341 research outputs found
The lowest singlet-triplet excitation energy of BN: a converged coupled cluster perspective
The notoriously small excitation energy of the BN
diatomic has been calculated using high-order coupled cluster methods.
Convergence has been established in both the 1-particle basis set and the
coupled cluster expansion. Explicit inclusion of connected quadruple
excitations is required for even semiquantitative agreement with
the limit value, while connected quintuple excitations still have
an effect of about 60 cm. Still higher excitations only account for
about 10 cm. Inclusion of inner-shell correlation further reduces
by about 60 cm at the CCSDT, and 85 cm at the CCSDTQ level. Our
best estimate, =18340 cm, is in excellent agreement with
earlier calculations and experiment, albeit with a smaller (and conservative)
uncertainty. The dissociation energy of BN() is =105.740.16
kcal/mol and =103.570.16 kcal/mol.Comment: J. Chem. Phys., in pres
W4 theory for computational thermochemistry: in pursuit of confident sub-kJ/mol predictions
In an attempt to improve on our earlier W3 theory [J. Chem. Phys. {\bf 120},
4129 (2004)] we consider such refinements as more accurate estimates for the
contribution of connected quadruple excitations (), inclusion of
connected quintuple excitations (), diagonal Born-Oppenheimer
corrections (DBOC), and improved basis set extrapolation procedures. Revised
experimental data for validation purposes were obtained from the latest version
of the ATcT (Active Thermochemical Tables) Thermochemical Network. We found
that the CCSDTQCCSDT(Q) difference converges quite rapidly with the basis
set, and that the formula
1.10[CCSDT(Q)/cc-pVTZ+CCSDTQ/cc-pVDZCCSDT(Q)/cc-pVDZ] offers a very reliable
as well as fairly cost-effective estimate of the basis set limit
contribution. The largest contribution found in the present work is
on the order of 0.5 kcal/mol (for ozone). DBOC corrections are significant at
the 0.1 kcal/mol level in hydride systems. . Based on the accumulated
experience, a new computational thermochemistry protocol for first-and
second-row main-group systems, to be known as W4 theory, is proposed. Our W4
atomization energies for a number of key species are in excellent agreement
(better than 0.1 kcal/mol on average, 95% confidence intervals narrower than 1
kJ/mol) with the latest experimental data obtained from Active Thermochemical
Tables. A simple {\em a priori} estimate for the importance of post-CCSD(T)
correlation contributions (and hence a pessimistic estimate for the error in a
W2-type calculation) is proposed.Comment: J. Chem. Phys., in press; electronic supporting information available
at http://theochem.weizmann.ac.il/web/papers/w4.htm
Performance of ab initio and density functional methods for conformational equilibria of CnH2n+2 alkane isomers (n=2-8)
Conformational energies of n-butane, n-pentane, and n-hexane have been
calculated at the CCSD(T) level and at or near the basis set limit.
Post-CCSD(T) contribution were considered and found to be unimportant. The data
thus obtained were used to assess the performance of a variety of density
functional methods. Double-hybrid functionals like B2GP-PLYP and B2K-PLYP,
especially with a small Grimme-type empirical dispersion correction, are
capable of rendering conformational energies of CCSD(T) quality. These were
then used as a `secondary standard' for a larger sample of alkanes, including
isopentane and the branched hexanes as well as key isomers of heptane and
octane. Popular DFT functionals like B3LYP, B3PW91, BLYP, PBE, and PBE0 tend to
overestimate conformer energies without dispersion correction, while the M06
family severely underestimates GG interaction energies. Grimme-type dispersion
corrections for these overcorrect and lead to qualitatively wrong conformer
orderings. All of these functionals also exhibit deficiencies in the conformer
geometries, particularly the backbone torsion angles. The PW6B95 and, to a
lesser extent, BMK functionals are relatively free of these deficiencies.
