies in special instances of NAESAT, which we prove to be always NAE-satisfiable - a result of independent interest that improves on Porschen et al. [https://doi.org/10.1007/978-3-540-24605-3_14]. Finally, on the combinatorial side, we consider outerplanar digraphs and show that any such a digraph always admits a k-modal embedding with k=4 and that this value of k is best possible for the digraphs in this family
Steinitz Theorems for Orthogonal Polyhedra
We define a simple orthogonal polyhedron to be a three-dimensional polyhedron
with the topology of a sphere in which three mutually-perpendicular edges meet
at each vertex. By analogy to Steinitz's theorem characterizing the graphs of
convex polyhedra, we find graph-theoretic characterizations of three classes of
simple orthogonal polyhedra: corner polyhedra, which can be drawn by isometric
projection in the plane with only one hidden vertex, xyz polyhedra, in which
each axis-parallel line through a vertex contains exactly one other vertex, and
arbitrary simple orthogonal polyhedra. In particular, the graphs of xyz
polyhedra are exactly the bipartite cubic polyhedral graphs, and every
bipartite cubic polyhedral graph with a 4-connected dual graph is the graph of
a corner polyhedron. Based on our characterizations we find efficient
algorithms for constructing orthogonal polyhedra from their graphs.Comment: 48 pages, 31 figure
FlatNJ: A novel network-based approach to visualize evolutionary and biogeographical relationships
Split networks are a type of phylogenetic network that allow visualization of conflict in evolutionary data. We present a new method for constructing such networks called FlatNetJoining (FlatNJ). A key feature of FlatNJ is that it produces networks that can be drawn in the plane in which labels may appear inside of the network. For complex data sets that involve, for example, non-neutral molecular markers, this can allow additional detail to be visualized as compared to previous methods such as split decomposition and NeighborNet. We illustrate the application of FlatNJ by applying it to whole HIV genome sequences, where recombination has taken place, fluorescent proteins in corals, where ancestral sequences are present, and mitochondrial DNA sequences from gall wasps, where biogeographical relationships are of interest. We find that the networks generated by FlatNJ can facilitate the study of genetic variation in the underlying molecular sequence data and, in particular, may help to investigate processes such as intra-locus recombination. FlatNJ has been implemented in Java and is freely available at www.uea.ac.uk/computing/software/flatnj
Label Placement in Road Maps
A road map can be interpreted as a graph embedded in the plane, in which each
vertex corresponds to a road junction and each edge to a particular road
section. We consider the cartographic problem to place non-overlapping road
labels along the edges so that as many road sections as possible are identified
by their name, i.e., covered by a label. We show that this is NP-hard in
general, but the problem can be solved in polynomial time if the road map is an
embedded tree.Comment: extended version of a CIAC 2015 pape
The Partial Visibility Representation Extension Problem
For a graph , a function is called a \emph{bar visibility
representation} of when for each vertex , is a
horizontal line segment (\emph{bar}) and iff there is an
unobstructed, vertical, -wide line of sight between and
. Graphs admitting such representations are well understood (via
simple characterizations) and recognizable in linear time. For a directed graph
, a bar visibility representation of , additionally, puts the bar
strictly below the bar for each directed edge of
. We study a generalization of the recognition problem where a function
defined on a subset of is given and the question is whether
there is a bar visibility representation of with for every . We show that for undirected graphs this problem
together with closely related problems are \NP-complete, but for certain cases
involving directed graphs it is solvable in polynomial time.Comment: Appears in the Proceedings of the 24th International Symposium on
Graph Drawing and Network Visualization (GD 2016
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