The Contour Extraction of Cup in Fundus Images for Glaucoma Detection

Glaucoma is the second leading cause of blindness in the world; therefore the detection of glaucoma is required. The detection of glaucoma is used to distinguish whether a patient's eye is normal or glaucoma. An expert observed the structure of the retina using fundus image to detect glaucoma. In this research, we propose feature extraction method based on cup area contour using fundus images to detect glaucoma. Our proposed method has been evaluated on 44 fundus images consisting of 23 normal and 21 glaucoma. The data is divided into two parts: firstly, used to the learning phase and secondly, used to the testing phase. In order to identify the fundus images including the class of normal or glaucoma, we applied Support Vector Machines (SVM) method. The performance of our method achieves the accuracy of 94.44%

Macular Optical Coherence Tomography Imaging in Glaucoma

The advent of spectral-domain optical coherence tomography has played a transformative role in posterior segment imaging of the eye. Traditionally, images of the optic nerve head and the peripapillary area have been used to evaluate the structural changes associated with glaucoma. Recently, there is growing evidence in the literature supporting the use of macular spectral-domain optical coherence tomography as a complementary tool for clinical evaluation and research purposes in glaucoma

Artificial Intelligence Algorithms to Diagnose Glaucoma and Detect Glaucoma Progression: Translation to Clinical Practice

Purpose: This concise review aims to explore the potential for the clinical implementation of artificial intelligence (AI) strategies for detecting glaucoma and monitoring glaucoma progression. / Methods: Nonsystematic literature review using the search combinations "Artificial Intelligence," "Deep Learning," "Machine Learning," "Neural Networks," "Bayesian Networks," "Glaucoma Diagnosis," and "Glaucoma Progression." Information on sensitivity and specificity regarding glaucoma diagnosis and progression analysis as well as methodological details were extracted. / Results: Numerous AI strategies provide promising levels of specificity and sensitivity for structural (e.g. optical coherence tomography [OCT] imaging, fundus photography) and functional (visual field [VF] testing) test modalities used for the detection of glaucoma. Area under receiver operating curve (AROC) values of > 0.90 were achieved with every modality. Combining structural and functional inputs has been shown to even more improve the diagnostic ability. Regarding glaucoma progression, AI strategies can detect progression earlier than conventional methods or potentially from one single VF test. / Conclusions: AI algorithms applied to fundus photographs for screening purposes may provide good results using a simple and widely accessible test. However, for patients who are likely to have glaucoma more sophisticated methods should be used including data from OCT and perimetry. Outputs may serve as an adjunct to assist clinical decision making, whereas also enhancing the efficiency, productivity, and quality of the delivery of glaucoma care. Patients with diagnosed glaucoma may benefit from future algorithms to evaluate their risk of progression. Challenges are yet to be overcome, including the external validity of AI strategies, a move from a "black box" toward "explainable AI," and likely regulatory hurdles. However, it is clear that AI can enhance the role of specialist clinicians and will inevitably shape the future of the delivery of glaucoma care to the next generation. / Translational Relevance: The promising levels of diagnostic accuracy reported by AI strategies across the modalities used in clinical practice for glaucoma detection can pave the way for the development of reliable models appropriate for their translation into clinical practice. Future incorporation of AI into healthcare models may help address the current limitations of access and timely management of patients with glaucoma across the world

Knowledge Mining In The Clinical Assessment Of Glaucoma

Glaucoma is a leading cause of irreversible blindness and visual impairment. In the clinic, glaucomatous damage can be characterized by structural changes in the optic nerve head (ONH) and retinal nerve fibre layer (RNFL) that can be evaluated by various retinal-imaging techniques such as scanning laser polarimetry and optical coherence tomography (OCT). The structural damage can lead to functional damage in the visual field (VF), normally assessed with standard automated perimetry, which assesses the differential light sensitivity in the field of view. The clinical measurements of retinal structure and visual function play an important role in the detection and management of glaucoma, but the data generated is often complex and highly variable, thus making it hard to clinically interpret. The purpose of this thesis was to investigate knowledge mining procedures for extracting clinically useful information from these measurements. Knowledge mining describes iterative divide-and-conquer type analyses of large-scale questions: solutions to individual smaller problems are used to generate better quality knowledge, which in the case of work reported in this thesis can be translated into clinically useful analysis tools. This thesis describes five knowledge mining procedures specifically developed and applied to structural and functional measurements in glaucoma: (1) probabilistic inference to aid image acquisition of OCT images; (2) a robust and efficient segmentation algorithm to extract features of retina tissue layer structures in large-scale 3-dimensional image volumes acquired by OCT; (3) a predictive structure-function relationship model to bridge the retinal structure and visual function measurements in glaucoma; (4) quantification and visualization of structure-function discordance using the model about structure-function relationship; (5) integration of structural and functional measurements to improve the reproducibility of the measurements. In conclusion the knowledge mining approaches improved the acquisition and/or accuracy of the measurements and provide new clinical analysis tools to detect and manage glaucoma

