Towards a general monitoring system for terrestrial primary production: a test spanning the European drought of 2018

(1) Land surface models require inputs of temperature and moisture variables to generate predictions of gross primary production (GPP). Differences between leaf and air temperature vary temporally and spatially and may be especially pronounced under conditions of low soil moisture availability. The Sentinel-3 satellite mission offers estimates of the land surface temperature (LST), which for vegetated pixels can be adopted as the canopy temperature. Could remotely sensed estimates of LST offer a parsimonious input to models by combining information on leaf temperature and hydration? (2) Using a light use efficiency model that requires only a handful of input variables, we generated GPP simulations for comparison with eddy-covariance inferred estimates available from flux sites within the Integrated Carbon Observation System. Remotely sensed LST and greenness data were input from Sentinel-3. Gridded air temperature data were obtained from the European Centre for Medium-Range Weather Forecasts. We chose the years 2018–2019 to exploit the natural experiment of a pronounced European drought. (3) Simulated GPP showed good agreement with flux-derived estimates. During dry conditions, simulations forced with LST performed better than those with air temperature for shrubland, grassland and savanna sites. (4) This study advances the prospect for a global GPP monitoring system that will rely primarily on remotely sensed inputs

A review of carbon monitoring in wet carbon systems using remote sensing

Carbon monitoring is critical for the reporting and verification of carbon stocks and change. Remote sensing is a tool increasingly used to estimate the spatial heterogeneity, extent and change of carbon stocks within and across various systems. We designate the use of the term wet carbon system to the interconnected wetlands, ocean, river and streams, lakes and ponds, and permafrost, which are carbon-dense and vital conduits for carbon throughout the terrestrial and aquatic sections of the carbon cycle. We reviewed wet carbon monitoring studies that utilize earth observation to improve our knowledge of data gaps, methods, and future research recommendations. To achieve this, we conducted a systematic review collecting 1622 references and screening them with a combination of text matching and a panel of three experts. The search found 496 references, with an additional 78 references added by experts. Our study found considerable variability of the utilization of remote sensing and global wet carbon monitoring progress across the nine systems analyzed. The review highlighted that remote sensing is routinely used to globally map carbon in mangroves and oceans, whereas seagrass, terrestrial wetlands, tidal marshes, rivers, and permafrost would benefit from more accurate and comprehensive global maps of extent. We identified three critical gaps and twelve recommendations to continue progressing wet carbon systems and increase cross system scientific inquiry

Põhjapoolkera soode põhjaveetaseme seire täiendamine optiliste ja termiliste satelliidiandmete abil

