SINGLE TREE DELINEATION USING AIRBORNE LIDAR DATA

In this paper, single tree extraction was carried out using the first and last pulse airborne LIght Detection And Ranging (LIDAR) data. The LIDAR data was collected from TopoSys in May 2007 in the Milicz forest district, Poland, with a density of 7 points m-2. The total study area contains 25 circular plots of different radius according to the age of the trees. The absolute height of each point was obtained by normalizing the LIDAR raw data points using a digital terrain model (DTM) of the area. The value of σ used while smoothing was found higher for the deciduous tree dominating plots as compared to the coniferous plots. A modified k-means clustering algorithm was applied to extract the clusters of single tree above 4m height in each plot from the normalized LIDAR point clouds. 3-D convex polytope reconstruction from the extracted clusters of each tree was carried out using QHull algorithm. The validated result shows that an average of nearly 86% of the matured deciduous and 93% of the matured coniferous trees were extracted by the presented approach. Almost equal average accuracies were obtained in the case of young deciduous and coniferous tree species (58%). It seems that the algorithm did not work well with relatively younger tree types even after varying the parameters at pre-processing steps. The study showed that the adjustment of certain parameters like threshold distance, smoothing factor and scaling factor for the height before initialising the main process, has a substantial impact on the number and shape of the trees to be extracted more appropriately by applying the modified k-means procedure. There is a future scope of improving and testing the algorithm with different density of LIDAR data in different forest conditions

Automated forest inventory: analysis of high-density airborne LiDAR point clouds with 3D deep learning

Detailed forest inventories are critical for sustainable and flexible management of forest resources, to conserve various ecosystem services. Modern airborne laser scanners deliver high-density point clouds with great potential for fine-scale forest inventory and analysis, but automatically partitioning those point clouds into meaningful entities like individual trees or tree components remains a challenge. The present study aims to fill this gap and introduces a deep learning framework, termed ForAINet, that is able to perform such a segmentation across diverse forest types and geographic regions. From the segmented data, we then derive relevant biophysical parameters of individual trees as well as stands. The system has been tested on FOR-Instance, a dataset of point clouds that have been acquired in five different countries using surveying drones. The segmentation back-end achieves over 85% F-score for individual trees, respectively over 73% mean IoU across five semantic categories: ground, low vegetation, stems, live branches and dead branches. Building on the segmentation results our pipeline then densely calculates biophysical features of each individual tree (height, crown diameter, crown volume, DBH, and location) and properties per stand (digital terrain model and stand density). Especially crown-related features are in most cases retrieved with high accuracy, whereas the estimates for DBH and location are less reliable, due to the airborne scanning setup

Assessing the role of EO in biodiversity monitoring: options for integrating in-situ observations with EO within the context of the EBONE concept

