Brazilian Botanic Gardens

We argue that botanic gardens, as plant conservation focused institutions, have been tested in temperate regions that possess a relatively robust conservation infrastructure and a relatively low number of threatened species. The ability of the Brazilian botanic gardens to support plant conservation is especially challenging, given their small number relative to Brazil’s plant diversity and the increasing rate of habitat loss and plant endangerment. This study, the first for Brazil, assesses the conservation capacity of Brazilian botanic gardens. An assessment is made of the status of conservation facilities in Brazilian botanic gardens and the conservation status of their plant collections.This was based on a survey sent to thirty-six Brazilian botanic gardens in 2011– 2013 using information from the 2008 Brazilian Red List, and seven state conservation lists. The results identified a small percentage of threatened species (n =102/21 per cent) in ex situ collections of 22 botanic gardens and less than 10 per cent representation for each state red list. An assessment based on the updated Brazilian Red List (2014) showed that 425 threatened species were maintained in living collections of 18 botanic gardens. Despite the extensive size of some collections, the proportion of threatened species in the collections was found to be very low. Improvement in infrastructure, technical capacity, including horticultural skills, and development of policies and protocols will benecessary to increase the effectiveness of the collections for conservation aims

Medición y evaluación de valores en contenidos audiovisuales desde un abordaje interdisciplinar

El siguiente estudio interdisciplinar realizado por LAICOM (Laboratorio de Análisis Instrumental de la Comunicación, UAB), parte de la revisión del concepto de calidad comunicativa y formula un inventario de 26 valores para el ámbito iberoamericano, seleccionados aplicando el análisis de contenido a tres documentos de gran consenso social: "Carta de Derechos Humanos" (1948), "Constitución Federal de Brasil" (1988) y "Constitución Española" (1978). Los valores se han definido en sus dimensiones social, humana y educativa. Finalmente, se propone y valida un protocolo basado en test de recepción, capaz de medir y comparar la carga de valores transmitida en cualquier proceso de comunicación. El protocolo ha sido experimentado y corregido aplicándolo a 2 grupos de 10 expertos que evaluaron 4 spots publicitarios, con los que, luego, se organizaron sendos grupos de discusión.This interdisciplinary research, carried out by LAICOM reviews the concept quality communication and designs a 26 values glossary within the ibero-American context. Values are selected by applying a content analysis to 3 documents of feat social consensus: the "Human Rights Act" (1948), the "Federal Brazilian Constitution" (1988), and the "Spanish Constitution (1978); and are defined in three dimensions: human, social and education. Finally, a protocol is proposed and validated by a test of reception, which serves to measure and compare the load of values transmitted by any process of communication. This protocol is tested and corrected through two focus groups of communication experts (10 each), who first had to evaluate 4 TV ads and second discuss about results collected

The IPDGC/GP2 Hackathon - an open science event for training in data science, genomics, and collaboration using Parkinson’s disease data

Open science and collaboration are necessary to facilitate the advancement of Parkinson's disease (PD) research. Hackathons are collaborative events that bring together people with different skill sets and backgrounds to generate resources and creative solutions to problems. These events can be used as training and networking opportunities, thus we coordinated a virtual 3-day hackathon event, during which 49 early-career scientists from 12 countries built tools and pipelines with a focus on PD. Resources were created with the goal of helping scientists accelerate their own research by having access to the necessary code and tools. Each team was allocated one of nine different projects, each with a different goal. These included developing post-genome-wide association studies (GWAS) analysis pipelines, downstream analysis of genetic variation pipelines, and various visualization tools. Hackathons are a valuable approach to inspire creative thinking, supplement training in data science, and foster collaborative scientific relationships, which are foundational practices for early-career researchers. The resources generated can be used to accelerate research on the genetics of PD

The FANCM:p.Arg658* truncating variant is associated with risk of triple-negative breast cancer

Abstract: Breast cancer is a common disease partially caused by genetic risk factors. Germline pathogenic variants in DNA repair genes BRCA1, BRCA2, PALB2, ATM, and CHEK2 are associated with breast cancer risk. FANCM, which encodes for a DNA translocase, has been proposed as a breast cancer predisposition gene, with greater effects for the ER-negative and triple-negative breast cancer (TNBC) subtypes. We tested the three recurrent protein-truncating variants FANCM:p.Arg658*, p.Gln1701*, and p.Arg1931* for association with breast cancer risk in 67,112 cases, 53,766 controls, and 26,662 carriers of pathogenic variants of BRCA1 or BRCA2. These three variants were also studied functionally by measuring survival and chromosome fragility in FANCM−/− patient-derived immortalized fibroblasts treated with diepoxybutane or olaparib. We observed that FANCM:p.Arg658* was associated with increased risk of ER-negative disease and TNBC (OR = 2.44, P = 0.034 and OR = 3.79; P = 0.009, respectively). In a country-restricted analysis, we confirmed the associations detected for FANCM:p.Arg658* and found that also FANCM:p.Arg1931* was associated with ER-negative breast cancer risk (OR = 1.96; P = 0.006). The functional results indicated that all three variants were deleterious affecting cell survival and chromosome stability with FANCM:p.Arg658* causing more severe phenotypes. In conclusion, we confirmed that the two rare FANCM deleterious variants p.Arg658* and p.Arg1931* are risk factors for ER-negative and TNBC subtypes. Overall our data suggest that the effect of truncating variants on breast cancer risk may depend on their position in the gene. Cell sensitivity to olaparib exposure, identifies a possible therapeutic option to treat FANCM-associated tumors