Väitekirja elektrooniline versioon ei sisalda publikatsiooneSood on märgalad, kuhu taimede mittetäieliku lagunemise tõttu on talletunud palju turvast, , mis sisaldab suurt kogust süsinikku. Turvas on moodustunud aastatuhandete jooksul niisketes tingimustes. Inimtegevuse surve ning globaalne kliima soojenemine on põhjustanud soode kuivenemise ning seetõttu talletunud süsiniku lendumist kasvuhoonegaaside (KHG), peamiselt süsihappegaasina (CO2), mis põhjustab omakorda kliima soojenemist. Ka teised KHG-d, metaan ja naerugaas, lenduvad soodest ja nendegi puhul on olulisimaks teguriks põhjaveetaseme langus. Seetõttu on täpsem teadmine soode põhjaveetaseme muutustest olulise tähtsusega Maa kliima muutumise ennustamisel. Käesolev väitekiri annab ülevaate uuringutest, mille välitööde osa tehti Eestis Endla looduskaitsealal Männikjärve ja Linnusaare rabades, võrdlevad analüüsid aga sarnaste soodega Soomes, Rootsis, Kanadas ja USA-s. Töö peamiseks eesmärgiks oli täiendada Põhjapoolkera soode põhjaveetaseme sattelliidi-põhist kaugseiret, mille alusel hinnati tulemuste olulisust, võrreldes seda soodes tehtud kohapealsete mõõtmistega. Esmakordselt näidati, et kasutatud optiliste ja termiliste spektrite signaalid, mis on turba veesisalduse ja rohelise (kasvuperioodi) taimkatte määramise seisukohast kõige tundlikumad, , iseloomustavad usaldusväärselt soode põhjaveetaset. Täiendava uuringuga taimkatte mõjust seosele leiti vastav niiskusindeks ja selle kõige usaldusväärsemad kohad (pikslid) soodes, mis omakorda võimaldas üldistada tulemust kogu soo ulatuses. Algselt Eesti soodes välja töötatud metoodika õigustas ennast ka teistes soodes nii Euroopas kui ka Põhja-Ameerikas ning seda soovitatakse kasutada edasistes uuringutes.Peatlands are a type of wetlands, which have accumulated huge quantities of carbon as a plant matter. The accumulation of this carbon occurred in water-logged conditions and took thousands of years. Global climate change can lead to the drying of peatlands and, thus, the release of accumulated carbon in the form of greenhouse gas – carbon dioxide (CO2). Releasing CO2 into the atmosphere will amplify global climate change. Therefore, knowledge of water table depth in peatlands is essential for predicting future Earth climate. In this thesis, we present results of our four articles integrated together and they share one general aim – to improve the estimation of water table depth in Northern Hemisphere peatlands using remotely sensed information in thermal and optical spectra. We evaluated the usefulness of this information to detect the temporal and spatial changes in water table depth based on in-situ data collected in peatlands. Particularly, we used signals sensitive to moisture and green vegetation, and utilized them in several indices that indicate soil moisture conditions. In this thesis, we have determined, for the first time, that used in our study moisture index based on optical data has a strong temporal relationship with in-situ measured water table depth in peatlands. Moreover, we discussed the impact of vegetation cover on that relationship and suggested a method for selecting the most informative pixels of moisture index. In conclusion, we suggest the future perspectives of using optical-based moisture index together with challenges it might have.https://www.ester.ee/record=b536954

Remote sensing based assessment of land cover and soil moisture in the Kilombero floodplain in Tanzania

