Acceleration of k-Nearest Neighbor and SRAD Algorithms Using Intel FPGA SDK for OpenCL

Field Programmable Gate Arrays (FPGAs) have been widely used for accelerating machine learning algorithms. However, the high design cost and time for implementing FPGA-based accelerators using traditional HDL-based design methodologies has discouraged users from designing FPGA-based accelerators. In recent years, a new CAD tool called Intel FPGA SDK for OpenCL (IFSO) allowed fast and efficient design of FPGA-based hardware accelerators from high level specification such as OpenCL. Even software engineers with basic hardware design knowledge could design FPGA-based accelerators. In this thesis, IFSO has been used to explore acceleration of k-Nearest-Neighbour (kNN) algorithm and Speckle Reducing Anisotropic Diffusion (SRAD) simulation using FPGAs. kNN is a popular algorithm used in machine learning. Bitonic sorting and radix sorting algorithms were used in the kNN algorithm to check if these provide any performance improvements. Acceleration of SRAD simulation was also explored. The experimental results obtained for these algorithms from FPGA-based acceleration were compared with the state of the art CPU implementation. The optimized algorithms were implemented on two different FPGAs (Intel Stratix A7 and Intel Arria 10 GX). Experimental results show that the FPGA-based accelerators provided similar or better execution time (up to 80X) and better power efficiency (75% reduction in power consumption) than traditional platforms such as a workstation based on two Intel Xeon processors E5-2620 Series (each with 6 cores and running at 2.4 GHz)

Doctor of Philosophy

dissertationIn-memory big data applications are growing in popularity, including in-memory versions of the MapReduce framework. The move away from disk-based datasets shifts the performance bottleneck from slow disk accesses to memory bandwidth. MapReduce is a data-parallel application, and is therefore amenable to being executed on as many parallel processors as possible, with each processor requiring high amounts of memory bandwidth. We propose using Near Data Computing (NDC) as a means to develop systems that are optimized for in-memory MapReduce workloads, offering high compute parallelism and even higher memory bandwidth. This dissertation explores three different implementations and styles of NDC to improve MapReduce execution. First, we use 3D-stacked memory+logic devices to process the Map phase on compute elements in close proximity to database splits. Second, we attempt to replicate the performance characteristics of the 3D-stacked NDC using only commodity memory and inexpensive processors to improve performance of both Map and Reduce phases. Finally, we incorporate fixed-function hardware accelerators to improve sorting performance within the Map phase. This dissertation shows that it is possible to improve in-memory MapReduce performance by potentially two orders of magnitude by designing system and memory architectures that are specifically tailored to that end

Experimental Evaluation of SIMD PE-Mask Generation and Hybrid Mode Parallel Computing on Multi- Microprocessor Systems

Experimentation aimed at determining the potential efficiency of multi-microprocessor designs of SIMD machines is reported. The experimentation is based on timing measurements made on the PASM system prototype at Purdue. The application used to measure and evaluate this phenomenon was bitonic sorting, which has feasible solutions in both SIMD and MIMD modes of computation, as well as in at least two hybrids of SlMD and MIMD modes. Bitonic sorting was coded in these four ways and experiments were performed that examine the tradeoffs among all of these modes. Also, a new PE mask generation scheme for multiple of-the-shelf microprocessor based SIMD systems is proposed, and its performance was measured

Low power and high performance heterogeneous computing on FPGAs

L'abstract è presente nell'allegato / the abstract is in the attachmen

New benchmarking methodology and programming model for big data processing

Big data processing is becoming a reality in numerous real-world applications. With the emergence of new data intensive technologies and increasing amounts of data, new computing concepts are needed. The integration of big data producing technologies, such as wireless sensor networks, Internet of Things, and cloud computing, into cyber-physical systems is reducing the available time to find the appropriate solutions. This paper presents one possible solution for the coming exascale big data processing: a data flow computing concept. The performance of data flow systems that are processing big data should not be measured with the measures defined for the prevailing control flow systems. A new benchmarking methodology is proposed, which integrates the performance issues of speed, area, and power needed to execute the task. The computer ranking would look different if the new benchmarking methodologies were used; data flow systems would outperform control flow systems. This statement is backed by the recent results gained from implementations of specialized algorithms and applications in data flow systems. They show considerable factors of speedup, space savings, and power reductions regarding the implementations of the same in control flow computers. In our view, the next step of data flow computing development should be a move from specialized to more general algorithms and applications.Peer ReviewedPostprint (published version