Retinal vessel segmentation using textons

Segmenting vessels from retinal images, like segmentation in many other medical image domains, is a challenging task, as there is no unified way that can be adopted to extract the vessels accurately. However, it is the most critical stage in automatic assessment of various forms of diseases (e.g. Glaucoma, Age-related macular degeneration, diabetic retinopathy and cardiovascular diseases etc.). Our research aims to investigate retinal image segmentation approaches based on textons as they provide a compact description of texture that can be learnt from a training set. This thesis presents a brief review of those diseases and also includes their current situations, future trends and techniques used for their automatic diagnosis in routine clinical applications. The importance of retinal vessel segmentation is particularly emphasized in such applications. An extensive review of previous work on retinal vessel segmentation and salient texture analysis methods is presented. Five automatic retinal vessel segmentation methods are proposed in this thesis. The first method focuses on addressing the problem of removing pathological anomalies (Drusen, exudates) for retinal vessel segmentation, which have been identified by other researchers as a problem and a common source of error. The results show that the modified method shows some improvement compared to a previously published method. The second novel supervised segmentation method employs textons. We propose a new filter bank (MR11) that includes bar detectors for vascular feature extraction and other kernels to detect edges and photometric variations in the image. The k-means clustering algorithm is adopted for texton generation based on the vessel and non-vessel elements which are identified by ground truth. The third improved supervised method is developed based on the second one, in which textons are generated by k-means clustering and texton maps representing vessels are derived by back projecting pixel clusters onto hand labelled ground truth. A further step is implemented to ensure that the best combinations of textons are represented in the map and subsequently used to identify vessels in the test set. The experimental results on two benchmark datasets show that our proposed method performs well compared to other published work and the results of human experts. A further test of our system on an independent set of optical fundus images verified its consistent performance. The statistical analysis on experimental results also reveals that it is possible to train unified textons for retinal vessel segmentation. In the fourth method a novel scheme using Gabor filter bank for vessel feature extraction is proposed. The ii method is inspired by the human visual system. Machine learning is used to optimize the Gabor filter parameters. The experimental results demonstrate that our method significantly enhances the true positive rate while maintaining a level of specificity that is comparable with other approaches. Finally, we proposed a new unsupervised texton based retinal vessel segmentation method using derivative of SIFT and multi-scale Gabor filers. The lack of sufficient quantities of hand labelled ground truth and the high level of variability in ground truth labels amongst experts provides the motivation for this approach. The evaluation results reveal that our unsupervised segmentation method is comparable with the best other supervised methods and other best state of the art methods

Machine learning strategies for diagnostic imaging support on histopathology and optical coherence tomography

