Graph analysis of functional brain networks: practical issues in translational neuroscience

The brain can be regarded as a network: a connected system where nodes, or units, represent different specialized regions and links, or connections, represent communication pathways. From a functional perspective communication is coded by temporal dependence between the activities of different brain areas. In the last decade, the abstract representation of the brain as a graph has allowed to visualize functional brain networks and describe their non-trivial topological properties in a compact and objective way. Nowadays, the use of graph analysis in translational neuroscience has become essential to quantify brain dysfunctions in terms of aberrant reconfiguration of functional brain networks. Despite its evident impact, graph analysis of functional brain networks is not a simple toolbox that can be blindly applied to brain signals. On the one hand, it requires a know-how of all the methodological steps of the processing pipeline that manipulates the input brain signals and extract the functional network properties. On the other hand, a knowledge of the neural phenomenon under study is required to perform physiological-relevant analysis. The aim of this review is to provide practical indications to make sense of brain network analysis and contrast counterproductive attitudes

Investigation of Northrop F-5A wing buffet intensity in transonic flight

A flight test and data processing program utilizing a Northrop F-5A aircraft instrumented to acquire buffet pressures and response data during transonic maneuvers is discussed. The data are presented in real-time format followed by spectral and statistical analyses. Also covered is a comparison of the aircraft response data with computed responses based on the measured buffet pressures

Project OASIS: The Design of a Signal Detector for the Search for Extraterrestrial Intelligence

An 8 million channel spectrum analyzer (MCSA) was designed the meet to meet the needs of a SETI program. The MCSA puts out a very large data base at very high rates. The development of a device which follows the MCSA, is presented

Seizure-onset mapping based on time-variant multivariate functional connectivity analysis of high-dimensional intracranial EEG : a Kalman filter approach

The visual interpretation of intracranial EEG (iEEG) is the standard method used in complex epilepsy surgery cases to map the regions of seizure onset targeted for resection. Still, visual iEEG analysis is labor-intensive and biased due to interpreter dependency. Multivariate parametric functional connectivity measures using adaptive autoregressive (AR) modeling of the iEEG signals based on the Kalman filter algorithm have been used successfully to localize the electrographic seizure onsets. Due to their high computational cost, these methods have been applied to a limited number of iEEG time-series (< 60). The aim of this study was to test two Kalman filter implementations, a well-known multivariate adaptive AR model (Arnold et al. 1998) and a simplified, computationally efficient derivation of it, for their potential application to connectivity analysis of high-dimensional (up to 192 channels) iEEG data. When used on simulated seizures together with a multivariate connectivity estimator, the partial directed coherence, the two AR models were compared for their ability to reconstitute the designed seizure signal connections from noisy data. Next, focal seizures from iEEG recordings (73-113 channels) in three patients rendered seizure-free after surgery were mapped with the outdegree, a graph-theory index of outward directed connectivity. Simulation results indicated high levels of mapping accuracy for the two models in the presence of low-to-moderate noise cross-correlation. Accordingly, both AR models correctly mapped the real seizure onset to the resection volume. This study supports the possibility of conducting fully data-driven multivariate connectivity estimations on high-dimensional iEEG datasets using the Kalman filter approach

Investigating carbon materials nanostructure using image orientation statistics

International audienceA new characterization method of the lattice fringe images of turbostratic carbons is proposed. This method is based on the computation of their orientation field without explicit detection of fringes. It allows meaningful insights into the material nanostructure and nanotexture at several scales, either qualitatively or quantitatively. The calculation of pairwise spatial statistics of the orientation field at short distance provides measurements of the coherence lengths along any direction, in particular along and orthogonally to the layers. These statistics also allow representing orientation coherence patterns typical of the observed nanostructure. At larger distances, the mean disorientation of the fringes is computed and information about the homogeneity of the sample is obtained. An experimental validation is carried out on various artificial images and an application to the characterization of four bulk turbostratic carbons is provided

Fast 3D super-resolution ultrasound with adaptive weight-based beamforming

Objective: Super-resolution ultrasound (SRUS) imaging through localising and tracking sparse microbubbles has been shown to reveal microvascular structure and flow beyond the wave diffraction limit. Most SRUS studies use standard delay and sum (DAS) beamforming, where high side lobes and broad main lobes make isolation and localisation of densely distributed bubbles challenging, particularly in 3D due to the typically small aperture of matrix array probes. Method: This study aimed to improve 3D SRUS by implementing a new fast 3D coherence beamformer based on channel signal variance. Two additional fast coherence beamformers, that have been implemented in 2D were implemented in 3D for the first time as comparison: a nonlinear beamformer with p-th root compression and a coherence factor beamformer. The 3D coherence beamformers, together with DAS, were compared in computer simulation, on a microflow phantom and in vivo. Results: Simulation results demonstrated that all three adaptive weight-based beamformers can narrow the main lobe suppress the side lobes, while maintaining the weaker scatter signals. Improved 3D SRUS images of microflow phantom and a rabbit kidney within a 3-second acquisition were obtained using the adaptive weight-based beamformers, when compared with DAS. Conclusion: The adaptive weight-based 3D beamformers can improve the SRUS and the proposed variance-based beamformer performs best in simulations and experiments. Significance: Fast 3D SRUS would significantly enhance the potential utility of this emerging imaging modality in a broad range of biomedical applications

