Spike pattern recognition by supervised classification in low dimensional embedding space

© The Author(s) 2016. This article is published with open access at Springerlink.com under the terms of the Creative Commons Attribution License 4.0, (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted re-use, distribution, and reproduction in any medium, provided the original work is properly cited.Epileptiform discharges in interictal electroencephalography (EEG) form the mainstay of epilepsy diagnosis and localization of seizure onset. Visual analysis is rater-dependent and time consuming, especially for long-term recordings, while computerized methods can provide efficiency in reviewing long EEG recordings. This paper presents a machine learning approach for automated detection of epileptiform discharges (spikes). The proposed method first detects spike patterns by calculating similarity to a coarse shape model of a spike waveform and then refines the results by identifying subtle differences between actual spikes and false detections. Pattern classification is performed using support vector machines in a low dimensional space on which the original waveforms are embedded by locality preserving projections. The automatic detection results are compared to experts’ manual annotations (101 spikes) on a whole-night sleep EEG recording. The high sensitivity (97 %) and the low false positive rate (0.1 min−1), calculated by intra-patient cross-validation, highlight the potential of the method for automated interictal EEG assessment.Peer reviewedFinal Published versio

Influence of deep structures on the EEG and their invasive and non-invasive assessment

Tesis inédita de la Universidad Complutense de Madrid, Facultad de Medicina, Departamento de Fisiología, leída el 22-11-2019El EEG es la prueba diagnóstica de mayor utilidad en el diagnóstico de la epilepsia. Consiste esencialmente en la representación gráfica de los potenciales postsinápticos generados en las neuronas piramidales de la corteza. Los campos eléctricos registrados en la superficie tienen principalmente dos mecanismos de origen: conducción de volumen desde regiones adyacentes y propagación interneuronal sináptica. Las neuronal piramidales se agrupan formando microcircuitos locales siendo estos circuitos los responsables de la generación delos ritmos registrados en el EEG. Uno de los principales retos de la electroencefalografía consiste en descifrar la relación entre la actividad registrada y la actividad subyacente en las redes neuronales. Para encontrar la fuente de dichas actividades, es necesario tener en cuenta complejos mecanismos tanto no lineales como lineales, así como el efecto de la conducción de volumen y la influencia de la morfología y las propiedades eléctricas del cerebro y el cráneo. Además, las regiones cerebrales se encuentran profusamente interconectadas a menudo produciendo una modulación recíproca que añade un mayor grado complejidad...The EEG is the most valuable diagnostic test in epilepsy. In essence, it mainly consists in agraphical representation of the summated postsynaptic potentials generated in the pyramidal neurons from the cortex. The electrical fields can be generated on the scalp by two mechanisms: volume conduction from nearby regions and synaptic inter‐neuronal propagation. Pyramidal cells align conforming local microcircuit configurations which activation lead to the generation of EEG rhythms. One of the main challenges of EEG is to decipher the relation between the recorded EEG activity and the activity in the neuronal networks. To find the source of EEG activity, complex non‐linear and linear mechanisms as well as volume conduction effect and influence of the shape and electrical properties of the brain and skull need to be taken in consideration. In addition, brain regions are profusely interconnected and functionally connected regions often produce mutual modulation that adds additional complexity...Depto. de FisiologíaFac. de MedicinaTRUEunpu

Epilepsy

With the vision of including authors from different parts of the world, different educational backgrounds, and offering open-access to their published work, InTech proudly presents the latest edited book in epilepsy research, Epilepsy: Histological, electroencephalographic, and psychological aspects. Here are twelve interesting and inspiring chapters dealing with basic molecular and cellular mechanisms underlying epileptic seizures, electroencephalographic findings, and neuropsychological, psychological, and psychiatric aspects of epileptic seizures, but non-epileptic as well

Automatic Detection and Classification of Neural Signals in Epilepsy

The success of an epilepsy treatment, such as resective surgery, relies heavily on the accurate identification and localization of the brain regions involved in epilepsy for which patients undergo continuous intracranial electroencephalogram (EEG) monitoring. The prolonged EEG recordings are screened for two main biomarkers of epilepsy: seizures and interictal spikes. Visual screening and quantitation of these two biomarkers in voluminous EEG recordings is highly subjective, labor-intensive, tiresome and expensive. This thesis focuses on developing new techniques to detect and classify these events in the EEG to aid the review of prolonged intracranial EEG recordings. It has been observed in the literature that reliable seizure detection can be made by quantifying the evolution of seizure EEG waveforms. This thesis presents three new computationally simple non-patient-specific (NPS) seizure detection systems that quantify the temporal evolution of seizure EEG. The first method is based on the frequency-weighted-energy, the second method on quantifying the EEG waveform sharpness, while the third method mimics EEG experts. The performance of these new methods is compared with that of three state-of-the-art NPS seizure detection systems. The results show that the proposed systems outperform these state-of-the-art systems. Epilepsy therapies are individualized for numerous reasons, and patient-specific (PS) seizure detection techniques are needed not only in the pre-surgical evaluation of prolonged EEG recordings, but also in the emerging neuro-responsive therapies. This thesis proposes a new model-based PS seizure detection system that requires only the knowledge of a template seizure pattern to derive the seizure model consisting of a set of basis functions necessary to utilize the statistically optimal null filters (SONF) for the detection of the subsequent seizures. The results of the performance evaluation show that the proposed system provides improved results compared to the clinically-used PS system. Quantitative analysis of the second biomarker, interictal spikes, may help in the understanding of epileptogenesis, and to identify new epileptic biomarkers and new therapies. However, such an analysis is still done manually in most of the epilepsy centers. This thesis presents an unsupervised spike sorting system that does not require a priori knowledge of the complete spike data

Data mining of Intracranial Interictal EEG recordings of Epilepsy patients with focal cortical dysplasia.

