Chitinase and Fizz family members are a generalized feature of nematode infection with selective Upregulation of Ym1 and F10.1 by antigen-presenting cells

Ym1 and Fizz1 are secreted proteins that have been identified in a variety of Th2-mediated inflammatory settings. We originally found Ym1 and Fizz1 as highly expressed macrophage genes in a Brugia malayi infection model. Here, we show that their expression is a generalized feature of nematode infection and that they are induced at the site of infection with both the tissue nematode Litomosoides sigmodontis and the gastrointestinal nematode Nippostrongylus brasiliensis. At the sites of infection with N. brasiliensis, we also observed induction of other chitinase and Fizz family members (ChaFFs): acidic mammalian chitinase (AMCase) and Fizz2. The high expression of both Ym1 and AMCase in the lungs of infected mice suggests that abundant chitinase production is an important feature of Th2 immune responses in the lung. In addition to expression of ChaFFs in the tissues, Ym1 and Fizz1 expression was observed in the lymph nodes. Expression both in vitro and in vivo was restricted to antigen-presenting cells, with the highest expression in B cells and macrophages. ChaFFs may therefore be important effector or wound-repair molecules at the site of nematode infection, with potential regulatory roles for Ym1 and Fizz1 in the draining lymph nodes

Past, present, and future distribution of Afromontane rodents (Muridae: Otomys) reflect climate-change predicted biome changes

Climate change constitutes a potential threat to montane biodiversity, particularly in low-altitude, tropical mountains; however, few data exist for the Afromontane taxa. In South Africa, the temperate grassland and fynbos biomes are mostly associated with the Great Escarpment and the high-lying central plateau. Varying contractions of the grassland and fynbos biomes are predicted under different climate scenarios by 2050. Animal taxa adapted to these biomes should suffer similar range declines and can be used to independently test the vegetation models. We constructed MaxEnt models from 271 unique locality records for three species of montane and submontane vlei rats that are closely associated with grassland (Otomys auratus, Wroughton 1906), mesic savanna (Otomys angoniensis, Wroughton 1906), and fynbos (Otomys irroratus, Brants 1827) biomes in South Africa. Projected range shifts under the A2 emission scenario of the Intergovernmental Panel on Climate Change showed increases (O. angoniensis) and decreases (O. auratus) that closely mirrored those expected for the savanna and grassland biomes, respectively. Comparison of historical (from 90 years ago) and current occurrence data from a zone of sympatry in the tropical Soutpansberg Mountains (at 1250 m asl) showed complete replacement of the grassland-adapted rodent species (O. auratus) by the savanna-adapted species (O. angoniensis) due to historically documented changes from a grassland-dominated to thicket-dominated landscape

On the harmonic measure of stable processes

Using three hypergeometric identities, we evaluate the harmonic measure of a finite interval and of its complementary for a strictly stable real L{\'e}vy process. This gives a simple and unified proof of several results in the literature, old and recent. We also provide a full description of the corresponding Green functions. As a by-product, we compute the hitting probabilities of points and describe the non-negative harmonic functions for the stable process killed outside a finite interval

Regulatory T-cells in chronic graft-versus-host disease following extracorporeal photopheresis: correlation with skin and global organ responses, and ability to taper steroids

Background: Induction of immune tolerance by an increase in regulatory T (Treg) cells after extracorporeal photopheresis (ECP) is thought to contribute to how ECP exerts its therapeutic effect in patients with chronic graft-versus-host disease (cGvHD). We investigated whether percentages and absolute counts of Treg cells changed post-ECP, and examined correlation with response. Methods: Absolute counts and % of CD4+ T cells and Treg cells (CD4 + CD25 + FOXP3 + CD127dim/-) were evaluated using flow cytometry in 32 patients with cGvHD treated by ECP for a minimum of 3 months, and up to 12 months. CD4+ or Treg cells at baseline to 12 months post-ECP were compared with changes in skin disease scores or global organ involvement, or the ability to taper steroids, at 14, 28, and 56 weeks. Results: Regulatory T cells % increased significantly above any overall changes in CD4+ % at 6, 9, and 12 months post-ECP. There was no statistically significant association between Treg cells and skin or steroid response, whereas a larger increase in CD4+ count from baseline to 1 to 3 months corresponded to increased odds of being able to reduce steroid dose by 50% or greater at 14 weeks. Skin and global organ responders at 28 weeks had higher median Treg cell counts 3 months post-ECP than nonresponders, as did steroid responders at 56 weeks who were 12 months post-ECP. Conclusions: Regulatory T cell counts and % varied greatly among cGvHD patients, and the increase post-ECP was not significant until 6 months. No clear correlation was found between Treg cells and clinical improvement, suggesting that increases in Treg cell numbers and/or proportions are not driving the mechanism leading to a response after ECP

Facilitating the analysis of a UK national blood service supply chain using distributed simulation

