Guidelines for negotiating social research in communities living adjacent to transboundary protected areas: Kruger National Park

The objective with these Guidelines is to assist local people and social researchers to negotiate equitable research agreements. This document lays out the purpose of the guidelines, provides some background information about the process that led to this document, and provides some general principles and practical guidelines for social research in local communities. The Guidelines have their origins in a long process of consultation, discussion and exchange between social researchers and local people, which took place in South Africa over a period of three years (2005-2008). It draws on the substantial experience of people living adjacent to the Kruger National Park with research and researchers; also on the collective experience of the informal network of researchers that participated in the development of the guidelines. Local people have experienced research in positive and negative ways. Some communities in the area adjacent to the Kruger National Park can justifiably feel over-exposed to researchers, while others feel that opportunities and insights potentially generated by research passes them by. Yet even these often feel that some guidelines are required to avoid duplication and negative engagement. Important is to mention that the engagement between social researchers and communities is not a matter of these two groups alone. Many facilitating, structurating stakeholders such as NGOs, parastatals conservation organisations and government organisations, are important influencing players in this engagement. Therefore, while the guidelines focus specifically on researcher-community interactions, these other players should not be forgotten and should themselves be aware of their effects in these interactions. The guidelines outline opportunities and constraints that arise when local people and social researchers engage one another. The guidelines are not prescriptive, but raise issues and suggest ways in which these can be dealt with

Variation by Geographic Scale in the Migration-Environment Association: Evidence from Rural South Africa

"Scholarly understanding of human migration's environmental dimensions has greatly advanced in the past several years, motivated in large part by public and policy dialogue around 'climate migrants'. The research presented here advances current demographic scholarship both through its substantive interpretations and conclusions, as well as its methodological approach. We examine temporary rural South African outmigration as related to household-level availability of proximate natural resources. Such 'natural capital' is central to livelihoods in the region, both for sustenance and as materials for market-bound products. The results demonstrate that the association between local environmental resource availability and outmigration is, in general, positive: households with higher levels of proximate natural capital are more likely to engage in temporary migration. In this way, the general findings support the 'environmental surplus' hypothesis that resource security provides a foundation from which households can invest in migration as a livelihood strategy. Such insight stands in contrast to popular dialogue, which tends to view migration as a last resort undertaken only by the most vulnerable households. As another important insight, our findings demonstrate important spatial variation, complicating attempts to generalize migration-environment findings across spatial scales. In our rural South African study site, the positive association between migration and proximate resources is actually highly localized, varying from strongly positive in some villages to strongly negative in others. We explore the socio-demographic factors underlying this 'operational scale sensitivity'. The cross-scale methodologies applied here offer nuance unavailable within more commonly used global regression models, although also introducing complexity that complicates story-telling and inhibits generalizability." (author's abstract

Quantifying the role of termite decomposition in a mesic savanna

DATA AVAILABILITY STATEMENT : The data that support the findings of this study are openly available in the Dryad Digital Repository: https://doi.org/10.5061/dryad.stqjq2c7t.Savanna systems are among the most sensitive to future climate and land-use change, yet we lack robust, direct quantifications of savanna carbon cycling. Together with fire, decomposition is the main process by which the carbon and nutrients are recycled and made available again to plants. Decomposition is largely mediated by microbes and soil invertebrates. Using a novel large-scale termite suppression experiment, we quantify, for the first time, the relative contribution of microbes, termites, and other invertebrates to the decomposition of wood (fresh native and dry non-native), dry dung, and grass in a mesic savanna. We found that termites were responsible for two thirds of the mass loss from dry wood and a third of the mass loss from fresh native wood, dry dung, and dry grass. Microbes were wholly responsible for the difference as there was no evidence of other invertebrates contributing to decomposition, even with fresh wood. Using multiple substrates in savanna decomposition studies is important where a mixture of contrasting life forms occur because both the rates of decomposition and the dominant agent varied considerably. In addition, including both a dry non-native and fresh native wood cast light on possible explanatory variables such as wood density, green-ness and the presence of bark, and the necessity of teasing these variables apart in future studies. Termites stand apart from all other insects in their impact on decomposition within savannas and should be acknowledged alongside microbes and fire as the primary agents of wood, grass, and dry dung turnover in global carbon models.Royal Society-FCDO African Capacity Building Initiative.http://www.wileyonlinelibrary.com/journal/btphj2024Zoology and EntomologySDG-13:Climate actionSDG-15:Life on lan