The European Biodiversity Observation Network (EBONE) is a European contribution on terrestrial monitoring to GEO BON, the Group on Earth Observations Biodiversity Observation Network. EBONE’s aims are to develop a system of biodiversity observation at regional, national and European levels by assessing existing approaches in terms of their validity and applicability starting in Europe, then expanding to regions in Africa. The objective of EBONE is to deliver: 1. A sound scientific basis for the production of statistical estimates of stock and change of key indicators; 2. The development of a system for estimating past changes and forecasting and testing policy options and management strategies for threatened ecosystems and species; 3. A proposal for a cost-effective biodiversity monitoring system. There is a consensus that Earth Observation (EO) has a role to play in monitoring biodiversity. With its capacity to observe detailed spatial patterns and variability across large areas at regular intervals, our instinct suggests that EO could deliver the type of spatial and temporal coverage that is beyond reach with in-situ efforts. Furthermore, when considering the emerging networks of in-situ observations, the prospect of enhancing the quality of the information whilst reducing cost through integration is compelling. This report gives a realistic assessment of the role of EO in biodiversity monitoring and the options for integrating in-situ observations with EO within the context of the EBONE concept (cfr. EBONE-ID1.4). The assessment is mainly based on a set of targeted pilot studies. Building on this assessment, the report then presents a series of recommendations on the best options for using EO in an effective, consistent and sustainable biodiversity monitoring scheme. The issues that we faced were many: 1. Integration can be interpreted in different ways. One possible interpretation is: the combined use of independent data sets to deliver a different but improved data set; another is: the use of one data set to complement another dataset. 2. The targeted improvement will vary with stakeholder group: some will seek for more efficiency, others for more reliable estimates (accuracy and/or precision); others for more detail in space and/or time or more of everything. 3. Integration requires a link between the datasets (EO and in-situ). The strength of the link between reflected electromagnetic radiation and the habitats and their biodiversity observed in-situ is function of many variables, for example: the spatial scale of the observations; timing of the observations; the adopted nomenclature for classification; the complexity of the landscape in terms of composition, spatial structure and the physical environment; the habitat and land cover types under consideration. 4. The type of the EO data available varies (function of e.g. budget, size and location of region, cloudiness, national and/or international investment in airborne campaigns or space technology) which determines its capability to deliver the required output. EO and in-situ could be combined in different ways, depending on the type of integration we wanted to achieve and the targeted improvement. We aimed for an improvement in accuracy (i.e. the reduction in error of our indicator estimate calculated for an environmental zone). Furthermore, EO would also provide the spatial patterns for correlated in-situ data. EBONE in its initial development, focused on three main indicators covering: (i) the extent and change of habitats of European interest in the context of a general habitat assessment; (ii) abundance and distribution of selected species (birds, butterflies and plants); and (iii) fragmentation of natural and semi-natural areas. For habitat extent, we decided that it did not matter how in-situ was integrated with EO as long as we could demonstrate that acceptable accuracies could be achieved and the precision could consistently be improved. The nomenclature used to map habitats in-situ was the General Habitat Classification. We considered the following options where the EO and in-situ play different roles: using in-situ samples to re-calibrate a habitat map independently derived from EO; improving the accuracy of in-situ sampled habitat statistics, by post-stratification with correlated EO data; and using in-situ samples to train the classification of EO data into habitat types where the EO data delivers full coverage or a larger number of samples. For some of the above cases we also considered the impact that the sampling strategy employed to deliver the samples would have on the accuracy and precision achieved. Restricted access to European wide species data prevented work on the indicator ‘abundance and distribution of species’. With respect to the indicator ‘fragmentation’, we investigated ways of delivering EO derived measures of habitat patterns that are meaningful to sampled in-situ observations

Comparison of Errors Produced by ABA and ITC Methods for the Estimation of Forest Inventory Attributes at Stand and Tree Level in Pinus radiata Plantations in Chile

Airborne laser scanning (ALS) technology is fully implemented in forest resource assessment processes, providing highly accurate and spatially continuous results throughout the area of interest, thus reducing inventory costs when compared with traditional sampling inventories. Several approaches have been employed to estimate forest parameters using ALS data, such as the Area-Based Approach (ABA) and Individual Tree Crown (ITC). These two methodologies use different information processing and field data collection approaches; thus, it is important to have a selection criterion for the method to be used based on the expected results and admissible errors. The objective of this study was to compare the prediction errors of forest inventory attributes in the functioning of ABA and ITC approaches. A plantation of 500 ha of Pinus radiata (400–600 trees ha−1) in Chile was selected; a forest inventory was conducted using the ABA and ITC methods and the accuracy of both methods was analyzed. The ITC models performed better than the ABA models at low tree densities for all forest inventory attributes (15% MAPE in tree density—N—and 11% in volume—V). There was no significant difference in precision regarding the volume and basal area (G) estimations at medium densities, although ITC obtained better results for density and dominant height (Ho). At high densities, ABA performed better for all the attributes except for height (6.5% MAPE in N, 8.7% in G, and 8.9% in V). Our results showed that the precision of forest inventories based on ALS data can be adjusted depending on tree density to optimize the selected approach (ABA and ITC), thus reducing the inventory costs. Hence, field efforts can be greatly decreased while achieving better prediction accuracies