Performance of these methods is further investigated to derive conformer
ensemble corrections to the enthalpy function, , and the Gibbs
energy function, , of these alkanes. While
is only moderately sensitive to the level of theory, exhibits more pronounced sensitivity. Once again, double hybrids
acquit themselves very well.Comment: J. Phys. Chem. A, revised [Walter Thiel festschrift
Covalency and ionicity do not oppose each other : relationship between Si-O bond character and basicity of siloxanes
Covalency and ionicity are orthogonal rather than antipodal concepts. We demonstrate for the case of siloxane systems [R3Si-(O-SiR2)(n)-O-SiR3] that both covalency and ionicity of the Si-O bonds impact on the basicity of the Si-O-Si linkage. The relationship between the siloxane basicity and the Si-O bond character has been under debate since previous studies have presented conflicting explanations. It has been shown with natural bond orbital methods that increased hyperconjugative interactions of LP(O)->sigma*(Si-R) type, that is, increased orbital overlap and hence covalency, are responsible for the low siloxane basicity at large Si-O-Si angles. On the other hand, increased ionicity towards larger Si-O-Si angles has been revealed with real-space bonding indicators. To resolve this ostensible contradiction, we perform a complementary bonding analysis, which combines orbital-space, real-space, and bond-index considerations. We analyze the isolated disiloxane molecule H3SiOSiH3 with varying Si-O-Si angles, and n-membered cyclic siloxane systems Si2H4O(CH2)(n-3). All methods from quite different realms show that both covalent and ionic interactions increase simultaneously towards larger Si-O-Si angles. In addition, we present highly accurate absolute hydrogen-bond interaction energies of the investigated siloxane molecules with water and silanol as donors. It is found that intermolecular hydrogen bonding is significant at small Si-O-Si angles and weakens as the Si-O-Si angle increases until no stable hydrogen-bond complexes are obtained beyond phi(SiOSi) = 168 degrees, angles typically displayed by minerals or polymers. The maximum hydrogen-bond interaction energy, which is obtained at an angle of 105 degrees, is 11.05 kJ mol(-1) for the siloxane-water complex and 18.40 kJ mol(-1) for the siloxane-silanol complex
Benchmark thermochemistry of the C_nH_{2n+2} alkane isomers (n=2--8) and performance of DFT and composite ab initio methods for dispersion-driven isomeric equilibria
The thermochemistry of linear and branched alkanes with up to eight carbons
has been reexamined by means of W4, W3.2lite and W1h theories. `Quasi-W4'
atomization energies have been obtained via isodesmic and hypohomodesmotic
reactions. Our best atomization energies at 0 K (in kcal/mol) are: 1220.04
n-butane, 1497.01 n-pentane, 1774.15 n-hexane, 2051.17 n-heptane, 2328.30
n-octane, 1221.73 isobutane, 1498.27 isopentane, 1501.01 neopentane, 1775.22
isohexane, 1774.61 3-methylpentane, 1775.67 diisopropyl, 1777.27 neohexane,
2052.43 isoheptane, 2054.41 neoheptane, 2330.67 isooctane, and 2330.81
hexamethylethane. Our best estimates for are: -30.00
n-butane, -34.84 n-pentane, -39.84 n-hexane, -44.74 n-heptane, -49.71 n-octane,
-32.01 isobutane, -36.49 isopentane, -39.69 neopentane, -41.42 isohexane,
-40.72 3-methylpentane, -42.08 diisopropyl, -43.77 neohexane, -46.43
isoheptane, -48.84 neoheptane, -53.29 isooctane, and -53.68 hexamethylethane.
These are in excellent agreement (typically better than 1 kJ/mol) with the
experimental heats of formation at 298 K obtained from the CCCBDB and/or NIST
Chemistry WebBook databases. However, at 0 K a large discrepancy between theory
and experiment (1.1 kcal/mol) is observed for only neopentane. This deviation
is mainly due to the erroneous heat content function for neopentane used in
calculating the 0 K CCCBDB value. The thermochemistry of these systems,
especially of the larger alkanes, is an extremely difficult test for density
functional methods. A posteriori corrections for dispersion are essential.
