Procedural function-based modelling of volumetric microstructures

We propose a new approach to modelling heterogeneous objects containing internal volumetric structures with size of details orders of magnitude smaller than the overall size of the object. The proposed function-based procedural representation provides compact, precise, and arbitrarily parameterised models of coherent microstructures, which can undergo blending, deformations, and other geometric operations, and can be directly rendered and fabricated without generating any auxiliary representations (such as polygonal meshes and voxel arrays). In particular, modelling of regular lattices and cellular microstructures as well as irregular porous media is discussed and illustrated. We also present a method to estimate parameters of the given model by fitting it to microstructure data obtained with magnetic resonance imaging and other measurements of natural and artificial objects. Examples of rendering and digital fabrication of microstructure models are presented

Visual analysis for drum sequence transcription

A system is presented for analysing drum performance video sequences. A novel ellipse detection algorithm is introduced that automatically locates drum tops. This algorithm fits ellipses to edge clusters, and ranks them according to various fitness criteria. A background/foreground segmentation method is then used to extract the silhouette of the drummer and drum sticks. Coupled with a motion intensity feature, this allows for the detection of ‘hits’ in each of the extracted regions. In order to obtain a transcription of the performance, each of these regions is automatically labeled with the corresponding instrument class. A partial audio transcription and color cues are used to measure the compatibility between a region and its label, the Kuhn-Munkres algorithm is then employed to find the optimal labeling. Experimental results demonstrate the ability of visual analysis to enhance the performance of an audio drum transcription system

Simple individual-based models effectively represent Afrotropical forest bird movement in complex landscapes

Reliable estimates of dispersal rates between habitat patches (i.e. functional connectivity) are critical for predicting long-term effects of habitat fragmentation on population persistence. Connectivity measures are frequently derived from least cost path or graph-based approaches, despite the fact that these methods make biologically unrealistic assumptions. Individual-based models (IBMs) have been proposed as an alternative as they allow modelling movement behaviour in response to landscape resistance. However, IBMs typically require excessive data to be useful for management. Here, we test the extent to which an IBM requiring only an uncomplicated set of movement rules [the 'stochastic movement simulator' (SMS)] can predict animal movement behaviour in real-world landscapes. Movement behaviour of two forest birds, the Cabanis's greenbul Phyllastrephus cabanisi (a forest specialist) and the white-starred robin Pogonocichla stellata (a habitat generalist), across an Afrotropical matrix was simulated using SMS. Predictions from SMS were evaluated against a set of detailed movement paths collected by radiotracking homing individuals. SMS was capable of generating credible predictions of bird movement, although simulations were sensitive to the cost values and the movement rules specified. Model performance was generally highest when movement was simulated across low-contrasting cost surfaces and when virtual individuals were assigned low directional persistence and limited perceptual range. SMS better predicted movements of the habitat specialist than the habitat generalist, which highlights its potential to model functional connectivity when species movements are affected by the matrix. Synthesis and applications. Modelling the dispersal process with greater biological realism is likely to be critical for improving our predictive capability regarding functional connectivity and population persistence. For more realistic models to be widely applied, it is vital that their application is not overly complicated or data demanding. Here, we show that given relatively basic understanding of a species' dispersal ecology, the stochastic movement simulator represents a promising tool for estimating connectivity, which can help improve the design of functional ecological networks aimed at successful species conservation

A practical multirobot localization system

We present a fast and precise vision-based software intended for multiple robot localization. The core component of the software is a novel and efficient algorithm for black and white pattern detection. The method is robust to variable lighting conditions, achieves sub-pixel precision and its computational complexity is independent of the processed image size. With off-the-shelf computational equipment and low-cost cameras, the core algorithm is able to process hundreds of images per second while tracking hundreds of objects with a millimeter precision. In addition, we present the method's mathematical model, which allows to estimate the expected localization precision, area of coverage, and processing speed from the camera's intrinsic parameters and hardware's processing capacity. The correctness of the presented model and performance of the algorithm in real-world conditions is verified in several experiments. Apart from the method description, we also make its source code public at \emph{http://purl.org/robotics/whycon}; so, it can be used as an enabling technology for various mobile robotic problems

Research on a modifeied RANSAC and its applications to ellipse detection from a static image and motion detection from active stereo video sequences

制度:新 ; 報告番号:甲3091号 ; 学位の種類:博士(国際情報通信学) ; 授与年月日:2010/2/24 ; 早大学位記番号:新535

Discovering Neuronal Cell Types and Their Gene Expression Profiles Using a Spatial Point Process Mixture Model

Cataloging the neuronal cell types that comprise circuitry of individual brain regions is a major goal of modern neuroscience and the BRAIN initiative. Single-cell RNA sequencing can now be used to measure the gene expression profiles of individual neurons and to categorize neurons based on their gene expression profiles. While the single-cell techniques are extremely powerful and hold great promise, they are currently still labor intensive, have a high cost per cell, and, most importantly, do not provide information on spatial distribution of cell types in specific regions of the brain. We propose a complementary approach that uses computational methods to infer the cell types and their gene expression profiles through analysis of brain-wide single-cell resolution in situ hybridization (ISH) imagery contained in the Allen Brain Atlas (ABA). We measure the spatial distribution of neurons labeled in the ISH image for each gene and model it as a spatial point process mixture, whose mixture weights are given by the cell types which express that gene. By fitting a point process mixture model jointly to the ISH images, we infer both the spatial point process distribution for each cell type and their gene expression profile. We validate our predictions of cell type-specific gene expression profiles using single cell RNA sequencing data, recently published for the mouse somatosensory cortex. Jointly with the gene expression profiles, cell features such as cell size, orientation, intensity and local density level are inferred per cell type