Pervasive gaps in Amazonian ecological research

Biodiversity loss is one of the main challenges of our time,1,2 and attempts to address it require a clear un derstanding of how ecological communities respond to environmental change across time and space.3,4 While the increasing availability of global databases on ecological communities has advanced our knowledge of biodiversity sensitivity to environmental changes,5–7 vast areas of the tropics remain understudied.8–11 In the American tropics, Amazonia stands out as the world’s most diverse rainforest and the primary source of Neotropical biodiversity,12 but it remains among the least known forests in America and is often underrepre sented in biodiversity databases.13–15 To worsen this situation, human-induced modifications16,17 may elim inate pieces of the Amazon’s biodiversity puzzle before we can use them to understand how ecological com munities are responding. To increase generalization and applicability of biodiversity knowledge,18,19 it is thus crucial to reduce biases in ecological research, particularly in regions projected to face the most pronounced environmental changes. We integrate ecological community metadata of 7,694 sampling sites for multiple or ganism groups in a machine learning model framework to map the research probability across the Brazilian Amazonia, while identifying the region’s vulnerability to environmental change. 15%–18% of the most ne glected areas in ecological research are expected to experience severe climate or land use changes by 2050. This means that unless we take immediate action, we will not be able to establish their current status, much less monitor how it is changing and what is being lostinfo:eu-repo/semantics/publishedVersio

Catálogo de plantas e fungos do Brasil

"Parabenizo a todos os botânicos que contribuíram para completar o presente catálogo. O Brasil é o país que provavelmente possui a maior flora do mundo, portanto, a produção de uma lista completa dessa flora é uma extensa tarefa. Os coordenadores mobilizaram uma grande equipe de pessoas para compilar a lista, e é ótimo ver que este projeto, diferentemente do que se observa em outros países, foi coordenado no Brasil. Isto demonstra o alto nível e a capacidade da comunidade botânica brasileira que se desenvolveu rapidamente nas últimas décadas. Este catálogo, por ter sido preparado na sua maioria por especialistas dos grupos estudados, mostra quais espécies são correntemente aceitas pelos botânicos envolvidos. As espécies foram padronizadas por meio da citação de materiais-voucher, a maioria dos quais foi coletada por brasileiros e está alojada em herbários do Brasil. A informação a respeito da distribuição geográfica de cada espécie será extremamente útil para fins de conservação, e é interessante notar o número expressivo de espécies endêmicas do Brasil. Este catálogo certamente será utilizado por estudantes de diversas áreas envolvendo botânica, ecologia e outras, e tenho certeza de que a sua existência estimulará futuras pesquisas a respeito de plantas brasileiras e que a sua versão online o manterá atualizado. O desafio agora é conservar os muitos ecossistemas diferentes nos quais estas espécies ocorrem, para manter a diversidade botânica do país.

The IPDGC/GP2 Hackathon - an open science event for training in data science, genomics, and collaboration using Parkinson's disease data

Open science and collaboration are necessary to facilitate the advancement of Parkinson's disease (PD) research. Hackathons are collaborative events that bring together people with different skill sets and backgrounds to generate resources and creative solutions to problems. These events can be used as training and networking opportunities, thus we coordinated a virtual 3-day hackathon event, during which 49 early-career scientists from 12 countries built tools and pipelines with a focus on PD. Resources were created with the goal of helping scientists accelerate their own research by having access to the necessary code and tools. Each team was allocated one of nine different projects, each with a different goal. These included developing post-genome-wide association studies (GWAS) analysis pipelines, downstream analysis of genetic variation pipelines, and various visualization tools. Hackathons are a valuable approach to inspire creative thinking, supplement training in data science, and foster collaborative scientific relationships, which are foundational practices for early-career researchers. The resources generated can be used to accelerate research on the genetics of PD.This project was supported by the Global Parkinson’s Genetics Program (GP2). GP2 is funded by the Aligning Science Against Parkinson’s (ASAP) initiative and implemented by The Michael J. Fox Foundation for Parkinson’s Research (https://gp2.org).Open Access funding provided by the National Institutes of Health (NIH).This research was supported in part by the Intramural Research Program of the NIH, National Institute on Aging (NIA), National Institutes of Health, Department of Health and Human Services; project numbers ZO1 AG000535 and ZO1 AG000949, as well as the National Institute of Neurological Disorders and StrokePeer reviewe