Dynamical approach to spectator fragmentation in Au+Au reactions at 35 MeV/A

The characteristics of fragment emission in peripheral $^{197}$Au+$^{197}$Au collisions 35 MeV/A are studied using the two clusterization approaches within framework of \emph{quantum molecular dynamics} model. Our model calculations using \emph{minimum spanning tree} (MST) algorithm and advanced clusterization method namely \emph{simulated annealing clusterization algorithm} (SACA) showed that fragment structure can be realized at an earlier time when spectators contribute significantly toward the fragment production even at such a low incident energy. Comparison of model predictions with experimental data reveals that SACA method can nicely reproduce the fragment charge yields and mean charge of the heaviest fragment. This reflects suitability of SACA method over conventional clusterization techniques to investigate spectator matter fragmentation in low energy domain.Comment: 6 pages, 5 figures, accepte

Complex structures in generalized small worlds

We propose a generalization of small world networks, in which the reconnection of links is governed by a function that depends on the distance between the elements to be linked. An adequate choice of this function lets us control the clusterization of the system. Control of the clusterization, in turn, allows the generation of a wide variety of topologies.Comment: 4 pages, 6 figures, RevTe

Local modularity measure for network clusterizations

Many complex networks have an underlying modular structure, i.e., structural subunits (communities or clusters) characterized by highly interconnected nodes. The modularity $Q$ has been introduced as a measure to assess the quality of clusterizations. $Q$ has a global view, while in many real-world networks clusters are linked mainly \emph{locally} among each other (\emph{local cluster-connectivity}). Here, we introduce a new measure, localized modularity $LQ$, which reflects local cluster structure. Optimization of $Q$ and $LQ$ on the clusterization of two biological networks shows that the localized modularity identifies more cohesive clusters, yielding a complementary view of higher granularity.Comment: 5 pages, 4 figures, RevTex4; Changed conten

Estimation of protein folding probability from equilibrium simulations

The assumption that similar structures have similar folding probabilities ($p_{fold}$) leads naturally to a procedure to evaluate $p_{fold}$ for every snapshot saved along an equilibrium folding-unfolding trajectory of a structured peptide or protein. The procedure utilizes a structurally homogeneous clustering and does not require any additional simulation. It can be used to detect multiple folding pathways as shown for a three-stranded antiparallel $\beta$-sheet peptide investigated by implicit solvent molecular dynamics simulations.Comment: 7 pages, 4 figures, supplemetary material

Theoretical description of mixed film formation at the air/water interface : carboxylic acids–fatty amines

Thermodynamic parameters of mixed monolayer formation of aliphatic amines CnH2n+1NH2 and carboxylic acids CnH2n+1COOH (n = 6–16) are calculated using the quantum chemical semiempirical PM3 method. Four types of mixed dimers and tetramers amine–acid are considered. The total contribution of interactions between the hydrophilic parts of amine and acid into clusterization Gibbs energy is slightly lower than the corresponding interactions for individual surfactants. It suggests a synergetic interaction between the regarded amphiphilic compounds as proved by experimental data in the literature. Two types of competitive film formation are possible: mixed 2D film 1, where the molecules of the minor component are single distributed among the molecules of the prevailing second component (mixture of components on molecular level), and 2D film 2 with a domain structure comprised of pure component “islands” linked together. The dependence of the Gibbs energy of clusterization per monomer for 2D film 1 on the component mole fraction shows that the maximum synergetic effect is typical for the case that both surfactants have the same even number of carbon atoms in the hydrocarbon chain and form an equimolar mixture. Formation of 2D film 1 is more preferable than that of 2D film 2, if the difference of the hydrocarbon chain lengths is not larger than 5 methylene units. The limiting mole fraction of carboxylic acids in such mixed monolayers is 66.7%

Jet analysis by Deterministic Annealing

We perform a comparison of two jet clusterization algorithms. The first one is the standard Durham algorithm and the second one is a global optimization scheme, Deterministic Annealing, often used in clusterization problems, and adapted to the problem of jet identification in particle production by high energy collisions; in particular we study hadronic jets in WW production by high energy electron positron scattering. Our results are as follows. First, we find that the two procedures give basically the same output as far as the particle clusterization is concerned. Second, we find that the increase of CPU time with the particle multiplicity is much faster for the Durham jet clustering algorithm in comparison with Deterministic Annealing. Since this result follows from the higher computational complexity of the Durham scheme, it should not depend on the particular process studied here and might be significant for jet physics at LHC as well.Comment: 15 pages, 4 figure

Spectator matter fragmentation in Au+Au reactions: Phase space analysis

Clusterization in phase space has been analyzed for peripheral Au+Au reactions at 1000 AMeV using simulated annealing clusterization algorithm (SACA). We investigate how these fragments are correlated in phase space and compare our model calculations with minimum spanning tree (MST) method. Our theoretical study highlights the importance of binding energy criterion in recognizing the fragment structure. MST method however, fails to break-up the spectator matter effectively and thus under-estimates the multiplicity of intermediate mass fragments (IMFs).Comment: 2 pages, 2 figure

Introduction Of Clusterization Principles In The Solution Of Problems Of Energy Efficiency And Ecological Safety Of The Existent Building Fund

The aim of the work is to introduce clusterization principles in the solution of problems of energy efficiency and ecological safety of the existent building fund. The material of the research is the process of modeling of energetically effective architecture-building clusters. In this sense it is topical and expedient to elaborate technologies and schemes, able to support making decisions as to the formation of energetically effective architecture-building clusters. The main attention is paid to the solution of infrastructure problems of energy saving of the architecture-building branch, connected with the absence of universal models, distinct algorithms of the formation of energy efficiency clusters and reliable instruments of their activity optimization. But realization of advantages of energy efficiency clusters is possible only at introducing effective mechanisms of the formation of a structure, able to provide a result, optimal by an energy efficiency criterion. The work offers a scheme of the formation process of such structure. The synthesis of models of energetically effective architecture-building clusters is based on principles of the systemic construction of geometric models and provides the imitative modeling of different development scenarios of synthesized clusters. At this stage of the research a function of making decisions as to the real cluster formation is left for experts. But an algorithm of the synthesis of models provides the formation of a knowledge base that will be in further a base of an “internal model” of the intellectual system of supporting decisions making, elaborated for modeling cluster structures. The scientific novelty of the work is in the elaboration of theoretical bases of the technology of coordinating the structure with object properties

Deuteron-deuteron collision at 160 MeV

The experiment was carried out using BINA detector at KVI in Groningen. For the first time an extensive data analysis of the data collected in back part of the detector is presented, where a clusterization method is utilized for angular and energy information. We also present differential cross-sections for the (dd$\rightarrow$dpn) breakup reaction within \textit{dp} quasi-free scattering limit and their comparison with first calculations based on Single Scattering Approximation (SSA) approach.Comment: 6 pages, 4 figures, presented at Jagiellonian Symposium 2015 in Krakow, PhD wor