Sediment reworking by marine benthic species from the Gullmar Fjord (Western Sweden): Importance of faunal biovolume

In order to compare and quantify sediment reworking activities by different species/functional groups of macrofauna, a laboratory experiment was carried out with species from the Gullmarsfjord (Western Sweden). Monospecific communities of Amphiura filiformis, Echinocardium cordatum, Scalibregma inflatum and Abra nitida were introduced in experimental mesocosms, with identical densities (795 ind. m−2), for 10 days. Sediment reworking was studied by quantifying downward and upward movements of fluorescent inert tracers (luminophores). Luminophores with different colour were initially deposited both at the sediment surface and within the sediments. Population biomass and biovolume were also determined. Surface tracers reworking coefficients ranged from 0.6 to 2.2 cm2 y−1 and 0.9 to 4.1 y−1, respectively for the biodiffusive-like and non-local transports. Calculated biodiffusive-like coefficient was between 1.0 and 2.3 cm2 y−1 for the deep tracers. For both tracers, the E. cordatum population presented the highest reworking coefficients. Among the morphological and/or ethological parameters that could determine overall patterns of reworking and differences between species, results have shown a direct relationship between the apparent biodiffusive mixing and the biovolume of the individuals (Db=0.35 ⁎ Biovolume). This suggests that the biovolume of macrofauna may allow a rough estimate of the biodiffusive-like reworking intensity of particles deposited on the sediment surface

Consequences of artificial deepwater ventilation in the Bornholm Basin for oxygen conditions, cod reproduction and benthic biomass – a model study

We develop and use a circulation model to estimate hydrographical and ecological changes in the isolated basin water of the Bornholm Basin. By pumping well-oxygenated so-called winter water to the greatest depth, where it is forced to mix with the resident water, the rate of deepwater density reduction increases as well as the frequency of intrusions of new oxygen-rich deepwater. We show that pumping 1000 m(3) s(-1) should increase the rates of water exchange and oxygen supply by 2.5 and 3 times, respectively. The CRV cod reproduction volume), the volume of water in the isolated basin meeting the requirements for successful cod reproduction (S > 11, O-2 > 2 mL L-1), should every year be greater than 54 km(3), which is an immense improvement, since it has been much less in certain years. Anoxic bottoms should no longer occur in the basin, and hypoxic events will become rare. This should permit extensive colonization of fauna on the earlier periodically anoxic bottoms. Increased biomass of benthic fauna should also mean increased food supply to economically valuable demersal fish like cod and flatfish. In addition, re-oxygenation of the sediments should lead to increased phosphorus retention by the sediments

Benthos biomass and oxygen deficiency in the upwelling system off Peru

Data are presented on macrobenthic (≥ 1 mm) biomass and species composition, sulfur bacteria (Thioploca), demersal fish catches, organic content of sediment and dissolved oxygen at 65 stations (35-360 m) along the upwelling area off north Peru in 1980-1981. Oxygen concentration close to the bottom was high only down to about 20 m depth and at 20-700 m it was generally \u3c 0.8 ml l−1. Organic content of sediment increased significantly with water depth. Macrofauna were found at all stations with a general dominance of small polychaetes. Macrofaunal biomass showed a significant positive correlation with oxygen concentration; below 0.6 ml l−1 of oxygen biomass was impoverished. No correlation was found between biomass and depth. A mean macrofaunal biomass of 5.9 g 0.1 m−3 was recorded at depths \u3c 100 m and 3.1 g 0.1 m−3 at 100-200 m. Biomass was higher in the north compared with the south and showed a significant positive correlation with demersal fish catches. In contrast, Thioploca biomass showed a significant negative correlation both with macrobenthic biomass and demersal fish catches. From this study and previous work, we conclude that oxygen concentration was the dominant ecological factor determining macrobenthic biomass and species composition in the upwelling area off Peru and northern Chile. The benthic fauna living in low oxygen concentrations have probably developed this tolerance through evolutionary adaptation. Based on oxygen concentration and exposure, five zones in this upwelling area are characterized and their dominant benthic macrofauna documented