TCC(graduação) - Universidade Federal de Santa Catarina. Campus Araranguá. Engenharia da Computação.Epilepsy is a group of neurological diseases that affects up to 1% of the world’s population. About a third of the patients diagnosed with epilepsy are considered with difficult treatment (refractory), this group of patients can benefit from a resective surgery, that removes the epileptogenic tissue of the brain. Nowadays, the exams for the delineation of the areas for resection are still imprecise, and one of the techniques for a better definition of these brain areas require electrophysiological examination with invasive intracranial long-term electroencephalography monitoring (iEEG). One of the strategies for determining the epileptogenic zone (EZ) is to analyze the interictal data of patients with favorable outcomes and unfavorable outcomes with respect to the surgery resected areas and determine the statistical significance between them. A detection, analysis, and clustering data mining algorithm was used in order to extract information of 52 patients with focal cortical dysplasia (FCD) epilepsy. The detection algorithm identifies the interictal epileptiform discharges (IEDs) and arranges the detected activities into clusters given the patterns of spreading. For the statistical analysis, a comparison of the clustered data from three different vigilance epochs (sleep, awake and the combination of both) identified the most relevant epoch for identifying the epileptogenic areas and extract additional parameters. The results showed that the combined epoch of awake and sleep showed strong statistical significance in relation to the outcomes, followed by sleep and awake, respectively. Furthermore, given the positive results of the first analysis, an additional data mining was done in order to utilize the algorithm’s outputs to predict the patient’s FCD group, a predictive model was trained and displayed accuracy greater than 80% when tested with non-trained data

A Study of Automatic Detection and Classification of EEG Epileptiform Transients

This Dissertation documents methods for automatic detection and classification of epileptiform transients, which are important clinical issues. There are two main topics: (1) Detection of paroxysmal activities in EEG; and (2) Classification of paroxysmal activities. This machine learning algorithms were trained on expert opinion which was provided as annotations in clinical EEG recordings, which are called \u27yellow boxes\u27 (YBs). The Dissertation describes improved wavelet-based features which are used in machine learning algorithms to detect events in clinical EEG. It also reveals the influence of electrode positions and cardinality of datasets on the outcome. Furthermore, it studies the utility of using fuzzy strategies to obtain better performance than using crisp decision strategies. In the yellow-box detection study, this Dissertation makes use of threshold strategies and implementation of ANNs. It develops two types of features, wavelet and morphology, for comparison. It also explores the possibility to reduce input vector dimension by pruning. A full-scale real-time simulation of YB detection is performed. The simulation results are demonstrated using a web-based EEG viewing system designed in the School of Computing at Clemson, called EEGnet. Results are compared to expert marked YBs

Spatio-temporal evolution of interictal epileptic activity : a study with unaveraged multichannel MEG data in association with MRIs.

This thesis addresses issues relating to MEG modelling, analysis and interpretation of results. A source model employing current density distributions, namely Magnetic Field Tomography (MET), is used to obtain the MEG results. The first issue of concern refers to the registration of MEG data with structural MR images in an attempt to improve the localisation capability of MEG/MET. Simulations testing some spatial and tem poral aspects of the reconstruction capability of MET are also provided. A novel way of conducting MET studies in depth is suggested and implemented: the iterative use of a source space designed to cover deep situated structures on either side of the brain. The main bulk of this thesis is concerned with research into interictal epileptic activity as recorded by means of multichannel MEG system s and analysed using MET. The major aim is to investigate whether or not MET analysis of unaveraged MEG data (single epochs) is feasible in cases of pathophysiological signals and more specifically interictal signals from patients with epilepsy of a complex partial type. The investigation is undertaken against the "traditional" view of the impropriety and absurdity of using single epoch records in the MEG analysis due to noise dominance; we provide evidence that analysis of single, unaveraged epileptic spikes is actually feasible: we demonstrate spatio-temporal coherence in the MET results of the various single interictal events and show that activity extracted from the "averaged event" is made up of activity contributions which occur intermittently and at variable latencies. Our statements are drawn from the study of both superficial and deep activity

Imaging functional and structural networks in the human epileptic brain

Epileptic activity in the brain arises from dysfunctional neuronal networks involving cortical and subcortical grey matter as well as their connections via white matter fibres. Physiological brain networks can be affected by the structural abnormalities causing the epileptic activity, or by the epileptic activity itself. A better knowledge of physiological and pathological brain networks in patients with epilepsy is critical for a better understanding the patterns of seizure generation, propagation and termination as well as the alteration of physiological brain networks by a chronic neurological disorder. Moreover, the identification of pathological and physiological networks in an individual subject is critical for the planning of epilepsy surgery aiming at resection or at least interruption of the epileptic network while sparing physiological networks which have potentially been remodelled by the disease. This work describes the combination of neuroimaging methods to study the functional epileptic networks in the brain, structural connectivity changes of the motor networks in patients with localisation-related or generalised epilepsy and finally structural connectivity of the epileptic network. The combination between EEG source imaging and simultaneous EEG-fMRI recordings allowed to distinguish between regions of onset and propagation of interictal epileptic activity and to better map the epileptic network using the continuous activity of the epileptic source. These results are complemented by the first recordings of simultaneous intracranial EEG and fMRI in human. This whole-brain imaging technique revealed regional as well as distant haemodynamic changes related to very focal epileptic activity. The combination of fMRI and DTI tractography showed subtle changes in the structural connectivity of patients with Juvenile Myoclonic Epilepsy, a form of idiopathic generalised epilepsy. Finally, a combination of intracranial EEG and tractography was used to explore the structural connectivity of epileptic networks. Clinical relevance, methodological issues and future perspectives are discussed