Tesis por compendio[ES] Esta tesis presenta soluciones de vanguardia basadas en algoritmos de computer vision (CV) y machine learning (ML) para ayudar a los expertos en el diagnóstico clínico. Se centra en dos áreas relevantes en el campo de la imagen médica: la patología digital y la oftalmología. Este trabajo propone diferentes paradigmas de machine learning y deep learning para abordar diversos escenarios de supervisión en el estudio del cáncer de próstata, el cáncer de vejiga y el glaucoma. En particular, se consideran métodos supervisados convencionales para segmentar y clasificar estructuras específicas de la próstata en imágenes histológicas digitalizadas. Para el reconocimiento de patrones específicos de la vejiga, se llevan a cabo enfoques totalmente no supervisados basados en técnicas de deep-clustering. Con respecto a la detección del glaucoma, se aplican algoritmos de memoria a corto plazo (LSTMs) que permiten llevar a cabo un aprendizaje recurrente a partir de volúmenes de tomografía por coherencia óptica en el dominio espectral (SD-OCT). Finalmente, se propone el uso de redes neuronales prototípicas (PNN) en un marco de few-shot learning para determinar el nivel de gravedad del glaucoma a partir de imágenes OCT circumpapilares. Los métodos de inteligencia artificial (IA) que se detallan en esta tesis proporcionan una valiosa herramienta de ayuda al diagnóstico por imagen, ya sea para el diagnóstico histológico del cáncer de próstata y vejiga o para la evaluación del glaucoma a partir de datos de OCT.[CA] Aquesta tesi presenta solucions d'avantguarda basades en algorismes de *computer *vision (CV) i *machine *learning (ML) per a ajudar als experts en el diagnòstic clínic. Se centra en dues àrees rellevants en el camp de la imatge mèdica: la patologia digital i l'oftalmologia. Aquest treball proposa diferents paradigmes de *machine *learning i *deep *learning per a abordar diversos escenaris de supervisió en l'estudi del càncer de pròstata, el càncer de bufeta i el glaucoma. En particular, es consideren mètodes supervisats convencionals per a segmentar i classificar estructures específiques de la pròstata en imatges histològiques digitalitzades. Per al reconeixement de patrons específics de la bufeta, es duen a terme enfocaments totalment no supervisats basats en tècniques de *deep-*clustering. Respecte a la detecció del glaucoma, s'apliquen algorismes de memòria a curt termini (*LSTMs) que permeten dur a terme un aprenentatge recurrent a partir de volums de tomografia per coherència òptica en el domini espectral (SD-*OCT). Finalment, es proposa l'ús de xarxes neuronals *prototípicas (*PNN) en un marc de *few-*shot *learning per a determinar el nivell de gravetat del glaucoma a partir d'imatges *OCT *circumpapilares. Els mètodes d'intel·ligència artificial (*IA) que es detallen en aquesta tesi proporcionen una valuosa eina d'ajuda al diagnòstic per imatge, ja siga per al diagnòstic histològic del càncer de pròstata i bufeta o per a l'avaluació del glaucoma a partir de dades d'OCT.[EN] This thesis presents cutting-edge solutions based on computer vision (CV) and machine learning (ML) algorithms to assist experts in clinical diagnosis. It focuses on two relevant areas at the forefront of medical imaging: digital pathology and ophthalmology. This work proposes different machine learning and deep learning paradigms to address various supervisory scenarios in the study of prostate cancer, bladder cancer and glaucoma. In particular, conventional supervised methods are considered for segmenting and classifying prostate-specific structures in digitised histological images. For bladder-specific pattern recognition, fully unsupervised approaches based on deep-clustering techniques are carried out. Regarding glaucoma detection, long-short term memory algorithms (LSTMs) are applied to perform recurrent learning from spectral-domain optical coherence tomography (SD-OCT) volumes. Finally, the use of prototypical neural networks (PNNs) in a few-shot learning framework is proposed to determine the severity level of glaucoma from circumpapillary OCT images. The artificial intelligence (AI) methods detailed in this thesis provide a valuable tool to aid diagnostic imaging, whether for the histological diagnosis of prostate and bladder cancer or glaucoma assessment from OCT data.García Pardo, JG. (2022). Machine learning strategies for diagnostic imaging support on histopathology and optical coherence tomography [Tesis doctoral]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/182400Compendi

Probabilistic Graphical Models for Medical Image Segmentation

Image segmentation constitutes one of the elementary tasks in computer vision. Various variations exists, one of them being the segmentation of layers that entail a natural ordering constraint. One instance of that problem class are the cell layers in the human retina. In this thesis we study a segmentation approach for this problem class, that applies the machinery of probabilistic graphical models. Linked to probabilistic graphical models is the task of inference, that is, given an input scan of the retina, how to obtain an individual prediction or, if possible, a distribution over potential segmentations of that scan. In general, exact inference is unfeasible which is why we study an approximative approach based on variational inference, that allows to efficiently approximate the full posterior distribution. A distinguishing feature of our approach is the incorporation of a prior shape model, which is not restricted to local information. We evaluate our approach for different data sets, including pathological scans, and demonstrate how global shape information yields state-of-the-art segmentation results. Moreover, since we approximatively infer the full posterior distribution, we are able to assess the quality of our prediction as well as rate the scan in terms of its abnormality. Motivated by our problem we also investigate non-parametric density estimation with a log-concavity constraint. This class of density functions is restricted to the convex hull of the empirical data, which naturally leads to shape distributions that comply with the ordering constraint of retina layers, by not assigning any probability mass to invalid shape configurations. We investigate a prominent approach from the literature, show its extensions from 2-D to N-D and apply it to retina boundary data