Effects of offshore wind farms on marine wildlife

Marine management plans over the world express high expectations to the development of offshore wind energy. This would obviously contribute to renewable energy production, but potential conflicts with other usages of the marine landscape, as well as conservation interests, are evident. The present study synthesizes the current state of understanding on the effects of offshore wind farms on marine wildlife, in order to identify general versus local conclusions in published studies. The results were translated into a generalized impact assessment for coastal waters in Sweden, which covers a range of salinity conditions from marine to nearly fresh waters. Hence, the conclusions are potentially applicable to marine planning situations in various aquatic ecosystems. The assessment considered impact with respect to temporal and spatial extent of the pressure, effect within each ecosystem component, and level of certainty. Research on the environmental effects of offshore wind farms has gone through a rapid maturation and learning process, with the bulk of knowledge being developed within the past ten years. The studies showed a high level of consensus with respect to the construction phase, indicating that potential impacts on marine life should be carefully considered in marine spatial planning. Potential impacts during the operational phase were more locally variable, and could be either negative or positive depending on biological conditions as well as prevailing management goals. There was paucity in studies on cumulative impacts and long-term effects on the food web, as well as on combined effects with other human activities, such as the fisheries. These aspects remain key open issues for a sustainable marine spatial planning

Benthic macro- and meiofauna in the Gulf of Bothnia (Northern Baltic)

Sisältää myös neljä muuta artikkelia: Henrik Sandler: Zinc and copper concentrations in benthic invertebrates considered in relation to concentrations in sediments and water in the Bothnian Sea (Northern Baltic) Kalle Purasjoki, Hilkka Viljamaa: Acanthocyclops robustus (Copepoda, Cyclopoida) in plankton of the Helsinki sea area, and a morphological comparison between A. robustus and A. vernalis Hilkka Arkimaa, Jouko Raitala: Landsat classification of the coastal water areas of the Bothnian Bay off Oulu. A pilot study Jouko Launiainen, Tuomas Laurila: Marine wind characteristic in the northern Baltic Se

Phylotastic! Making Tree-of-Life Knowledge Accessible, Reusable and Convenient

Scientists rarely reuse expert knowledge of phylogeny, in spite of years of effort to assemble a great "Tree of Life" (ToL). A notable exception involves the use of Phylomatic, which provides tools to generate custom phylogenies from a large, pre-computed, expert phylogeny of plant taxa. This suggests great potential for a more generalized system that, starting with a query consisting of a list of any known species, would rectify non-standard names, identify expert phylogenies containing the implicated taxa, prune away unneeded parts, and supply branch lengths and annotations, resulting in a custom phylogeny suited to the user's needs. Such a system could become a sustainable community resource if implemented as a distributed system of loosely coupled parts that interact through clearly defined interfaces. Results: With the aim of building such a "phylotastic" system, the NESCent Hackathons, Interoperability, Phylogenies (HIP) working group recruited 2 dozen scientist-programmers to a weeklong programming hackathon in June 2012. During the hackathon (and a three-month follow-up period), 5 teams produced designs, implementations, documentation, presentations, and tests including: (1) a generalized scheme for integrating components; (2) proof-of-concept pruners and controllers; (3) a meta-API for taxonomic name resolution services; (4) a system for storing, finding, and retrieving phylogenies using semantic web technologies for data exchange, storage, and querying; (5) an innovative new service, DateLife.org, which synthesizes pre-computed, time-calibrated phylogenies to assign ages to nodes; and (6) demonstration projects. These outcomes are accessible via a public code repository (GitHub.com), a website (www.phylotastic.org), and a server image. Conclusions: Approximately 9 person-months of effort (centered on a software development hackathon) resulted in the design and implementation of proof-of-concept software for 4 core phylotastic components, 3 controllers, and 3 end-user demonstration tools. While these products have substantial limitations, they suggest considerable potential for a distributed system that makes phylogenetic knowledge readily accessible in computable form. Widespread use of phylotastic systems will create an electronic marketplace for sharing phylogenetic knowledge that will spur innovation in other areas of the ToL enterprise, such as annotation of sources and methods and third-party methods of quality assessment.NESCent (the National Evolutionary Synthesis Center)NSF EF-0905606iPlant Collaborative (NSF) DBI-0735191Biodiversity Synthesis Center (BioSync) of the Encyclopedia of LifeComputer Science

Nutrient Enrichment Drives Gulf of Mexico Hypoxia

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/95312/1/eost16763.pd

Ecosystem functioning along gradients of increasing hypoxia and changing soft-sediment community types

