8,912 research outputs found
A fast immersed boundary method for external incompressible viscous flows using lattice Green's functions
A new parallel, computationally efficient immersed boundary method for
solving three-dimensional, viscous, incompressible flows on unbounded domains
is presented. Immersed surfaces with prescribed motions are generated using the
interpolation and regularization operators obtained from the discrete delta
function approach of the original (Peskin's) immersed boundary method. Unlike
Peskin's method, boundary forces are regarded as Lagrange multipliers that are
used to satisfy the no-slip condition. The incompressible Navier-Stokes
equations are discretized on an unbounded staggered Cartesian grid and are
solved in a finite number of operations using lattice Green's function
techniques. These techniques are used to automatically enforce the natural
free-space boundary conditions and to implement a novel block-wise adaptive
grid that significantly reduces the run-time cost of solutions by limiting
operations to grid cells in the immediate vicinity and near-wake region of the
immersed surface. These techniques also enable the construction of practical
discrete viscous integrating factors that are used in combination with
specialized half-explicit Runge-Kutta schemes to accurately and efficiently
solve the differential algebraic equations describing the discrete momentum
equation, incompressibility constraint, and no-slip constraint. Linear systems
of equations resulting from the time integration scheme are efficiently solved
using an approximation-free nested projection technique. The algebraic
properties of the discrete operators are used to reduce projection steps to
simple discrete elliptic problems, e.g. discrete Poisson problems, that are
compatible with recent parallel fast multipole methods for difference
equations. Numerical experiments on low-aspect-ratio flat plates and spheres at
Reynolds numbers up to 3,700 are used to verify the accuracy and physical
fidelity of the formulation.Comment: 32 pages, 9 figures; preprint submitted to Journal of Computational
Physic
Hybrid finite difference/finite element immersed boundary method
The immersed boundary method is an approach to fluid-structure interaction that uses a Lagrangian
description of the structural deformations, stresses, and forces along with an Eulerian description of the
momentum, viscosity, and incompressibility of the fluid-structure system. The original immersed boundary
methods described immersed elastic structures using systems of flexible fibers, and even now, most
immersed boundary methods still require Lagrangian meshes that are finer than the Eulerian grid. This
work introduces a coupling scheme for the immersed boundary method to link the Lagrangian and Eulerian
variables that facilitates independent spatial discretizations for the structure and background grid. This
approach employs a finite element discretization of the structure while retaining a finite difference scheme
for the Eulerian variables. We apply this method to benchmark problems involving elastic, rigid, and actively
contracting structures, including an idealized model of the left ventricle of the heart. Our tests include cases
in which, for a fixed Eulerian grid spacing, coarser Lagrangian structural meshes yield discretization errors
that are as much as several orders of magnitude smaller than errors obtained using finer structural meshes.
The Lagrangian-Eulerian coupling approach developed in this work enables the effective use of these coarse
structural meshes with the immersed boundary method. This work also contrasts two different weak forms
of the equations, one of which is demonstrated to be more effective for the coarse structural discretizations
facilitated by our coupling approach
An efficient parallel immersed boundary algorithm using a pseudo-compressible fluid solver
We propose an efficient algorithm for the immersed boundary method on
distributed-memory architectures, with the computational complexity of a
completely explicit method and excellent parallel scaling. The algorithm
utilizes the pseudo-compressibility method recently proposed by Guermond and
Minev [Comptes Rendus Mathematique, 348:581-585, 2010] that uses a directional
splitting strategy to discretize the incompressible Navier-Stokes equations,
thereby reducing the linear systems to a series of one-dimensional tridiagonal
systems. We perform numerical simulations of several fluid-structure
interaction problems in two and three dimensions and study the accuracy and
convergence rates of the proposed algorithm. For these problems, we compare the
proposed algorithm against other second-order projection-based fluid solvers.
Lastly, the strong and weak scaling properties of the proposed algorithm are
investigated
A Moving Boundary Flux Stabilization Method for Cartesian Cut-Cell Grids using Directional Operator Splitting
An explicit moving boundary method for the numerical solution of
time-dependent hyperbolic conservation laws on grids produced by the
intersection of complex geometries with a regular Cartesian grid is presented.
