10,139 research outputs found
From Physics Model to Results: An Optimizing Framework for Cross-Architecture Code Generation
Starting from a high-level problem description in terms of partial
differential equations using abstract tensor notation, the Chemora framework
discretizes, optimizes, and generates complete high performance codes for a
wide range of compute architectures. Chemora extends the capabilities of
Cactus, facilitating the usage of large-scale CPU/GPU systems in an efficient
manner for complex applications, without low-level code tuning. Chemora
achieves parallelism through MPI and multi-threading, combining OpenMP and
CUDA. Optimizations include high-level code transformations, efficient loop
traversal strategies, dynamically selected data and instruction cache usage
strategies, and JIT compilation of GPU code tailored to the problem
characteristics. The discretization is based on higher-order finite differences
on multi-block domains. Chemora's capabilities are demonstrated by simulations
of black hole collisions. This problem provides an acid test of the framework,
as the Einstein equations contain hundreds of variables and thousands of terms.Comment: 18 pages, 4 figures, accepted for publication in Scientific
Programmin
High-level programming of stencil computations on multi-GPU systems using the SkelCL library
The implementation of stencil computations on modern, massively parallel systems with GPUs and other accelerators currently relies on manually-tuned coding using low-level approaches like OpenCL and CUDA. This makes development of stencil applications a complex, time-consuming, and error-prone task. We describe how stencil computations can be programmed in our SkelCL approach that combines high-level programming abstractions with competitive performance on multi-GPU systems. SkelCL extends the OpenCL standard by three high-level features: 1) pre-implemented parallel patterns (a.k.a. skeletons); 2) container data types for vectors and matrices; 3) automatic data (re)distribution mechanism. We introduce two new SkelCL skeletons which specifically target stencil computations – MapOverlap and Stencil – and we describe their use for particular application examples, discuss their efficient parallel implementation, and report experimental results on systems with multiple GPUs. Our evaluation of three real-world applications shows that stencil code written with SkelCL is considerably shorter and offers competitive performance to hand-tuned OpenCL code
First Evaluation of the CPU, GPGPU and MIC Architectures for Real Time Particle Tracking based on Hough Transform at the LHC
Recent innovations focused around {\em parallel} processing, either through
systems containing multiple processors or processors containing multiple cores,
hold great promise for enhancing the performance of the trigger at the LHC and
extending its physics program. The flexibility of the CMS/ATLAS trigger system
allows for easy integration of computational accelerators, such as NVIDIA's
Tesla Graphics Processing Unit (GPU) or Intel's \xphi, in the High Level
Trigger. These accelerators have the potential to provide faster or more energy
efficient event selection, thus opening up possibilities for new complex
triggers that were not previously feasible. At the same time, it is crucial to
explore the performance limits achievable on the latest generation multicore
CPUs with the use of the best software optimization methods. In this article, a
new tracking algorithm based on the Hough transform will be evaluated for the
first time on a multi-core Intel Xeon E5-2697v2 CPU, an NVIDIA Tesla K20c GPU,
and an Intel \xphi\ 7120 coprocessor. Preliminary time performance will be
presented.Comment: 13 pages, 4 figures, Accepted to JINS
A Comparative Analysis of STM Approaches to Reduction Operations in Irregular Applications
As a recently consolidated paradigm for optimistic concurrency in modern multicore architectures, Transactional Memory (TM)
can help to the exploitation of parallelism in irregular applications when data dependence information is not available up to run-
time. This paper presents and discusses how to leverage TM to exploit parallelism in an important class of irregular applications, the class that exhibits irregular reduction patterns. In order to test and compare our techniques with other solutions, they were implemented in a software TM system called ReduxSTM, that acts as a proof of concept. Basically, ReduxSTM combines two major ideas: a sequential-equivalent ordering of transaction commits that assures the correct result, and an extension of the underlying TM privatization mechanism to reduce unnecessary overhead due to reduction memory updates as well as unnecesary aborts and rollbacks. A comparative study of STM solutions, including ReduxSTM, and other more classical approaches to the parallelization of reduction operations is presented in terms of time, memory and overhead.Universidad de Málaga. Campus de Excelencia Internacional Andalucía Tech
Towards Exascale Scientific Metadata Management
Advances in technology and computing hardware are enabling scientists from
all areas of science to produce massive amounts of data using large-scale
simulations or observational facilities. In this era of data deluge, effective
coordination between the data production and the analysis phases hinges on the
availability of metadata that describe the scientific datasets. Existing
workflow engines have been capturing a limited form of metadata to provide
provenance information about the identity and lineage of the data. However,
much of the data produced by simulations, experiments, and analyses still need
to be annotated manually in an ad hoc manner by domain scientists. Systematic
and transparent acquisition of rich metadata becomes a crucial prerequisite to
sustain and accelerate the pace of scientific innovation. Yet, ubiquitous and
domain-agnostic metadata management infrastructure that can meet the demands of
extreme-scale science is notable by its absence.
To address this gap in scientific data management research and practice, we
present our vision for an integrated approach that (1) automatically captures
and manipulates information-rich metadata while the data is being produced or
analyzed and (2) stores metadata within each dataset to permeate
metadata-oblivious processes and to query metadata through established and
standardized data access interfaces. We motivate the need for the proposed
integrated approach using applications from plasma physics, climate modeling
and neuroscience, and then discuss research challenges and possible solutions
A Survey of Techniques for Improving Security of GPUs
Graphics processing unit (GPU), although a powerful performance-booster, also
has many security vulnerabilities. Due to these, the GPU can act as a
safe-haven for stealthy malware and the weakest `link' in the security `chain'.
In this paper, we present a survey of techniques for analyzing and improving
GPU security. We classify the works on key attributes to highlight their
similarities and differences. More than informing users and researchers about
GPU security techniques, this survey aims to increase their awareness about GPU
security vulnerabilities and potential countermeasures
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