Anytime Hierarchical Clustering

We propose a new anytime hierarchical clustering method that iteratively transforms an arbitrary initial hierarchy on the configuration of measurements along a sequence of trees we prove for a fixed data set must terminate in a chain of nested partitions that satisfies a natural homogeneity requirement. Each recursive step re-edits the tree so as to improve a local measure of cluster homogeneity that is compatible with a number of commonly used (e.g., single, average, complete) linkage functions. As an alternative to the standard batch algorithms, we present numerical evidence to suggest that appropriate adaptations of this method can yield decentralized, scalable algorithms suitable for distributed/parallel computation of clustering hierarchies and online tracking of clustering trees applicable to large, dynamically changing databases and anomaly detection.Comment: 13 pages, 6 figures, 5 tables, in preparation for submission to a conferenc

Belief Hierarchical Clustering

In the data mining field many clustering methods have been proposed, yet standard versions do not take into account uncertain databases. This paper deals with a new approach to cluster uncertain data by using a hierarchical clustering defined within the belief function framework. The main objective of the belief hierarchical clustering is to allow an object to belong to one or several clusters. To each belonging, a degree of belief is associated, and clusters are combined based on the pignistic properties. Experiments with real uncertain data show that our proposed method can be considered as a propitious tool

Isotropic Dynamic Hierarchical Clustering

We face a need of discovering a pattern in locations of a great number of points in a high-dimensional space. Goal is to group the close points together. We are interested in a hierarchical structure, like a B-tree. B-Trees are hierarchical, balanced, and they can be constructed dynamically. B-Tree approach allows to determine the structure without any supervised learning or a priori knowlwdge. The space is Euclidean and isotropic. Unfortunately, there are no B-Tree implementations processing indices in a symmetrical and isotropical way. Some implementations are based on constructing compound asymmetrical indices from point coordinates; and the others split the nodes along the coordinate hyper-planes. We need to process tens of millions of points in a thousand-dimensional space. The application has to be scalable. Ideally, a cluster should be an ellipsoid, but it would require to store O(n2) ellipse axes. So, we are using multi-dimensional balls defined by the centers and radii. Calculation of statistical values like the mean and the average deviation, can be done in an incremental way. While adding a point to a tree, the statistical values for nodes recalculated in O(1) time. We support both, brute force O(2n) and greedy O(n2) split algorithms. Statistical and aggregated node information also allows to manipulate (to search, to delete) aggregated sets of closely located points. Hierarchical information retrieval. When searching, the user is provided with the highest appropriate nodes in the tree hierarchy, with the most important clusters emerging in the hierarchy automatically. Then, if interested, the user may navigate down the tree to more specific points. The system is implemented as a library of Java classes representing Points, Sets of points with aggregated statistical information, B-tree, and Nodes with a support of serialization and storage in a MySQL database.Comment: 6 pages with 3 example

Bias and Hierarchical Clustering

It is now well established that galaxies are biased tracers of the distribution of matter, although it is still not known what form this bias takes. In local bias models the propensity for a galaxy to form at a point depends only on the overall density of matter at that point. Hierarchical scaling arguments allow one to build a fully-specified model of the underlying distribution of matter and to explore the effects of local bias in the regime of strong clustering. Using a generating-function method developed by Bernardeau & Schaeffer (1992), we show that hierarchical models lead one directly to the conclusion that a local bias does not alter the shape of the galaxy correlation function relative to the matter correlation function on large scales. This provides an elegant extension of a result first obtained by Coles (1993) for Gaussian underlying fields and confirms the conclusions of Scherrer & Weinberg (1998) obtained using a different approach. We also argue that particularly dense regions in a hierarchical density field display a form of bias that is different from that obtained by selecting such peaks in Gaussian fields: they are themselves hierarchically distributed with scaling parameters $S_p=p^{(p-2)}$. This kind of bias is also factorizable, thus in principle furnishing a simple test of this class of models.Comment: Latex, accepted for publication in ApJL; moderate revision

Methods of Hierarchical Clustering

We survey agglomerative hierarchical clustering algorithms and discuss efficient implementations that are available in R and other software environments. We look at hierarchical self-organizing maps, and mixture models. We review grid-based clustering, focusing on hierarchical density-based approaches. Finally we describe a recently developed very efficient (linear time) hierarchical clustering algorithm, which can also be viewed as a hierarchical grid-based algorithm.Comment: 21 pages, 2 figures, 1 table, 69 reference

Hierarchical growing cell structures: TreeGCS

We propose a hierarchical clustering algorithm (TreeGCS) based upon the Growing Cell Structure (GCS) neural network of Fritzke. Our algorithm refines and builds upon the GCS base, overcoming an inconsistency in the original GCS algorithm, where the network topology is susceptible to the ordering of the input vectors. Our algorithm is unsupervised, flexible, and dynamic and we have imposed no additional parameters on the underlying GCS algorithm. Our ultimate aim is a hierarchical clustering neural network that is both consistent and stable and identifies the innate hierarchical structure present in vector-based data. We demonstrate improved stability of the GCS foundation and evaluate our algorithm against the hierarchy generated by an ascendant hierarchical clustering dendogram. Our approach emulates the hierarchical clustering of the dendogram. It demonstrates the importance of the parameter settings for GCS and how they affect the stability of the clustering

HIERARCHICAL CLUSTERING USING LEVEL SETS

Over the past several decades, clustering algorithms have earned their place as a go-to solution for database mining. This paper introduces a new concept which is used to develop a new recursive version of DBSCAN that can successfully perform hierarchical clustering, called Level- Set Clustering (LSC). A level-set is a subset of points of a data-set whose densities are greater than some threshold, ‘t’. By graphing the size of each level-set against its respective ‘t,’ indents are produced in the line graph which correspond to clusters in the data-set, as the points in a cluster have very similar densities. This new algorithm is able to produce the clustering result with the same O(n log n) time complexity as DBSCAN and OPTICS, while catching clusters the others missed