Immunoproteomics Analysis of the Murine Antibody Response to Vaccination with an Improved Francisella tularensis Live Vaccine Strain (LVS)

Background: Francisella tularensis subspecies tularensis is the causative agent of a spectrum of diseases collectively known as tularemia. An attenuated live vaccine strain (LVS) has been shown to be efficacious in humans, but safety concerns have prevented its licensure by the FDA. Recently, F. tularensis LVS has been produced under Current Good Manufacturing Practice (CGMP guidelines). Little is known about the immunogenicity of this new vaccine preparation in comparison with extensive studies conducted with laboratory passaged strains of LVS. Thus, the aim of the current work was to evaluate the repertoire of antibodies produced in mouse strains vaccinated with the new LVS vaccine preparation. Methodology/Principal Findings: In the current study, we used an immunoproteomics approach to examine the repertoire of antibodies induced following successful immunization of BALB/c versus unsuccessful vaccination of C57BL/6 mice with the new preparation of F. tularensis LVS. Successful vaccination of BALB/c mice elicited antibodies to nine identified proteins that were not recognized by antisera from vaccinated but unprotected C57BL/6 mice. In addition, the CGMP formulation of LVS stimulated a greater repertoire of antibodies following vaccination compared to vaccination with laboratory passaged ATCC LVS strain. A total of 15 immunoreactive proteins were identified in both studies, however, 16 immunoreactive proteins were uniquely reactive with sera from the new formulation of LVS. Conclusions/Significance: This is the first report characterising the antibody based immune response of the new formulation of LVS in the widely used murine model of tularemia. Using two mouse strains, we show that successfully vaccinated mice can be distinguished from unsuccessfully vaccinated mice based upon the repertoire of antibodies generated. This opens the door towards downselection of antigens for incorporation into tularemia subunit vaccines. In addition, this work also highlights differences in the humoral immune response to vaccination with the commonly used laboratory LVS strain and the new vaccine formulation of LVS.Peer reviewed: YesNRC publication: Ye

Democratization of ecosystem services—a radical approach for assessing nature’s benefits in the face of urbanization

OBJECTIVES : (1) To evaluate how ecosystem services may be utilized to either reinforce or fracture the planning and development practices that emerged from segregation and economic exclusion; (2) To survey the current state of ecosystem service assessments and synthesize a growing number of recommendations from the literature for renovating ecosystem service analyses. METHODS : Utilizing current maps of ecosystem service distribution in Bushbuckridge Local Municipality, South Africa, we considered how a democratized process of assessing ecosystem services will produce a more nuanced representation of diverse values in society and capture heterogeneity in ecosystem structure and function. RESULTS : We propose interventions for assessing ecosystem services that are inclusive of a broad range of stakeholders’ values and result in actual quantification of social and ecological processes. We demonstrate how to operationalize a pluralistic framework for ecosystem service assessments. CONCLUSION : A democratized approach to ecosystem service assessments is a reimagined path to rescuing a poorly implemented concept and designing and managing future socialecological systems that benefit people and support ecosystem integrity. It is the responsibility of scientists who do ecosystem services research to embrace more complex, pluralistic frameworks so that sound and inclusive scientific information is utilized in decision-making.The National Science Foundation under Grant No. RCN 1140070.https://www.tandfonline.com/loi/tehs20am2019Educational Psycholog

Exploring the options for fuelwood policies to support poverty alleviation policies: Evolving dimensions in South Africa

Access to secure and affordable energy supplies is widely acknowledged as a critical foundation for sustainable development; inadequate access exacerbates household poverty. In the developing world poor households are frequently reliant upon fuel wood for all or most of their energy needs. However, national poverty alleviation policies commonly do not consider fuelwood within their strategies, and similarly, energy policies rarely consider the poverty alleviation potential of a comprehensive fuelwood strategy. Consequently, synergies between poverty alleviation and energy policies—with fuelwood (and its derivates) as the bridge—are needed. This paper discusses this potential using South Africa as a case example. The current policy environment that either favours or hinders a linkage between the poverty and energy sectors and policy options and strategies available to develop such links, are discussed

Linking scales and disciplines : an interdisciplinary cross-scale approach to supporting climate-relevant ecosystem management