Acceleration by Inline Cache for Memory-Intensive Algorithms on FPGA via High-Level Synthesis

Using FPGA-based acceleration of high-performance computing (HPC) applications to reduce energy and power consumption is becoming an interesting option, thanks to the availability of high-level synthesis (HLS) tools that enable fast design cycles. However, obtaining good performance for memory-intensive algorithms, which often exchange large data arrays with external DRAM, still requires time-consuming optimization and good knowledge of hardware design. This article proposes a new design methodology, based on dedicated application- and data array-specific caches. These caches provide most of the benefits that can be achieved by coding optimized DMA-like transfer strategies by hand into the HPC application code, but require only limited manual tuning (basically the selection of architecture and size), are neutral to target HLS tool and technology (FPGA or ASIC), and do not require changes to application code. We show experimental results obtained on five common memory-intensive algorithms from very diverse domains, namely machine learning, data sorting, and computer vision. We test the cost and performance of our caches against both out-of-the-box code originally optimized for a GPU, and manually optimized implementations specifically targeted for FPGAs via HLS. The implementation using our caches achieved an 8X speedup and 2X energy reduction on average with respect to out-of-the-box models using only simple directive-based optimizations (e.g., pipelining). They also achieved comparable performance with much less design effort when compared with the versions that were manually optimized to achieve efficient memory transfers specifically for an FPGA

Ein flexibles, heterogenes Bildverarbeitungs-Framework für weltraumbasierte, rekonfigurierbare Datenverarbeitungsmodule

Scientific instruments as payload of current space missions are often equipped with high-resolution sensors. Thereby, especially camera-based instruments produce a vast amount of data. To obtain the desired scientific information, this data usually is processed on ground. Due to the high distance of missions within the solar system, the data rate for downlink to the ground station is strictly limited. The volume of scientific relevant data is usually less compared to the obtained raw data. Therefore, processing already has to be carried out on-board the spacecraft. An example of such an instrument is the Polarimetric and Helioseismic Imager (PHI) on-board Solar Orbiter. For acquisition, storage and processing of images, the instrument is equipped with a Data Processing Module (DPM). It makes use of heterogeneous computing based on a dedicated LEON3 processor in combination with two reconfigurable Xilinx Virtex-4 Field-Programmable Gate Arrays (FPGAs). The thesis will provide an overview of the available space-grade processing components (processors and FPGAs) which fulfill the requirements of deepspace missions. It also presents existing processing platforms which are based upon a heterogeneous system combining processors and FPGAs. This also includes the DPM of the PHI instrument, whose architecture will be introduced in detail. As core contribution of this thesis, a framework will be presented which enables high-performance image processing on such hardware-based systems while retaining software-like flexibility. This framework mainly consists of a variety of modules for hardware acceleration which are integrated seamlessly into the data flow of the on-board software. Supplementary, it makes extensive use of the dynamic in-flight reconfigurability of the used Virtex-4 FPGAs. The flexibility of the presented framework is proven by means of multiple examples from within the image processing of the PHI instrument. The framework is analyzed with respect to processing performance as well as power consumption.Wissenschaftliche Instrumente auf aktuellen Raumfahrtmissionen sind oft mit hochauflösenden Sensoren ausgestattet. Insbesondere kamerabasierte Instrumente produzieren dabei eine große Menge an Daten. Diese werden üblicherweise nach dem Empfang auf der Erde weiterverarbeitet, um daraus wissenschaftlich relevante Informationen zu gewinnen. Aufgrund der großen Entfernung von Missionen innerhalb unseres Sonnensystems ist die Datenrate zur Übertragung an die Bodenstation oft sehr begrenzt. Das Volumen der wissenschaftlich relevanten Daten ist meist deutlich kleiner als die aufgenommenen Rohdaten. Daher ist es vorteilhaft, diese bereits an Board der Sonde zu verarbeiten. Ein Beispiel für solch ein Instrument ist der Polarimetric and Helioseismic Imager (PHI) an Bord von Solar Orbiter. Um die Daten aufzunehmen, zu speichern und zu verarbeiten, ist das Instrument mit einem Data Processing Module (DPM) ausgestattet. Dieses nutzt ein heterogenes Rechnersystem aus einem dedizierten LEON3 Prozessor, zusammen mit zwei rekonfigurierbaren Xilinx Virtex-4 Field-Programmable Gate Arrays (FPGAs). Die folgende Arbeit gibt einen Überblick über verfügbare Komponenten zur Datenverarbeitung (Prozessoren und FPGAs), die den Anforderungen von Raumfahrtmissionen gerecht werden, und stellt einige existierende Plattformen vor, die auf einem heterogenen System aus Prozessor und FPGA basieren. Hierzu gehört auch das Data Processing Module des PHI Instrumentes, dessen Architektur im Verlauf dieser Arbeit beschrieben wird. Als Kernelement der Dissertation wird ein Framework vorgestellt, das sowohl eine performante, als auch eine flexible Bilddatenverarbeitung auf einem solchen System ermöglicht. Dieses Framework besteht aus verschiedenen Modulen zur Hardwarebeschleunigung und bindet diese nahtlos in den Datenfluss der On-Board Software ein. Dabei wird außerdem die Möglichkeit genutzt, die eingesetzten Virtex-4 FPGAs dynamisch zur Laufzeit zu rekonfigurieren. Die Flexibilität des vorgestellten Frameworks wird anhand mehrerer Fallbeispiele aus der Bildverarbeitung von PHI dargestellt. Das Framework wird bezüglich der Verarbeitungsgeschwindigkeit und Energieeffizienz analysiert

