Haemoglobin and size dependent constraints on swimbladder inflation in fish larvae

In developmental studies of fish species (especially physostomians) it could be demonstrated, that the lack of haemoglobin during larval and juvenile stages is a relatively common phenomenon. Generally it is linked with body translucency. In representatives of the families Galaxiidae, Osmeridae and Clupeidae, partly reared, partly observed immediately after being caught in the wild, it turned out, that this condition coincides with a considerable delay in swimbladder inflation. To determine the moment of its first inflation, larvae placed in a hermetic chamber were observed under a dissecting microscope. While lowering the pressure, the expanding swimbladder showed whether or not its content is really gaseous. The reason postulated to be responsible for the delayed inflation is that larvae lacking haemoglobin do not have the possibility of oxygen transport to their buoyancy organ by means of the blood. Apart of this, capillarity force calculations and body force estimations show that with decreasing size the constraints linked with surface tension increase overproportionally. While in larger sized larvae like trout we could demonstrate inflation by swallowing air, in species with small larvae this was not the case. Below a certain size, even in physostomians, the ductus pneumaticus is no alternative to the blood pathway for swimbladder inflation

Pressure Effect and Specific Heat of RBa2Cu3Ox at Distinct Charge Carrier Concentrations: Possible Influence of Stripes

In YBa2Cu3Ox, distinct features are found in the pressure dependence of the transition temperature, dTc/dp, and in DeltaCp*Tc, where DeltaCp is the jump in the specific heat at Tc: dTc/dp becomes zero when DeltaCp*Tc is maximal, whereas dTc/dp has a peak at lower oxygen contents where DeltaCp*Tc vanishes. Substituting Nd for Y and doping with Ca leads to a shift of these specific oxygen contents, since oxygen order and hole doping by Ca influences the hole content nh in the CuO2 planes. Calculating nh from the parabolic Tc(nh) behavior, the features coalesce for all samples at nh=0.11 and nh=0.175, irrespective of substitution and doping. Hence, this behavior seems to reflect an intrinsic property of the CuO2 planes. Analyzing our results we obtain different mechanisms in three doping regions: Tc changes in the optimally doped and overdoped region are mainly caused by charge transfer. In the slightly underdoped region an increasing contribution to dTc/dp is obtained when well ordered CuO chain fragments serve as pinning centers for stripes. This behavior is supported by our results on Zn doped NdBa2Cu3Ox and is responsible for the well known dTc/dp peak observed in YBa2Cu3Ox at x=6.7. Going to a hole content below nh=0.11 our results point to a crossover from an underdoped superconductor to a doped antiferromagnet, changing completely the physics of these materials.Comment: 6 pages, 5 figures Proccedings of the 'Stripes 2000' Conference, Rome (2000

Application of FT-IR Spectroscopy for Fingerprinting of Zymomonas mobilis Respiratory Mutants

Abstract. Z. mobilis ATCC 29191 and its respiratory knockout mutants, kat-, ndh-, cytB-, and cydB-, were grown under anaerobic and aerobic conditions. FT-IR spectroscopy was used to study the variations of the cell macromolecular composition. Quantitative analysis showed that the concentration ratios-nucleic acids to lipids, for Z. mobilis parent strain, kat-, ndh-, cytB-, and cydB-strains, clearly distinguished Z. mobilis parent strain from its mutant derivatives and corresponded fairly well to the expected degree of biochemical similarity between the strains. Two different FT-IR-spectra hierarchical cluster analysis (HCA) methods were created to differentiate Z. mobilis parent strain and respiratory knockout mutant strains. HCA based on discriminative spectra ranges of carbohydrates, nucleic acids, and lipids allowed to evaluate the influence of growth environment (aeration, growth phase) on the macromolecular composition of cells and differentiate the strains. HCA based on IR spectra of inoculums, in a diagnostic region including the characteristic nucleic acid vibration modes, clearly discriminated the strains under study. Thus it was shown that FT-IR spectroscopy can distinguish various alterations of Z. mobilis respiratory metabolism by HCA of biomass spectra

Characterization of Human Immunodeficiency Virus Type 1 (HIV-1) Diversity and Tropism in 145 Patients With Primary HIV-1 Infection

Viral diversity during primary HIV-1 infection (PHI) relating to transmission mode, HIV-1 subtypes, and viral tropism was revisited. Varying mucosal barriers were not associated with differences in diversities of founder populations. CXCR4-using viruses are present during PHI but remain exceptional case