Glaucoma

This book addresses the basic and clinical science of glaucomas, a group of diseases that affect the optic nerve and visual fields and is usually accompanied by increased intraocular pressure. The book incorporates the latest development as well as future perspectives in glaucoma, since it has expedited publication. It is aimed for specialists in glaucoma, researchers, general ophthalmologists and trainees to increase knowledge and encourage further progress in understanding and managing these complicated diseases

Aspectos do rastreamento do glaucoma auxiliados por técnicas automatizadas em imagens com menor qualidade do disco óptico

O glaucoma é uma neuropatia óptica cuja progressão pode levar a cegueira. Representa a principal causa de perda visual de caráter irreversível em todo o mundo para homens e mulheres. A detecção precoce através de programas de rastreamento feita por especialistas é baseada nas características do nervo óptico, em biomarcadores oftalmológicos (destacando-se a pressão ocular) e exames subsidiários, com destaque ao campo visual e OCT. Após o reconhecimento dos casos é feito o tratamento com finalidade de estacionar a progressão da doença e melhorar a qualidade de vida dos pacientes. Contudo, estes programas têm limitações, principalmente em locais mais distantes dos grandes centros de tratamento especializado, insuficiência de equipamentos básicos e pessoal especializado para oferecer o rastreamento a toda a população, faltam meios para locomoção a estes centros, desinformação e desconhecimento da doença, além de características de progressão assintomática da doença. Esta tese aborda soluções inovadoras que podem contribuir para a automação do rastreamento do glaucoma utilizando aparelhos portáteis e mais baratos, considerando as necessidades reais dos clínicos durante o rastreamento. Para isso foram realizadas revisões sistemáticas sobre os métodos e equipamentos para apoio à triagem automática do glaucoma e os métodos de aprendizado profundo para a segmentação e classificação aplicáveis. Também foi feito um levantamento de questões médicas relativas à triagem do glaucoma e associá-las ao campo da inteligência artificial, para dar mais sentido as metodologias automatizadas. Além disso, foi criado um banco de dados privado, com vídeos e imagens de retina adquiridos por um smartphone acoplado a lente de baixo custo para o rastreamento do glaucoma e avaliado com métodos do estado da arte. Foram avaliados e analisados métodos de detecção automática de glaucoma utilizando métodos de aprendizado profundo de segmentação do disco e do copo óptico em banco de dados públicos de imagens de retina. Finalmente, foram avaliadas técnicas de mosaico e de detecção da cabeça do nervo óptico em imagens de baixa qualidade obtidas para pré-processamento de imagens adquiridas por smartphones acoplados a lente de baixo custo.Glaucoma is an optic neuropathy whose progression can lead to blindness. It represents the leading cause of irreversible visual loss worldwide for men and women. Early detection through screening programs carried out by specialists is based on the characteristics of the optic papilla, ophthalmic biomarkers (especially eye pressure), and subsidiary exams, emphasizing the visual field and optical coherence tomography (OCT). After recognizing the cases, the treatment is carried out to stop the progression of the disease and improve the quality of patients’ life. However, these screening programs have limitations, particularly in places further away from the sizeable, specialized treatment centers, due to the lack of essential equipment and technical personnel to offer screening to the entire population, due to the lack of means of transport to these centers, due to lack of information and lack of knowledge about the disease, considering the characteristics of asymptomatic progression of the disease. This thesis aims to develop innovative approaches to contribute to the automation of glaucoma screening using portable and cheaper devices, considering the real needs of clinicians during screening. For this, systematic reviews were carried out on the methods and equipment to support automatic glaucoma screening, and the applicable deep learning methods for segmentation and classification. A survey of medical issues related to glaucoma screening was carried out and associated with the field of artificial intelligence to make automated methodologies more effective. In addition, a private dataset was created, with videos and retina images acquired using a low-cost lens-coupled cell phone, for glaucoma screening and evaluated with state-of-the-art methods. Methods of automatic detection of glaucoma using deep learning methods of segmentation of the disc and optic cup were evaluated and analyzed in a public database of retinal images. In the case of deep learning classification methods, these were evaluated in public databases of retina images and in a private database with low-cost images. Finally, mosaic and object detection techniques were evaluated in low-quality images obtained for pre-processing images acquired by cell phones coupled with low-cost lenses