Data-Driven Programming Abstractions and Optimization for Multi-Core Platforms

Multi-core platforms have spread to all corners of the computing industry, and trends in design and power indicate that the shift to multi-core will become even wider-spread in the future. As the number of cores on a chip rises, the complexity of memory systems and on-chip interconnects increases drastically. The programmer inherits this complexity in the form of new responsibilities for task decomposition, synchronization, and data movement within an application, which hitherto have been concealed by complex processing pipelines or deemed unimportant since tasks were largely executed sequentially. To some extent, the need for explicit parallel programming is inevitable, due to limits in the instruction-level parallelism that can be automatically extracted from a program. However, these challenges create a great opportunity for the development of new programming abstractions which hide the low-level architectural complexity while exposing intuitive high-level mechanisms for expressing parallelism. Many models of parallel programming fall into the category of data-centric models, where the structure of an application depends on the role of data and communication in the relationships between tasks. The utilization of the inter-core communication networks and effective scaling to large data sets are decidedly important in designing efficient implementations of parallel applications. The questions of how many low-level architectural details should be exposed to the programmer, and how much parallelism in an application a programmer should expose to the compiler remain open-ended, with different answers depending on the architecture and the application in question. I propose that the key to unlocking the capabilities of multi-core platforms is the development of abstractions and optimizations which match the patterns of data movement in applications with the inter-core communication capabilities of the platforms. After a comparative analysis that confirms and stresses the importance of finding a good match between the programming abstraction, the application, and the architecture, this dissertation proposes two techniques that showcase the power of leveraging data dependency patterns in parallel performance optimizations. Flexible Filters dynamically balance load in stream programs by creating flexibility in the runtime data flow through the addition of redundant stream filters. This technique combines a static mapping with dynamic flow control to achieve light-weight, distributed and scalable throughput optimization. The properties of stream communication, i.e., FIFO pipes, enable flexible filters by exposing the backpressure dependencies between tasks. Next, I present Huckleberry, a novel recursive programming abstraction developed in order to allow programmers to expose data locality in divide-and-conquer algorithms at a high level of abstraction. Huckleberry automatically converts sequential recursive functions with explicit data partitioning into parallel implementations that can be ported across changes in the underlying architecture including the number of cores and the amount of on-chip memory. I then present a performance model for multi-core applications which provides an efficient means to evaluate the trade-offs between the computational and communication requirements of applications together with the hardware resources of a target multi-core architecture. The model encompasses all data-driven abstractions that can be reduced to a task graph representation and is extensible to performance techniques such as Flexible Filters that alter an application's original task graph. Flexible Filters and Huckleberry address the challenges of parallel programming on multi-core architectures by taking advantage of properties specific to the stream and recursive paradigms, and the performance model creates a unifying framework based on the communication between tasks in parallel applications. Combined, these contributions demonstrate that specialization with respect to communication patterns enhances the ability of parallel programming abstractions and optimizations to harvest the power of multi-core platforms