CITATION: Berger, C. et al. 2019. Linking scales and disciplines : an interdisciplinary cross-scale approach to supporting climate-relevant ecosystem management. Climatic Change, 156:139–150, doi:10.1007/s10584-019-02544-0.The original publication is available at https://www.springer.com/journal/10584Southern Africa is particularly sensitive to climate change, due to both ecological and socioeconomic factors, with rural land users among the most vulnerable groups. The provision of information to support climate-relevant decision-making requires an understanding of the projected impacts of change and complex feedbacks within the local ecosystems, as well as local demands on ecosystem services. In this paper, we address the limitation of current approaches for developing management relevant socio-ecological information on the projected impacts of climate change and human activities.We emphasise the need for linking disciplines and approaches by expounding the methodology followed in our two consecutive projects. These projects combine disciplines and levels of measurements from the leaf level (ecophysiology) to the local landscape level (flux measurements) and from the local household level (socio-economic surveys) to the regional level (remote sensing), feeding into a variety of models at multiple scales. Interdisciplinary, multi-scaled, and integrated socio-ecological approaches, as proposed here, are needed to compliment reductionist and linear, scalespecific approaches. Decision support systems are used to integrate and communicate the data and models to the local decision-makers.https://link.springer.com/article/10.1007/s10584-019-02544-0Publisher's versio

Sequence comparison of prefrontal cortical brain transcriptome from a tame and an aggressive silver fox (Vulpes vulpes)

<p>Abstract</p> <p>Background</p> <p>Two strains of the silver fox (<it>Vulpes vulpes</it>), with markedly different behavioral phenotypes, have been developed by long-term selection for behavior. Foxes from the tame strain exhibit friendly behavior towards humans, paralleling the sociability of canine puppies, whereas foxes from the aggressive strain are defensive and exhibit aggression to humans. To understand the genetic differences underlying these behavioral phenotypes fox-specific genomic resources are needed.</p> <p>Results</p> <p>cDNA from mRNA from pre-frontal cortex of a tame and an aggressive fox was sequenced using the Roche 454 FLX Titanium platform (> 2.5 million reads & 0.9 Gbase of tame fox sequence; >3.3 million reads & 1.2 Gbase of aggressive fox sequence). Over 80% of the fox reads were assembled into contigs. Mapping fox reads against the fox transcriptome assembly and the dog genome identified over 30,000 high confidence fox-specific SNPs. Fox transcripts for approximately 14,000 genes were identified using SwissProt and the dog RefSeq databases. An at least 2-fold expression difference between the two samples (p < 0.05) was observed for 335 genes, fewer than 3% of the total number of genes identified in the fox transcriptome.</p> <p>Conclusions</p> <p>Transcriptome sequencing significantly expanded genomic resources available for the fox, a species without a sequenced genome. In a very cost efficient manner this yielded a large number of fox-specific SNP markers for genetic studies and provided significant insights into the gene expression profile of the fox pre-frontal cortex; expression differences between the two fox samples; and a catalogue of potentially important gene-specific sequence variants. This result demonstrates the utility of this approach for developing genomic resources in species with limited genomic information.</p

Identification of Genes Contributing to the Virulence of Francisella tularensis SCHU S4 in a Mouse Intradermal Infection Model

Background: Francisella tularensis is a highly virulent human pathogen. The most virulent strains belong to subspecies tularensis and these strains cause a sometimes fatal disease. Despite an intense recent research effort, there is very limited information available that explains the unique features of subspecies tularensis strains that distinguish them from other F. tularensis strains and that explain their high virulence. Here we report the use of targeted mutagenesis to investigate the roles of various genes or pathways for the virulence of strain SCHU S4, the type strain of subspecies tularensis. Methodology/Principal Findings: The virulence of SCHU S4 mutants was assessed by following the outcome of infection after intradermal administration of graded doses of bacteria. By this route, the LD\u2085\u2080 of the SCHU S4 strain is one CFU. The virulence of 20 in-frame deletion mutants and 37 transposon mutants was assessed. A majority of the mutants did not show increased prolonged time to death, among them notably \u394pyrB and \u394recA. Of the remaining, mutations in six unique targets, tolC, rep, FTT0609, FTT1149c, ahpC, and hfq resulted in significantly prolonged time to death and mutations in nine targets, rplA, wbtI, iglB, iglD, purL, purF, ggt, kdtA, and glpX, led to marked attenuation with an LD\u2085\u2080 of >10\ub3 CFU. In fact, the latter seven mutants showed very marked attenuation with an LD\u2085\u2080 of 6510\u2077 CFU. Conclusions/Significance: The results demonstrate that the characterization of targeted mutants yielded important information about essential virulence determinants that will help to identify the so far little understood extreme virulence of F. tularensis subspecies tularensis.Peer reviewed: YesNRC publication: Ye