As it employs directional operator splitting, implementation of the scheme is
rather straightforward. Extending the method for static walls from Klein et
al., Phil. Trans. Roy. Soc., A367, no. 1907, 4559-4575 (2009), the scheme
calculates fluxes needed for a conservative update of the near-wall cut-cells
as linear combinations of standard fluxes from a one-dimensional extended
stencil. Here the standard fluxes are those obtained without regard to the
small sub-cell problem, and the linear combination weights involve detailed
information regarding the cut-cell geometry. This linear combination of
standard fluxes stabilizes the updates such that the time-step yielding
marginal stability for arbitrarily small cut-cells is of the same order as that
for regular cells. Moreover, it renders the approach compatible with a wide
range of existing numerical flux-approximation methods. The scheme is extended
here to time dependent rigid boundaries by reformulating the linear combination
weights of the stabilizing flux stencil to account for the time dependence of
cut-cell volume and interface area fractions. The two-dimensional tests
discussed include advection in a channel oriented at an oblique angle to the
Cartesian computational mesh, cylinders with circular and triangular
cross-section passing through a stationary shock wave, a piston moving through
an open-ended shock tube, and the flow around an oscillating NACA 0012 aerofoil
profile.Comment: 30 pages, 27 figures, 3 table
Quasi-static imaged-based immersed boundary-finite element model of human left ventricle in diastole
SUMMARY:
Finite stress and strain analyses of the heart provide insight into the biomechanics of myocardial function and dysfunction. Herein, we describe progress toward dynamic patient-specific models of the left ventricle using an immersed boundary (IB) method with a finite element (FE) structural mechanics model. We use a structure-based hyperelastic strain-energy function to describe the passive mechanics of the ventricular myocardium, a realistic anatomical geometry reconstructed from clinical magnetic resonance images of a healthy human heart, and a rule-based fiber architecture. Numerical predictions of this IB/FE model are compared with results obtained by a commercial FE solver. We demonstrate that the IB/FE model yields results that are in good agreement with those of the conventional FE model under diastolic loading conditions, and the predictions of the LV model using either numerical method are shown to be consistent with previous computational and experimental data. These results are among the first to analyze the stress and strain predictions of IB models of ventricular mechanics, and they serve both to verify the IB/FE simulation framework and to validate the IB/FE model. Moreover, this work represents an important step toward using such models for fully dynamic fluid–structure interaction simulations of the heart
Inertial Coupling Method for particles in an incompressible fluctuating fluid
We develop an inertial coupling method for modeling the dynamics of
point-like 'blob' particles immersed in an incompressible fluid, generalizing
previous work for compressible fluids. The coupling consistently includes
excess (positive or negative) inertia of the particles relative to the
displaced fluid, and accounts for thermal fluctuations in the fluid momentum
equation. The coupling between the fluid and the blob is based on a no-slip
constraint equating the particle velocity with the local average of the fluid
velocity, and conserves momentum and energy. We demonstrate that the
formulation obeys a fluctuation-dissipation balance, owing to the
non-dissipative nature of the no-slip coupling. We develop a spatio-temporal
discretization that preserves, as best as possible, these properties of the
continuum formulation. In the spatial discretization, the local averaging and
spreading operations are accomplished using compact kernels commonly used in
immersed boundary methods. We find that the special properties of these kernels
make the discrete blob a particle with surprisingly physically-consistent
volume, mass, and hydrodynamic properties. We develop a second-order
semi-implicit temporal integrator that maintains discrete
fluctuation-dissipation balance, and is not limited in stability by viscosity.
Furthermore, the temporal scheme requires only constant-coefficient Poisson and
Helmholtz linear solvers, enabling a very efficient and simple FFT-based
implementation on GPUs. We numerically investigate the performance of the
method on several standard test problems...Comment: Contains a number of corrections and an additional Figure 7 (and
associated discussion) relative to published versio
Immersed boundary-finite element model of fluid-structure interaction in the aortic root
It has long been recognized that aortic root elasticity helps to ensure
efficient aortic valve closure, but our understanding of the functional
importance of the elasticity and geometry of the aortic root continues to
evolve as increasingly detailed in vivo imaging data become available. Herein,
we describe fluid-structure interaction models of the aortic root, including
the aortic valve leaflets, the sinuses of Valsalva, the aortic annulus, and the
sinotubular junction, that employ a version of Peskin's immersed boundary (IB)
method with a finite element (FE) description of the structural elasticity. We
develop both an idealized model of the root with three-fold symmetry of the
aortic sinuses and valve leaflets, and a more realistic model that accounts for
the differences in the sizes of the left, right, and noncoronary sinuses and
corresponding valve cusps. As in earlier work, we use fiber-based models of the
valve leaflets, but this study extends earlier IB models of the aortic root by
employing incompressible hyperelastic models of the mechanics of the sinuses
and ascending aorta using a constitutive law fit to experimental data from
human aortic root tissue. In vivo pressure loading is accounted for by a
backwards displacement method that determines the unloaded configurations of
the root models. Our models yield realistic cardiac output at physiological
pressures, with low transvalvular pressure differences during forward flow,
minimal regurgitation during valve closure, and realistic pressure loads when
the valve is closed during diastole. Further, results from high-resolution
computations demonstrate that IB models of the aortic valve are able to produce
essentially grid-converged dynamics at practical grid spacings for the
high-Reynolds number flows of the aortic root
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