Wetlands provide important ecological, biological, and social-economic services that are critical for human existence. The increasing demand for food, arable land shortage and changing climate conditions in East Africa have created a paradigm shift from upland cultivation to wetland use due to their year-round soil water availability. However, there is need to control and manage the activities within the wetlands to ensure sustainable use while negating any negative effects caused by these activities. This is implemented through the decisions made by the land managers within the wetlands. Providing the users of the wetlands with scientific knowledge acts as a support tool for policy-making geared towards the sustainable use of the wetlands. The overall research contains two main components: First, the need for timely land cover maps at a reasonable scale, and secondly, the assessment of soil moisture as a major contributor to agricultural production. The objectives of the study were to generate land cover maps from multi-sensor optical datasets and to assess the performance of single-polarized Sentinel-1 Gray Level Co-occurrence Matrix (GLCM) texture and Principal Component Analysis (PCA) features by applying multiple classification algorithms in a floodplain in the Kilombero catchment. Furthermore, soil moisture spatial-temporal patterns over three hydrological zones was assessed, estimation of soil moisture from radar data and generation of soil moisture products from global products was investigated. The correlation of the merged products to Normalized Difference Vegetation Index (NDVI) measures was also investigated. RapidEye, Sentinel-2 and Landsat images were used in determining the areal extents of four major land cover classes namely vegetated, bare, water and built up. The acquisition period of the images ranges from August 2013 to June 2015 for the RapidEye images, December 2015 to August 2016 for the Sentinel-2 images and 2013 to 2016 Landsat-8 images were included in the land cover time series dynamic study. However, the major challenge arising was cloud coverage and hence Sentinel-1 images were tested in the application of Synthetic Aperture Radar (SAR) in wetland mapping. Variograms were used in spatial-temporal assessment of soil moisture data collected from three hydrological zones, riparian, middle and fringe. A roughness parameter was derived from a semi-empirical model. Soil moisture was retrieved from TerraSAR-X and RadarSAT-2 with the retrieved roughness parameter as an input in a linear regression equation. Triple collocation was applied in error assessment of the global soil moisture products prior to development of a merged product. Cross-correlation was applied in relating NDVI to soil moisture. Optical data (RapidEye, Landsat-8, and Sentinel-2) generated land cover maps used in assessing the land cover dynamics over time. The land cover ratios were related to depth to groundwater. As the depth to groundwater reduced in June the bare land coverage was 45-57% while that of vegetation was 34-47%. In December when the depth to groundwater was highest, bare land coverage was 62-69% while that of the vegetated area was 27-25%. This indicates that depth of groundwater and vegetation coverage responds to seasonality. During the dry season, 68-81% of the total vegetation class is within the riparian zone. In the classification of the SAR images, the overall accuracies for the single polarized VV images ranged from 54-76%, 60-81% and 61-80% for Random Forest (RF), Neural Network (NN) and Support Vector Machine (SVM) respectively. GLCM features had overall accuracies of 64-86%, 65-88% and 65-86% for RF, NN, and SVM respectively. PCA derived images had similar overall accuracies of 68-92% for NN, RF, and SVM respectively. The PCA images had the highest overall accuracy for the entire time series indicating that reduction in the number of texture features to layers containing the maximum variance improves the accuracy. The standard deviation of soil moisture was noted to increase with increasing soil moisture. Soil texture plays a key role in soil moisture retention. The riparian fields