In an attempt to investigate blood unit ordering policies, researchers have created a discrete-event model of the UK National Blood Service (NBS) supply chain in the Southampton area of the UK. The model has been created using Simul8, a commercial-off-the-shelf discrete-event simulation package (CSP). However, as more hospitals were added to the model, it was discovered that the length of time needed to perform a single simulation severely increased. It has been claimed that distributed simulation, a technique that uses the resources of many computers to execute a simulation model, can reduce simulation runtime. Further, an emerging standardized approach exists that supports distributed simulation with CSPs. These CSP Interoperability (CSPI) standards are compatible with the IEEE 1516 standard The High Level Architecture, the defacto interoperability standard for distributed simulation. To investigate if distributed simulation can reduce the execution time of NBS supply chain simulation, this paper presents experiences of creating a distributed version of the CSP Simul8 according to the CSPI/HLA standards. It shows that the distributed version of the simulation does indeed run faster when the model reaches a certain size. Further, we argue that understanding the relationship of model features is key to performance. This is illustrated by experimentation with two different protocols implementations (using Time Advance Request (TAR) and Next Event Request (NER)). Our contribution is therefore the demonstration that distributed simulation is a useful technique in the timely execution of supply chains of this type and that careful analysis of model features can further increase performance

The Zero-Removing Property and Lagrange-Type Interpolation Series

The classical Kramer sampling theorem, which provides a method for obtaining orthogonal sampling formulas, can be formulated in a more general nonorthogonal setting. In this setting, a challenging problem is to characterize the situations when the obtained nonorthogonal sampling formulas can be expressed as Lagrange-type interpolation series. In this article a necessary and sufficient condition is given in terms of the zero removing property. Roughly speaking, this property concerns the stability of the sampled functions on removing a finite number of their zeros

Assessment of atmospheric aerosols from two reanalysis products over Australia

Assessments of atmospheric aerosols from reanalysis are important for understanding uncertainty in model simulations, and ultimately predictions, such as for solar power or air quality forecasts and assessments. This study intercompares total aerosol optical depth (AOD) and dust AOD (DAOD) from two global reanalyses datasets, the European Centre for Medium-Range Weather Forecasts (ECMWF) Monitoring Atmospheric Composition and Climate (MACC) and the NASA Modern-Era Retrospective Analysis for Research-2 (MERRA-2). These are evaluated against AeroSpan (Aerosol characterisation via Sun photometry: Australian Network) ground observations which forms part of the Aerosol Robotic Network (AERONET) over the Australian continent for the 2002–2012 period. During dust storms, AeroSpan/AERONET AOD measurements were missing due to cloud screening. To overcome validation limitations in sun photometry for dust events, a nephelometer's scattering coefficient is qualitatively compared against reanalysis of DAOD at a key dust storm activation site, Tinga Tingana in South Australia (~200 km east of Lake Eyre). A specific extreme event that occurred in 2009 originating from the Lake Eyre basin, a major dust source covering one-sixth of Australia, was studied. The results show that MERRA-2 reanalysis overestimates monthly total AOD twice as much compared to AeroSpan/AERONET ground observations but seems better correlated against AeroSpan/AERONET than ECMWF/MACC. Mean data of MERRA-2 time series over 10 years provide lower DAOD values and lower dust aerosol estimates than ECMWF/MACC reanalysis (over the Lake Eyre basin with spatial averaging). Specifically at Tinga Tingana, the correlation from MERRA-2 (0.45 correlation) and ECMWF/MACC (0.43 correlation) against AeroSpan/AERONET's AOD were similar. Between MERRA-2 and ECMWF/MACC decade long daily gridded DAOD, the correlation coefficient was high at 0.73, again indicating similarity between the datasets. MERRA-2 total AOD correlation is significantly higher (by 0.26) against AeroSpan/AERONET than ECMWF/MACC. MERRA-2 also provides higher AOD values in extreme cases which may correspond to dust storms. During dust storms, a hybrid strategy using nephelometers and hourly reanalysis from MERRA-2 is able to identify dust storms better than AeroSpan/AERONET. Overall, this work can enable and inform better aerosol data assimilation into forecast models such as for solar energy, agriculture or air quality over Australia

Indestructibility of Vopenka's Principle

We show that Vopenka's Principle and Vopenka cardinals are indestructible under reverse Easton forcing iterations of increasingly directed-closed partial orders, without the need for any preparatory forcing. As a consequence, we are able to prove the relative consistency of these large cardinal axioms with a variety of statements known to be independent of ZFC, such as the generalised continuum hypothesis, the existence of a definable well-order of the universe, and the existence of morasses at many cardinals.Comment: 15 pages, submitted to Israel Journal of Mathematic

Current rectification by simple molecular quantum dots: an ab-initio study

We calculate a current rectification by molecules containing a conjugated molecular group sandwiched between two saturated (insulating) molecular groups of different length (molecular quantum dot) using an ab-initio non-equilibrium Green's function method. In particular, we study S-(CH2)m-C10H6-(CH2)n-S dithiol with Naphthalene as a conjugated central group. The rectification current ratio ~35 has been observed at m = 2 and n = 10, due to resonant tunneling through the molecular orbital (MO) closest to the electrode Fermi level (lowest unoccupied MO in the present case). The rectification is limited by interference of other conducting orbitals, but can be improved by e.g. adding an electron withdrawing group to the naphthalene.Comment: 8 pages, 9 figure