Individual Tree Measurements From Three-Dimensional Point Clouds

This study develops and tests novel methodologies for measuring the attributes of individual trees from three-dimensional point clouds generated from an aerial platform. Recently, advancements in technology have allowed for the acquisition of very high resolution three-dimensional point clouds that can be used to map the forest in a virtual environment. These point clouds can be interpreted to produce valuable forest attributes across entire landscapes with minimal field labor, which can then aid forest managers in their planning and decision making. Biometrics derived from point clouds are often generated on a plot level, with estimates spanning many meters (rather than at the scale of individual the individual tree), a process known as area-based estimation. As the resolution of point clouds has increased however, the structural attributes of individual trees can now be distinguished and measured, which allows for tree lists including species and size metrics for individual trees. This information can be of great use to forester managers; thus, it is essential that proper methods be developed for measuring these trees. To this end, an algorithm called layer stacking, was developed to isolate points representing the shapes of individual trees from a Light Detection and Ranging (LiDAR) derived point cloud, a process called segmentation. The validity of this algorithm was assessed in a variety of forest stand types, and comparisons were made to another popular tree segmentation algorithm (i.e., watershed delineation). Results indicated that when compared to watershed delineation, layer stacking produced similar or improved detection rates in almost all forest stands, and excelled in deciduous forests, which have traditionally been challenging to segment. The algorithm was then implemented on a large scale, for individual measurements on over 200,000 trees. The species and diameter of each tree was predicted via modeling from structural and reflectance characteristics, and allometric equations were used to obtain volume and carbon content of each tree. These estimates were then compared to measurements taken in the field, and to area-based estimates. Results indicated improved accuracy of plot level basal area, volume, and carbon estimation over traditional area-based estimation, as well as moderately reliable individual tree estimates, and highly reliable species identification. Finally, because LiDAR point clouds can be expensive to acquire, point clouds generated from aerial photos via structure-from-motion (SfM) reconstruction were evaluated for their accuracy at a tree level. An analysis between tree height measurements obtained by SfM, SfM in conjunction with LiDAR, LiDAR alone, digital stereo-photo interpretation, and field measurements was conducted. Results indicated no difference between SfM in conjunction with LiDAR and LiDAR alone. We concluded that SfM represents a valid low cost means of producing a point cloud dense enough to measure individual trees. Thus, high resolution point clouds can be used to generate forest inventories containing a number of valuable biometrics, such as tree height, species, volume, biomass, and carbon mass. Such estimates may allow for the automatic development of large-scale, detailed, and precise forest inventories without the cost, effort, and safety concerns associated with extensive field inventories

Assesment of biomass and carbon dynamics in pine forests of the Spanish central range: A remote sensing approach

Forests play a dynamic role in the terrestrial carbon (C) budget, by means of the biomass stock and C fluxes involved in photosynthesis and respiration. Remote sensing in combination with data analysis constitute a practical means for evaluation of forest implications in the carbon cycle, providing spatially explicit estimations of the amount, quality, and spatio-temporal dynamics of biomass and C stocks. Medium and high spatial resolution optical data from satellite-borne sensors were employed, supported by field measures, to investigate the carbon role of Mediterranean pines in the Central Range of Spain during a 25 year period (1984-2009). The location, extent, and distribution of pine forests were characterized, and spatial changes occurred in three sub-periods were evaluated. Capitalizing on temporal series of spectral data from Landsat sensors, novel techniques for processing and data analysis were developed to identify successional processes at the landscape level, and to characterize carbon stocking condition locally, enabling simultaneous characterization of trends and patterns of change. High spatial resolution data captured by the commercial satellite QuickBird-2 were employed to model structural attributes at the stand level, and to explore forest structural diversity

A Structural Classification of Australian Vegetation Using ICESat/GLAS, ALOS PALSAR and Landsat Sensor Data

Australia has historically used structural descriptors of height and cover to characterize, differentiate, and map the distribution of woody vegetation across the continent but no national satellite-based structural classification has been available. In this study, we present a new 30-m spatial resolution reference map of Australian forest and woodland structure (height and cover), with this generated by integrating Landsat Thematic Mapper (TM) and Enhanced TM, Advanced Land Observing Satellite (ALOS) Phased Arrayed L-band Synthetic Aperture Radar (PALSAR) and Ice, Cloud, and land Elevation (ICESat),and Geoscience Laser Altimeter System (GLAS) data. ALOS PALSAR and Landsat-derived Foliage Projective Cover (FPC) were used to segment and classify the Australian landscape. Then, from intersecting ICESat waveform data, vertical foliage profiles and height metrics (e.g., 95% percentile height, mean height and the height to maximum vegetation density) were extracted for each of the classes generated. Within each class, and for selected areas, the variability in ICESat profiles was found to be similar with differences between segments of the same class attributed largely to clearance or disturbance events. ICESat metrics and profiles were then assigned to all remaining segments across Australia with the same class allocation. Validation against airborne LiDAR for a range of forest structural types indicated a high degree of correspondence in estimated height measures. On this basis, a map of vegetation height was generated at a national level and was combined with estimates of cover to produce a revised structural classification based on the scheme of the Australian National Vegetation Information System (NVIS). The benefits of integrating the three datasets for segmenting and classifying the landscape and retrieving biophysical attributes was highlighted with this leading the way for future mapping using ALOS-2 PALSAR-2, Landsat/Sentinel-2, Global Ecosystem Dynamics Investigation (GEDI), and ICESat-2 LiDAR data. The ability to map across large areas provides considerable benefits for quantifying carbon dynamics and informing on biodiversity metrics