had a high water content explained by the high clay and organic matter content. A roughness parameter was derived and utilized in the retrieval of soil moisture from SAR resulting to R2 of 0.88- 0.92 between observed and simulated soil moisture values from co-polarized RadarSAT-2 HH and TerraSAR-X HH and VV. Merged soil moisture product from FEWSNET Land Data Assimilation System_NOAH (FLDAS_NOAH), ECMWF Re-Analysis Interim (ERA-Interim) and Soil Moisture and Ocean Salinity (SMOS) and FLDAS_Variable Infiltration Capacity (VIC), ERA-Interim and SMOS had similar patterns attributed to FLDAS_NOAH and FLDAS_VIC forced by the same precipitation product (RFE). Cross-correlation of Moderate-resolution Imaging Spectrometer (MODIS) NDVI and the merged soil moisture products revealed a 2-month lag of NDVI. Hence, the relationship is useful in determining the Start of Season from soil moisture products. In conclusion, the successful land cover mapping of the study area demonstrated the use of satellite imagery for wetland characterization. The vast coverage and frequent acquisitions of optical and microwave remotely sensed data additionally make the approaches transferable to other locations and allow for mapping at larger scales. Soil moisture assessment from point data revealed varied soil moisture patterns whereas global remotely sensed and modeled products rather provide complementary information about growing conditions, and hence a situational assessment tool of potential of physical availability dimension of food security. This study forms a baseline upon which additional monitoring and assessment of the Kilombero wetland ecosystem can be performed with the current results marked as a reference. Moreover, the study serves as a demonstration case of remote sensing based approaches for land cover and soil moisture mapping, whose results are useful to stakeholders to aid in the implementation of adapted production techniques for yield optimization while minimizing the unsustainable use of the natural resources.Feuchtgebiete erbringen wichtige ökologische, biologische und sozial-ökonomische Dienstleistungen, welche entscheidend für das menschliche Dasein sind. Der steigende Bedarf an Nahrung, der Mangel an landwirtschaftlichen Nutzflächen und die Veränderung der klimatischen Bedingungen in Ostafrika haben zu einem Paradigmenwechsel vom Anbau im Hochland hin zur Nutzung von Feuchtgebieten geführt. Allerdings sind Kontrolle und Management der Aktivitäten in Feuchtgebieten notwendig, um die nachhaltige Nutzung zu sichern und negative Effekte dieser Aktivitäten zu vermeiden. Die Implementierung erfolgt durch die Landverwalter in den Feuchtgebieten. Den Nutzern von Feuchtgebieten wissenschaftliche Erkenntnisse bereitzustellen dient als Hilfsmittel zur politischen Entscheidungsfindung für die nachhaltige Feuchtgebietsnutzung. Die Forschung im Rahmen der Dissertation beinhaltet zwei Hauptkomponenten: erstens den Bedarf an aktuellen Landbedeckungskarten auf einer angemessenen Skalenebene und zweitens die Erfassung der Bodenfeuchte als wichtiger Einflussfaktor auf die landwirtschaftliche Produktion. Das Ziel der Untersuchung war, Landbedeckungskarten auf Grundlage von multisensorischen optischen Daten zu erstellen und die Eignung der Textur der einfach polarisierten Sentinel-1 Grauwertmatrix (GLCM) sowie der einer Hauptkomponentenanalyse (PCA) bei Anwendung unterschiedlicher Klassifikationsalgorithmen zu beurteilen. Des Weiteren wurden raum-zeitliche Bodenfeuchtemuster über drei hydrologische Zonen hinweg modelliert, die Bodenfeuchte aus Radardaten abgeleitet sowie die Erstellung von Bodenfeuchteprodukten auf Basis von globalen Produkten untersucht. Die Korrelation der Bodenfeuchteprodukte mit dem Normalisierten Differenzierten Vegetationsindex (NDVI) wurde ebenfalls analysiert. RapidEye, Sentinel-2 und Landsat Bilder wurden genutzt um die räumliche Ausdehnung der vier Hauptklassen (Vegetation, freiliegender Boden, Wasser und Bebauung) der Landbedeckung zu ermitteln. Für die Zeitreihenanalyse der der Landbedeckungsdynamik wurden RapidEye-Daten von August 2013 bis Juni 2015, Sentinel-2-Bilder von Dezember 2015 bis August 