Dynamics of large-scale brain activity in health and disease

Tese de doutoramento em Engenharia Biomédica e Biofísica, apresentada à Universidade de Lisboa através da Faculdade de Ciências, 2008Cognition relies on the integration of information processed in widely distributed brain regions. Neuronal oscillations are thought to play an important role in the supporting local and global coordination of neuronal activity. This study aimed at investigating the dynamics of the ongoing healthy brain activity and early changes observed in patients with Alzheimer's disease (AD). Electro- and magnetoencephalography (EEG/MEG) were used due to high temporal resolution of these techniques. In order to evaluate the functional connectivity in AD, a novel algorithm based on the concept of generalized synchronization was improved by defining the embedding parameters as a function of the frequency content of interest. The time-frequency synchronization likelihood (TF SL) revealed a loss of fronto-temporal/parietal interactions in the lower alpha (8 10 Hz) oscillations measured by MEG that was not found with classical coherence. Further, long-range temporal (auto-) correlations (LRTC) in ongoing oscillations were assessed with detrended fluctuation analysis (DFA) on times scales from 1 25 seconds. Significant auto-correlations indicate a dependence of the underlying dynamical processes at certain time scales of separation, which may be viewed as a form of "physiological memory". We tested whether the DFA index could be related to the decline in cognitive memory in AD. Indeed, a significant decrease in the DFA exponents was observed in the alpha band (6 13 Hz) over temporo-parietal regions in the patients compared with the age-matched healthy control subjects. Finally, the mean level of SL of EEG signals was found to be significantly decreased in the AD patients in the beta (13 30 Hz) and in the upper alpha (10 13 Hz) and the DFA exponents computed as a measure of the temporal structure of SL time series were larger for the patients than for subjects with subjective memory complaint. The results obtained indicate that the study of spatio-temporal dynamics of resting-state EEG/MEG brain activity provides valuable information about the AD pathophysiology, which potentially could be developed into clinically useful indices for assessing progression of AD or response to medication

Investigating complex networks with inverse models: analytical aspects of spatial leakage and connectivity estimation

Network theory and inverse modeling are two standard tools of applied physics, whose combination is needed when studying the dynamical organization of spatially distributed systems from indirect measurements. However, the associated connectivity estimation may be affected by spatial leakage, an artifact of inverse modeling that limits the interpretability of network analysis. This paper investigates general analytical aspects pertaining to this issue. First, the existence of spatial leakage is derived from the topological structure of inverse operators. Then, the geometry of spatial leakage is modeled and used to define a geometric correction scheme, which limits spatial leakage effects in connectivity estimation. Finally, this new approach for network analysis is compared analytically to existing methods based on linear regressions, which are shown to yield biased coupling estimates.Comment: 19 pages, 4 figures, including 5 appendices; v2: minor edits, 1 appendix added; v3: expanded version, v4: minor edit

Michelson Interferometry with the Keck I Telescope

We report the first use of Michelson interferometry on the Keck I telescope for diffraction-limited imaging in the near infrared JHK and L bands. By using an aperture mask located close to the f/25 secondary, the 10 m Keck primary mirror was transformed into a separate-element, multiple aperture interferometer. This has allowed diffraction-limited imaging of a large number of bright astrophysical targets, including the geometrically complex dust envelopes around a number of evolved stars. The successful restoration of these images, with dynamic ranges in excess of 200:1, highlights the significant capabilities of sparse aperture imaging as compared with more conventional filled-pupil speckle imaging for the class of bright targets considered here. In particular the enhancement of the signal-to-noise ratio of the Fourier data, precipitated by the reduction in atmospheric noise, allows high fidelity imaging of complex sources with small numbers of short-exposure images relative to speckle. Multi-epoch measurements confirm the reliability of this imaging technique and our whole dataset provides a powerful demonstration of the capabilities of aperture masking methods when utilized with the current generation of large-aperture telescopes. The relationship between these new results and recent advances in interferometry and adaptive optics is briefly discussed.Comment: Accepted into Publications of the Astronomical Society of the Pacific. To appear in vol. 112. Paper contains 10 pages, 8 figure

3D Super-Resolution Ultrasound with Adaptive Weight-Based Beamforming

Super-resolution ultrasound (SRUS) imaging through localising and tracking sparse microbubbles has been shown to reveal microvascular structure and flow beyond the wave diffraction limit. Most SRUS studies use standard delay and sum (DAS) beamforming, where large main lobe and significant side lobes make separation and localisation of densely distributed bubbles challenging, particularly in 3D due to the typically small aperture of matrix array probes. This study aims to improve 3D SRUS by implementing a low-cost 3D coherence beamformer based on channel signal variance, as well as two other adaptive weight-based coherence beamformers: nonlinear beamforming with p-th root compression and coherence factor. The 3D coherence beamformers, together with DAS, are compared in computer simulation, on a microflow phantom, and in vivo. Simulation results demonstrate that the adaptive weight-based beamformers can significantly narrow the main lobe and suppress the side lobes for modest computational cost. Significantly improved 3D SR images of microflow phantom and a rabbit kidney are obtained through the adaptive weight-based beamformers. The proposed variance-based beamformer performs best in simulations and experiments.Comment: Ultrasound localisation microscopy (ULM), super-resolution, contrast-enhanced ultrasound, 3D beamformin