FIBRE OPTICAL COUPLER SIMULATION BY COMSOL MULTIPHYSICS SOFTWARE

Funding: The research has been supported by the European Regional Development Fund project No.1.1.1.1/18/A/068. The Institute of Solid State Physics, University of Latvia as a Center of Excellence has received funding from the European Union’s Horizon 2020 Framework Programme H2020-WIDESPREAD-01-2016-2017-TeamingPhase2 under grant agreement No. 739508, project CAMART2.The paper presents a simulation model developed for a special optical coupler intended for coupling radiation from signal and pump sources used for the realization of cladding-pumped doped fibre amplifiers. The model is developed in COMSOL Multiphysics and used to assess the pumping efficiency for different side pumping angles and different numbers of electromagnetic modes. The obtained results show that the highest pumping efficiency, above 75 %, is achieved for 5–14 modes when two fibres representing the pump source and the signal source form a 10-degree angle between their central axes. The search for the optimal number of modes corresponds to the development trend in optical coupler technology where the multimode pumping by light-emitting diode (LED) replaces the classical scheme with a single-mode pumping by a laser diode (LD). © 2022 Sciendo. All rights reserved. --//-- This is an open access article Elsts E., Supe A., Spolitis S., Zakis K., Olonkins S., Udalcovs A., Murnieks R., Senkans U., Prigunovs D., Gegere L., Draguns K., Lukosevics I., Ozolins O., Grube J., Bobrovs V. FIBRE OPTICAL COUPLER SIMULATION BY COMSOL MULTIPHYSICS SOFTWARE (2022) Latvian Journal of Physics and Technical Sciences, 59 (5), pp. 3 - 14, DOI: 10.2478/lpts-2022-0036 published under the CC BY-NC-ND 4.0 licence.ERDF No.1.1.1.1/18/A/068; The Institute of Solid State Physics, University of Latvia as a Center of Excellence has received funding from the European Union’s Horizon 2020 Framework Programme H2020-WIDESPREAD-01-2016-2017-TeamingPhase2 under grant agreement No. 739508, project CAMART2

Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi

DNA phylogenetic comparisons have shown that morphology-based species recognition often underestimates fungal diversity. Therefore, the need for accurate DNA sequence data, tied to both correct taxonomic names and clearly annotated specimen data, has never been greater. Furthermore, the growing number of molecular ecology and microbiome projects using high-throughput sequencing require fast and effective methods for en masse species assignments. In this article, we focus on selecting and re-annotating a set of marker reference sequences that represent each currently accepted order of Fungi. The particular focus is on sequences from the internal transcribed spacer region in the nuclear ribosomal cistron, derived from type specimens and/or ex-type cultures. Re-annotated and verified sequences were deposited in a curated public database at the National Center for Biotechnology Information (NCBI), namely the RefSeq Targeted Loci (RTL) database, and will be visible during routine sequence similarity searches with NR_prefixed accession numbers. A set of standards and protocols is proposed to improve the data quality of new sequences, and we suggest how type and other reference sequences can be used to improve identification of Fungi

Discovery of very-high-energy emission from RGB J2243+203 and derivation of its redshift upper limit

Very-high-energy (VHE; $>$ 100 GeV) gamma-ray emission from the blazar RGB J2243+203 was discovered with the VERITAS Cherenkov telescope array, during the period between 21 and 24 December 2014. The VERITAS energy spectrum from this source can be fit by a power law with a photon index of $4.6 \pm 0.5$, and a flux normalization at 0.15 TeV of $(6.3 \pm 1.1) \times 10^{-10} ~ \textrm{cm}^{-2} \textrm{s}^{-1} \textrm{TeV}^{-1}$. The integrated \textit{Fermi}-LAT flux from 1 GeV to 100 GeV during the VERITAS detection is $(4.1 \pm 0.8) \times 10^{\textrm{-8}} ~\textrm{cm}^{\textrm{-2}}\textrm{s}^{\textrm{-1}}$, which is an order of magnitude larger than the four-year-averaged flux in the same energy range reported in the 3FGL catalog, ($4.0 \pm 0.1 \times 10^{\textrm{-9}} ~ \textrm{cm}^{\textrm{-2}}\textrm{s}^{\textrm{-1}}$). The detection with VERITAS triggered observations in the X-ray band with the \textit{Swift}-XRT. However, due to scheduling constraints \textit{Swift}-XRT observations were performed 67 hours after the VERITAS detection, not simultaneous with the VERITAS observations. The observed X-ray energy spectrum between 2 keV and 10 keV can be fitted with a power-law with a spectral index of $2.7 \pm 0.2$, and the integrated photon flux in the same energy band is $(3.6 \pm 0.6) \times 10^{-13} ~\textrm{cm}^{-2} \textrm{s}^{-1}$. EBL model-dependent upper limits of the blazar redshift have been derived. Depending on the EBL model used, the upper limit varies in the range from z $<~0.9$ to z $<~1.1$