2016 und Landsat-8-Bilder von 2013 bis 2016 verwendet. Die größte Herausforderung war jedoch die Wolkenbedeckung, weshalb die Anwendung von Synthetic Aperture Radar (SAR) für die Feuchtgebietskartierung getestet wurde. Die gemessene Bodenfeuchte wurde mittels Variogrammen für die drei hydrologischen Zonen (Uferzone, Mitte und Randgebiete) raum-zeitlich interpoliert. Ein Rauhigkeitsparameter wurde aus einem semi-empirischen Modell hergeleitet. Die Bodenfeuchte wurde aus TerraSAR-X und RadarSAT-2- Bildern unter Verwendung des Rauhigkeitsparameters als Eingangsgröße in einer linearen Regression abgeleitet. Vor der Zusammenführung der Produkte wurde das globale Bodenfeuchteprodukt mithilfe von dreifacher Kollokation auf Fehler überprüft. Die Kreuzkorrelation zwischen NDVI und Bodenfeuchte wurde berechnet. Optische Daten (RapidEye, Landsat-8 und Sentinel-2) wurden genutzt, um die zeitliche Dynamik der Landbedeckung zu bestimmen. Die Landbedeckungsverhältnisse wurde mit der Höhe des Grundwasserspiegels korreliert. Ein hoher Grundwasserstand im Juni resultierte in 45-57% unbedecktem Boden, während der Anteil der Vegetation 34-47% betrug. Im Dezember, als der Grundwasserspiegel seinen Tiefststand hatte, erhöhte sich der Anteil des freiliegenden Bodens auf 62-69% und der Anteil der Vegetation verringerte sich auf 27-25%. Das zeigt, dass Grundwasserspiegel und Vegetation saisonalen Schwankungen unterworfen sind. Während der Trockenzeit liegen 68-81% der gesamten als Vegetation klassifizierten Fläche innerhalb der Uferzone. In der Klassifikation der SAR-Bilder liegt die Gesamtgenauigkeit der einfach polarisierten VV-Bilder im Rahmen von 54-76%, 60-81% und 61-80%, entsprechend für Random Forest (RF), Neuronale Netze (NN) und Support Vector Machine (SVM). Die GLCM ergab eine Gesamtgenauigkeit von 64-86%, 65-88% und 65-86% für RF, NN und SVM. Die über eine PCA abgeleiteten Bilder erreichten eine ähnliche Genauigkeit von 68-92% für NN, RF und SVM. Die PCA-Bilder weisen die höchste Gesamtgenauigkeit der gesamten Zeitreihe auf, was darauf hinweist, dass eine Reduktion von Textureigenschaften auf Layer der maximalen Varianz enthalten, die Genauigkeit erhöht. Die Standardabweichung der Bodenfeuchte stieg mit zunehmender Bodenfeuchte. Die Bodentextur spielt dabei eine Schlüsselrolle für das Wasserhaltevermögen des Bodens. Die Uferzone wies einen hohen Wassergehalt auf, was durch den hohen Anteil von Ton und Humus zu erklären ist. Die beobachteten und simulierten Bodenfeuchtewerte von co-polarisierten RadarSAT-2 HH, TerraSAR-X HH und VV Daten korrelieren mit einem R2 von 0.88 - 0.92. Die zusammengesetzten globalen Bodenfeuchteprodukte von FLDAS_NOAH, ERA-Interim sowie SMOS und FLDAS_VIC, ERA-Interim und SMOS zeigen ähnliche Muster wie FLDAS_NOAH und FLDAS_VIC, was über die Verwendung desselben Niederschlagsproduktes (RFE) zu erklären ist. Die Kreuzkorrelation von MODIS NDVI und den zusammengeführten Bodenfeuchteprodukten ergab eine zeitliche Verzögerung des NDVI von zwei Monaten. Dieser Zusammenhang kann daher bei der Bestimmung des Saisonbeginns aus Bodenfeuchtigkeitsprodukten nützlich sein. Zusammengefasst hat die Studie gezeigt, wie Satellitenbilder zur Charakterisierung von Wetlands genutzt werden können. Die große Abdeckung und häufige Aufnahme der optischen und Mikrowellen-Fernerkundungsdaten ermöglichen darüber hinaus die Übertragung der Ansätze auf weitere Gebiete und Kartierung auf größeren Skalen. Die Punktmessungen zeigen kleinräumige Muster der Bodenfeuchte, während globale Fernerkundungsprodukte und Modelle Informationen über die Wachstumsbedingungen liefern und somit ein Bewertungsinstrument der Ernährungssicherheit darstellen können. Weiterhin bildet die Studie eine Basis, auf der ein weitergehendes Monitoring und eine Bewertung des Feuchtgebietsökosystems durchgeführt werden kann. Sie ist ein Beispiel für fernerkundungsbasierte Ansätze zur Landbedeckungs- und Bodenfeuchtekartierung; ihre Ergebnisse sind nützlich, um Akteuren bei der Implementierung von Produktionstechniken zu unterstützen, welche die Erträge maximieren und gleichzeitig die nicht nachhaltige Nutzung der natürlichen Ressourcen minimieren