Particularly for the atomization energies, the B2GP-PLYP and B2K-PLYP
double-hybrids, and the PW6B95 hybrid-meta GGA clearly outperform other DFT
functionals.Comment: (J. Phys. Chem. A, in press
A Halomethane thermochemical network from iPEPICO experiments and quantum chemical calculations
Internal energy selected halomethane cations CH3Cl+, CH2Cl2+, CHCl3+, CH3F+, CH2F2+, CHClF2+ and CBrClF2+ were prepared by vacuum ultraviolet photoionization, and their lowest energy dissociation channel studied using imaging photoelectron photoion coincidence spectroscopy (iPEPICO). This channel involves hydrogen atom loss for CH3F+, CH2F2+ and CH3Cl+, chlorine atom loss for CH2Cl2+, CHCl3+ and CHClF2+, and bromine atom loss for CBrClF2+. Accurate 0 K appearance energies, in conjunction with ab initio isodesmic and halogen exchange reaction energies, establish a thermochemical network, which is optimized to update and confirm the enthalpies of formation of the sample molecules and their dissociative photoionization products. The ground electronic states of CHCl3+, CHClF2+ and CBrClF2+ do not confirm to the deep well assumption, and the experimental breakdown curve deviates from the deep well model at low energies. Breakdown curve analysis of such shallow well systems supplies a satisfactorily succinct route to the adiabatic ionization energy of the parent molecule, particularly if the threshold photoelectron spectrum is not resolved and a purely computational route is unfeasible. The ionization energies have been found to be 11.47 ± 0.01 eV, 12.30 ± 0.02 eV and 11.23 ± 0.03 eV for CHCl3, CHClF2 and CBrClF2, respectively. The updated 0 K enthalpies of formation, ∆fHo0K(g) for the ions CH2F+, CHF2+, CHCl2+, CCl3+, CCl2F+ and CClF2+ have been derived to be 844.4 ± 2.1, 601.6 ± 2.7, 890.3 ± 2.2, 849.8 ± 3.2, 701.2 ± 3.3 and 552.2 ± 3.4 kJ mol–1, respectively. The ∆fHo0K(g) values for the neutrals CCl4, CBrClF2, CClF3, CCl2F2 and CCl3F and have been determined to be –94.0 ± 3.2, –446.6 ± 2.7, –702.1 ± 3.5, –487.8 ± 3.4 and –285.2 ± 3.2 kJ mol–1, respectively
Correct quantum chemistry in a minimal basis from effective Hamiltonians
We describe how to create ab-initio effective Hamiltonians that qualitatively
describe correct chemistry even when used with a minimal basis. The
Hamiltonians are obtained by folding correlation down from a large parent basis
into a small, or minimal, target basis, using the machinery of canonical
transformations. We demonstrate the quality of these effective Hamiltonians to
correctly capture a wide range of excited states in water, nitrogen, and
ethylene, and to describe ground and excited state bond-breaking in nitrogen
and the chromium dimer, all in small or minimal basis sets
Global hybrids from the semiclassical atom theory satisfying the local density linear response
We propose global hybrid approximations of the exchange-correlation (XC)
energy functional which reproduce well the modified fourth-order gradient
expansion of the exchange energy in the semiclassical limit of many-electron
neutral atoms and recover the full local density approximation (LDA) linear
response. These XC functionals represent the hybrid versions of the APBE
functional [Phys. Rev. Lett. 106, 186406, (2011)] yet employing an additional
correlation functional which uses the localization concept of the correlation
energy density to improve the compatibility with the Hartree-Fock exchange as
well as the coupling-constant-resolved XC potential energy. Broad energetical
and structural testings, including thermochemistry and geometry, transition
metal complexes, non-covalent interactions, gold clusters and small
gold-molecule interfaces, as well as an analysis of the hybrid parameters, show
that our construction is quite robust. In particular, our testing shows that
the resulting hybrid, including 20\% of Hartree-Fock exchange and named hAPBE,
performs remarkably well for a broad palette of systems and properties, being
generally better than popular hybrids (PBE0 and B3LYP). Semi-empirical
dispersion corrections are also provided.Comment: 12 pages, 4 figure
Dendrimer-Based Fluorescent Indicators: In Vitro and In Vivo Applications
BACKGROUND: The development of fluorescent proteins and synthetic molecules whose fluorescence properties are controlled by the environment makes it possible to monitor physiological and pathological events in living systems with minimal perturbation. A large number of small organic dyes are available and routinely used to measure biologically relevant parameters. Unfortunately their application is hindered by a number of limitations stemming from the use of these small molecules in the biological environment. PRINCIPAL FINDINGS: We present a novel dendrimer-based architecture leading to multifunctional sensing elements that can overcome many of these problems. Applications in vitro, in living cells and in vivo are reported. In particular, we image for the first time extracellular pH in the brain in a mouse epilepsy model. CONCLUSION: We believe that the proposed architecture can represent a useful and novel tool in fluorescence imaging that can be widely applied in conjunction with a broad range of sensing dyes and experimental setups
- …