The Polarised Valence Quark Distribution from semi-inclusive DIS

The semi-inclusive difference asymmetry A^{h^{+}-h^{-}} for hadrons of opposite charge has been measured by the COMPASS experiment at CERN. The data were collected in the years 2002-2004 using a 160 GeV polarised muon beam scattered off a large polarised ^6LiD target and cover the range 0.006 < x < 0.7 and 1 < Q^2 < 100 (GeV/c)^2. In leading order QCD (LO) the asymmetry A_d^{h^{+}-h^{-}} measures the valence quark polarisation and provides an evaluation of the first moment of Delta u_v + Delta d_v which is found to be equal to 0.40 +- 0.07 (stat.) +- 0.05 (syst.) over the measured range of x at Q^2 = 10 (GeV/c)^2. When combined with the first moment of g_1^d previously measured on the same data, this result favours a non-symmetric polarisation of light quarks Delta u-bar = - Delta d-bar at a confidence level of two standard deviations, in contrast to the often assumed symmetric scenario Delta u-bar = Delta d-bar = Delta s-bar = Delta s.Comment: 7 pages, 3 figures, COMPASS, revised: details added, author list update

VERITAS and Multiwavelength Observations of the BL Lacertae Object 1ES 1741+196

We present results from multiwavelength observations of the BL Lacertae object 1ES 1741+196, including results in the very-high-energy $\gamma$-ray regime using the Very Energetic Radiation Imaging Telescope Array System (VERITAS). The VERITAS time-averaged spectrum, measured above 180 GeV, is well-modelled by a power law with a spectral index of $2.7\pm0.7_{\mathrm{stat}}\pm0.2_{\mathrm{syst}}$. The integral flux above 180 GeV is $(3.9\pm0.8_{\mathrm{stat}}\pm1.0_{\mathrm{syst}})\times 10^{-8}$ m$^{-2}$ s$^{-1}$, corresponding to 1.6% of the Crab Nebula flux on average. The multiwavelength spectral energy distribution of the source suggests that 1ES 1741+196 is an extreme-high-frequency-peaked BL Lacertae object. The observations analysed in this paper extend over a period of six years, during which time no strong flares were observed in any band. This analysis is therefore one of the few characterizations of a blazar in a non-flaring state.Comment: 8 pages, 5 figures. Accepted for publication in MNRA

Spin alignment and violation of the OZI rule in exclusive ω\omega and ϕ\phi production in pp collisions

Exclusive production of the isoscalar vector mesons $\omega$ and $\phi$ is measured with a 190 GeV$/c$ proton beam impinging on a liquid hydrogen target. Cross section ratios are determined in three intervals of the Feynman variable $x_{F}$ of the fast proton. A significant violation of the OZI rule is found, confirming earlier findings. Its kinematic dependence on $x_{F}$ and on the invariant mass $M_{p\mathrm{V}}$ of the system formed by fast proton $p_\mathrm{fast}$ and vector meson $V$ is discussed in terms of diffractive production of $p_\mathrm{fast}V$ resonances in competition with central production. The measurement of the spin density matrix element $\rho_{00}$ of the vector mesons in different selected reference frames provides another handle to distinguish the contributions of these two major reaction types. Again, dependences of the alignment on $x_{F}$ and on $M_{p\mathrm{V}}$ are found. Most of the observations can be traced back to the existence of several excited baryon states contributing to $\omega$ production which are absent in the case of the $\phi$ meson. Removing the low-mass $M_{p\mathrm{V}}$ resonant region, the OZI rule is found to be violated by a factor of eight, independently of $x_\mathrm{F}$.Comment: 23 pages, 13 figures and 5 table