Microwave Indices from Active and Passive Sensors for Remote Sensing Applications

Past research has comprehensively assessed the capabilities of satellite sensors operating at microwave frequencies, both active (SAR, scatterometers) and passive (radiometers), for the remote sensing of Earth’s surface. Besides brightness temperature and backscattering coefficient, microwave indices, defined as a combination of data collected at different frequencies and polarizations, revealed a good sensitivity to hydrological cycle parameters such as surface soil moisture, vegetation water content, and snow depth and its water equivalent. The differences between microwave backscattering and emission at more frequencies and polarizations have been well established in relation to these parameters, enabling operational retrieval algorithms based on microwave indices to be developed. This Special Issue aims at providing an overview of microwave signal capabilities in estimating the main land parameters of the hydrological cycle, e.g., soil moisture, vegetation water content, and snow water equivalent, on both local and global scales, with a particular focus on the applications of microwave indices

Broad-Scale Patterns in CDOM and Total Organic Matter Concentrations of Inland Waters – Insights from Remote Sensing and GIS

The rise in CDOM (coloured dissloved organic matter) is likely to be relatively more pronounced in remote northern regions. However, there is a lack of monitoring to confirm this. For this reason, there is a strong incentive to develop remote sensing-based methods to map CDOM in lakes across broader geographical scales and to include geograghic contex in such analysis. There is a lack of understanding of the mechanisms behind changes in water colour (i.e. CDOM) at large scales. The CDOM variations could be due to varying drivers, such as climate and landscape patterns or catchment features. This means that currently, we do not know the extent to which aquatic ecosystems need conservation efforts, such as management of the surrounding vegetation, to prevent CDOM leakage. Thus, there is need to better understand the drivers behind CDOM changes in inland waters.Over the last few decades, remote sensing technologies and methods have developed dramatically for terrestrial ecosystems. Coupled with the broader availability of remote sensing data, free access to different data sources and the increased resolution of satellite platforms, remote sensing technology now has a significant impact on land monitoring. Due to the increasing demand for high-quality remote sensing data, the technology continues to improve, which makes remote sensing critical for reducing time and funding costs. Similar to these advances in terrestrial remote sensing, there is an increasing potential to provide information about inland waters by using remote sensing. For instance, recent advancements in designing remote sensors, such as the Landsat 8 operational land imager (OLI) and Sentinel-2 multispectral instrument (MSI), have solved past radiometric sensitivity issues and provide high spatial resolution. This thesis explored CDOM patterns on spatial and temporal scales. The overall aim was to investigate the capabilities of remote sensing (RS) and geographic information systems (GIS) to extend CDOM patterns from a regional to a broad scale. Different study sites in Europe, mainly Northern Scandinavia, including large numbers of lakes and rivers, were tested on different scales.The results shows how climate changes (from wet to dry) can result in a combination of changes in hydrology, vegetation type and productivity, which can lead to intra-annual variations in the CDOM of recipient waters. It is also shown that drought can temporarily decrease values of CDOM in boreal lakes. In addition, it is demonstrated that combining remote sensing and GIS tools is an effective way to reveal the impact of different catchment parameters and morphometry on lake CDOM concentration. Moreover, the thesis shows that utlizing long-term remote sensing records of CDOM from the last few decades is a successful approach to fill the gaps of the missing lake data from in situ assessments. Finally, the results helped to explore links between water browning and the organic matter degradation rates in temperate European rivers at a continental scale. In conclusion, this thesis demonstrates the pogential use of remote sensing for mapping CDOM in a wide range of inland waters that are situated in complex, inaccessible regions that are not well- monitored

Amazon hydrology from space : scientific advances and future challenges

As the largest river basin on Earth, the Amazon is of major importance to the world's climate and water resources. Over the past decades, advances in satellite-based remote sensing (RS) have brought our understanding of its terrestrial water cycle and the associated hydrological processes to a new era. Here, we review major studies and the various techniques using satellite RS in the Amazon. We show how RS played a major role in supporting new research and key findings regarding the Amazon water cycle, and how the region became a laboratory for groundbreaking investigations of new satellite retrievals and analyses. At the basin-scale, the understanding of several hydrological processes was only possible with the advent of RS observations, such as the characterization of "rainfall hotspots" in the Andes-Amazon transition, evapotranspiration rates, and variations of surface waters and groundwater storage. These results strongly contribute to the recent advances of hydrological models and to our new understanding of the Amazon water budget and aquatic environments. In the context of upcoming hydrology-oriented satellite missions, which will offer the opportunity for new synergies and new observations with finer space-time resolution, this review aims to guide future research agenda toward integrated monitoring and understanding of the Amazon water from space. Integrated multidisciplinary studies, fostered by international collaborations, set up future directions to tackle the great challenges the Amazon is currently facing, from climate change to increased anthropogenic pressure

TerraSAR-X and Wetlands: A Review

Since its launch in 2007, TerraSAR-X observations have been widely used in a broad range of scientific applications. Particularly in wetland research, TerraSAR-X\u27s shortwave X-band synthetic aperture radar (SAR) possesses unique capabilities, such as high spatial and temporal resolution, for delineating and characterizing the inherent spatially and temporally complex and heterogeneous structure of wetland ecosystems and their dynamics. As transitional areas, wetlands comprise characteristics of both terrestrial and aquatic features, forming a large diversity of wetland types. This study reviews all published articles incorporating TerraSAR-X information into wetland research to provide a comprehensive study of how this sensor has been used with regard to polarization, and the function of the data, time-series analyses, or the assessment of specific wetland ecosystem types. What is evident throughout this literature review is the synergistic fusion of multi-frequency and multi-polarization SAR sensors, sometimes optical sensors, in almost all investigated studies to attain improved wetland classification results. Due to the short revisiting time of the TerraSAR-X sensor, it is possible to compute dense SAR time-series, allowing for a more precise observation of the seasonality in dynamic wetland areas as demonstrated in many of the reviewed studies