Exploring Decomposition for Solving Pattern Mining Problems

This article introduces a highly efficient pattern mining technique called Clustering-based Pattern Mining (CBPM). This technique discovers relevant patterns by studying the correlation between transactions in the transaction database based on clustering techniques. The set of transactions is first clustered, such that highly correlated transactions are grouped together. Next, we derive the relevant patterns by applying a pattern mining algorithm to each cluster. We present two different pattern mining algorithms, one applying an approximation-based strategy and another based on an exact strategy. The approximation-based strategy takes into account only the clusters, whereas the exact strategy takes into account both clusters and shared items between clusters. To boost the performance of the CBPM, a GPU-based implementation is investigated. To evaluate the CBPM framework, we perform extensive experiments on several pattern mining problems. The results from the experimental evaluation show that the CBPM provides a reduction in both the runtime and memory usage. Also, CBPM based on the approximate strategy provides good accuracy, demonstrating its effectiveness and feasibility. Our GPU implementation achieves significant speedup of up to 552× on a single GPU using big transaction databases.publishedVersio

An overview of decision table literature 1982-1995.

This report gives an overview of the literature on decision tables over the past 15 years. As much as possible, for each reference, an author supplied abstract, a number of keywords and a classification are provided. In some cases own comments are added. The purpose of these comments is to show where, how and why decision tables are used. The literature is classified according to application area, theoretical versus practical character, year of publication, country or origin (not necessarily country of publication) and the language of the document. After a description of the scope of the interview, classification results and the classification by topic are presented. The main body of the paper is the ordered list of publications with abstract, classification and comments.

Proceedings of the 2018 Joint Workshop of Fraunhofer IOSB and Institute for Anthropomatics, Vision and Fusion Laboratory

The Proceeding of the annual joint workshop of the Fraunhofer IOSB and the Vision and Fusion Laboratory (IES) 2018 of the KIT contain technical reports of the PhD-stundents on the status of their research. The discussed topics ranging from computer vision and optical metrology to network security and machine learning. This volume provides a comprehensive and up-to-date overview of the research program of the IES Laboratory and the Fraunhofer IOSB

An Introduction to Programming for Bioscientists: A Python-based Primer

Computing has revolutionized the biological sciences over the past several decades, such that virtually all contemporary research in the biosciences utilizes computer programs. The computational advances have come on many fronts, spurred by fundamental developments in hardware, software, and algorithms. These advances have influenced, and even engendered, a phenomenal array of bioscience fields, including molecular evolution and bioinformatics; genome-, proteome-, transcriptome- and metabolome-wide experimental studies; structural genomics; and atomistic simulations of cellular-scale molecular assemblies as large as ribosomes and intact viruses. In short, much of post-genomic biology is increasingly becoming a form of computational biology. The ability to design and write computer programs is among the most indispensable skills that a modern researcher can cultivate. Python has become a popular programming language in the biosciences, largely because (i) its straightforward semantics and clean syntax make it a readily accessible first language; (ii) it is expressive and well-suited to object-oriented programming, as well as other modern paradigms; and (iii) the many available libraries and third-party toolkits extend the functionality of the core language into virtually every biological domain (sequence and structure analyses, phylogenomics, workflow management systems, etc.). This primer offers a basic introduction to coding, via Python, and it includes concrete examples and exercises to illustrate the language's usage and capabilities; the main text culminates with a final project in structural bioinformatics. A suite of Supplemental Chapters is also provided. Starting with basic concepts, such as that of a 'variable', the Chapters methodically advance the reader to the point of writing a graphical user interface to compute the Hamming distance between two DNA sequences.Comment: 65 pages total, including 45 pages text, 3 figures, 4 tables, numerous exercises, and 19 pages of Supporting Information; currently in press at PLOS Computational Biolog

Towards Automatic Parallelization of Stream Processing Applications

Parallelizing and optimizing codes for recent multi-/many-core processors have been recognized to be a complex task. For this reason, strategies to automatically transform sequential codes into parallel and discover optimization opportunities are crucial to relieve the burden to developers. In this paper, we present a compile-time framework to (semi) automatically find parallel patterns (Pipeline and Farm) and transform sequential streaming applications into parallel using GrPPI, a generic parallel pattern interface. This framework uses a novel pipeline stage-balancing technique which provides the code generator module with the necessary information to produce balanced pipelines. The evaluation, using a synthetic video benchmark and a real-world computer vision application, demonstrates that the presented framework is capable of producing parallel and optimized versions of the application. A comparison study under several thread-core oversubscribed conditions reveals that the framework can bring comparable performance results with respect to the Intel TBB programming framework

Graph Processing on GPU

Ph.DDOCTOR OF PHILOSOPH