Marine ecosystems world-wide are threatened by oxygen deficiency, with potential serious consequences for ecosystem functioning and the goods and services they provide. While the effects of hypoxia on benthic species diversity are well documented, the effects on ecosystem function have only rarely been assessed in real-world settings. To better understand the links between structural changes in macro- and meiofaunal communities, hypoxic stress and benthic ecosystem function (benthic nutrient fluxes, community metabolism), we sampled a total of 11 sites in Haystensfjord and Askerofjord (Swedish west coast) in late summer, coinciding with the largest extent and severity of seasonal hypoxia in the area. The sites spanned oxic to anoxic bottom water, and a corresponding gradient in faunal diversity. Intact sediment cores were incubated to measure fluxes of oxygen and nutrients (NO3-, NO2-, NH4+, PO43-, SiO4) across the sediment-water interface. Sediment profile imaging (SPI) footage was obtained from all sites to assess structural elements and the bioturbadon depth, and additional samples were collected to characterise sediment properties and macro- and meiofaunal community composition. Bottom-water O-2 concentration was the main driver of macrofauna communities, with highest abundance and biomass, as well as variability, at the sites with intermediate O-2 concentration. Meiofauna on the other hand was less sensitive to bottom-water O-2 concentration. Oxygen was the main driver of nutrient fluxes too, but macrofauna as well meiofauna were also significant predictors; DistLM analyses indicated that O-2 concentration, macrofaunal abundance or biomass, and meiofaunal abundance collectively explained 63%, 30% and 28% of the variation in sediment O-2 consumption, NH4+ flux and PO43+ flux, respectively. The study provides a step towards a more realistic understanding of the link between benthic fauna and ecosystem functioning, and the influence of disturbance on this relationship, which is important for management decisions aimed at protecting the dwindling biodiversity in the coastal zones around the world.Peer reviewe

Lying Behavior, Family Functioning and Adjustment in Early Adolescence

Item does not contain fulltextCommunication between children and parents has been the subject of several studies, examining the effects of, for example, disclosure and secrecy on adolescents' social relationships and adjustment. Less attention has paid to adolescent deception. We developed and tested a new instrument on lying behavior in a sample of 671 parent-adolescent couples. Analyses on the psychometric properties showed that this instrument had one principal component, and high internal consistency, item-total correlations and inter-item correlations. Lying was moderately associated with other indicators of parent-child communication, the quality of the parent-child relationship, and with parenting practices. In addition, frequent lying was moderately related to behavioral problems and emotional problems.10 p

Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient

Abstract Background Scientists rarely reuse expert knowledge of phylogeny, in spite of years of effort to assemble a great “Tree of Life” (ToL). A notable exception involves the use of Phylomatic, which provides tools to generate custom phylogenies from a large, pre-computed, expert phylogeny of plant taxa. This suggests great potential for a more generalized system that, starting with a query consisting of a list of any known species, would rectify non-standard names, identify expert phylogenies containing the implicated taxa, prune away unneeded parts, and supply branch lengths and annotations, resulting in a custom phylogeny suited to the user’s needs. Such a system could become a sustainable community resource if implemented as a distributed system of loosely coupled parts that interact through clearly defined interfaces. Results With the aim of building such a “phylotastic” system, the NESCent Hackathons, Interoperability, Phylogenies (HIP) working group recruited 2 dozen scientist-programmers to a weeklong programming hackathon in June 2012. During the hackathon (and a three-month follow-up period), 5 teams produced designs, implementations, documentation, presentations, and tests including: (1) a generalized scheme for integrating components; (2) proof-of-concept pruners and controllers; (3) a meta-API for taxonomic name resolution services; (4) a system for storing, finding, and retrieving phylogenies using semantic web technologies for data exchange, storage, and querying; (5) an innovative new service, DateLife.org, which synthesizes pre-computed, time-calibrated phylogenies to assign ages to nodes; and (6) demonstration projects. These outcomes are accessible via a public code repository (GitHub.com), a website ( http://www.phylotastic.org ), and a server image. Conclusions Approximately 9 person-months of effort (centered on a software development hackathon) resulted in the design and implementation of proof-of-concept software for 4 core phylotastic components, 3 controllers, and 3 end-user demonstration tools. While these products have substantial limitations, they suggest considerable potential for a distributed system that makes phylogenetic knowledge readily accessible in computable form. Widespread use of phylotastic systems will create an electronic marketplace for sharing phylogenetic knowledge that will spur innovation in other areas of the ToL enterprise, such as annotation of sources and methods and third-party methods of quality assessment.http://deepblue.lib.umich.edu/bitstream/2027.42/112888/1/12859_2013_Article_5897.pd