SWAS and Arecibo observations of H2O and OH in a diffuse cloud along the line-of-sight to W51

Observations of W51 with the Submillimeter Wave Astronomy Satellite (SWAS) have yielded the first detection of water vapor in a diffuse molecular cloud. The water vapor lies in a foreground cloud that gives rise to an absorption feature at an LSR velocity of 6 km/s. The inferred H2O column density is 2.5E+13 cm-2. Observations with the Arecibo radio telescope of hydroxyl molecules at ten positions in W51 imply an OH column density of 8E+13 cm-2 in the same diffuse cloud. The observed H2O/OH ratio of ~ 0.3 is significantly larger than an upper limit derived previously from ultraviolet observations of the similar diffuse molecular cloud lying in front of HD 154368. The observed variation in H2O/OH likely points to the presence in one or both of these clouds of a warm (T > 400) gas component in which neutral-neutral reactions are important sources of OH and/or H2O.Comment: 15 pages (AASTeX) including 4 (eps) figures. To appear in the Astrophysical Journa

Submillimeter Wave Astronomy Satellite mapping observations of water vapor around Sagittarius B2

Observations of the 1(10)-1(01) 556.936 GHz transition of ortho-water with the Submillimeter Wave Astronomy Satellite (SWAS) have revealed the presence of widespread emission and absorption by water vapor around the strong submillimeter continuum source Sagittarius B2. An incompletely-sampled spectral line map of a region of size 26 x 19 arcmin around Sgr B2 reveals three noteworthy features. First, absorption by foreground water vapor is detectable at local standard-of-rest (LSR) velocities in the range -100 to 0 km/s at almost every observed position. Second, spatially-extended emission by water is detectable at LSR velocities in the range 80 to 120 km/s at almost every observed position. This emission is attributable to the 180-pc molecular ring identified from previous observations of CO. The typical peak antenna temperature of 0.075 K for this component implies a typical water abundance of 1.2E-6 to 8E-6 relative to H2. Third, strong absorption by water is observed within 5 arcmin of Sgr B2 at LSR velocities in the range 60 to 82 km/s. An analysis of this absorption yields a H2O abundance ~ 2E-7 to 4E-7 relative to H2 if the absorbing water vapor is located within the core of Sgr B2 itself; or, alternatively, a water column density ~ 2.5E+16 to 4E+16 per cm2 if the water absorption originates in the warm, foreground layer of gas proposed previously as the origin of ammonia absorption observed toward Sgr B2.Comment: 29 pages (AASTeX), including 9 postscript figures, to appear in the Astrophysical Journa

Herschel Search for O_2 toward the Orion Bar

We report the results of a search for molecular oxygen (O_2) toward the Orion Bar, a prominent photodissociation region at the southern edge of the H II region created by the luminous Trapezium stars. We observed the spectral region around the frequency of the O_2 NJ = 33-12 transition at 487 GHz and the 5_(4)-3_(4) transition at 774 GHz using the Heterodyne Instrument for the Far-Infrared on the Herschel Space Observatory. Neither line was detected, but the 3σ upper limits established here translate to a total line-of-sight O2 column density <1.5 × 10^(16) cm^(–2) for an emitting region whose temperature is between 30 K and 250 K, or <1 × 10^(16) cm^(–2) if the O_2 emitting region is primarily at a temperature of ≲100 K. Because the Orion Bar is oriented nearly edge-on relative to our line of sight, the observed column density is enhanced by a factor estimated to be between 4 and 20 relative to the face-on value. Our upper limits imply that the face-on O_2 column density is less than 4 × 10^(15) cm^(–2), a value that is below, and possibly well below, model predictions for gas with a density of 10^(4)-10^(5) cm^(–3) exposed to a far-ultraviolet flux 10^4 times the local value, conditions inferred from previous observations of the Orion Bar. The discrepancy might be resolved if (1) the adsorption energy of O atoms to ice is greater than 800 K; (2) the total face-on A V of the Bar is less than required for O_2 to reach peak abundance; (3) the O_2 emission arises within dense clumps with a small beam filling factor; or (4) the face-on depth into the Bar where O_2 reaches its peak abundance, which is density dependent, corresponds to a sky position different from that sampled by our Herschel beams

Distribution of Water Vapor in Molecular Clouds

We report the results of a large-area study of water vapor along the Orion Molecular Cloud ridge, the purpose of which was to determine the depth-dependent distribution of gas-phase water in dense molecular clouds. We find that the water vapor measured toward 77 spatial positions along the face-on Orion ridge, excluding positions surrounding the outflow associated with BN/KL and IRc2, display integrated intensities that correlate strongly with known cloud surface tracers such as CN, C2H, 13CO J =5-4, and HCN, and less well with the volume tracer N2H+. Moreover, at total column densities corresponding to Av < 15 mag., the ratio of H2O to C18O integrated intensities shows a clear rise approaching the cloud surface. We show that this behavior cannot be accounted for by either optical depth or excitation effects, but suggests that gas-phase water abundances fall at large Av. These results are important as they affect measures of the true water-vapor abundance in molecular clouds by highlighting the limitations of comparing measured water vapor column densities with such traditional cloud tracers as 13CO or C18O. These results also support cloud models that incorporate freeze-out of molecules as a critical component in determining the depth-dependent abundance of water vapor

BMQ

BMQ: Boston Medical Quarterly was published from 1950-1966 by the Boston University School of Medicine and the Massachusetts Memorial Hospitals

Water, O2 and Ice in Molecular Clouds

We model the temperature and chemical structure of molecular clouds as a function of depth into the cloud, assuming a cloud of constant density n illuminated by an external FUV (6 eV < E < 13.6 eV) flux G_0 (scaling factor in multiples of the local interstellar field). Extending previous photodissociation region models, we include the freezing of species, simple grain surface chemistry, and desorption (including FUV photodesorption) of ices. We also treat the opaque cloud interior with time-dependent chemistry. Here, under certain conditions, gas phase elemental oxygen freezes out as water ice and the elemental C/O abundance ratio can exceed unity, leading to complex carbon chemistry. Gas phase H2O and O2 peak in abundance at intermediate depth into the cloud, roughly A_V~3-8 from the surface, the depth proportional to ln(G_0/n). Closer to the surface, molecules are photodissociated. Deeper into the cloud, molecules freeze to grain surfaces. At intermediate depths photodissociation rates are attenuated by dust extinction, but photodesorption prevents total freezeout. For G_0 < 500, abundances of H2O and O2 peak at values ~10^(-7), producing columns ~10^(15) per cm^2, independent of G_0 and n. The peak abundances depend primarily on the product of the photodesorption yield of water ice and the grain surface area per H nucleus. At higher values of G_0, thermal desorption of O atoms from grains enhances the gas phase H2O peak abundance and column slightly, whereas the gas phase O2 peak abundance rises to ~10^(-5) and the column to ~2x10^(16) per cm^2. We present simple analytic equations for the abundances as a function of depth which clarify the dependence on parameters. The models are applied to observations of H2O, O2, and water ice in a number of sources, including B68, NGC 2024, and Rho Oph.Comment: 70 pages including 17 figure

Epidemiological study of E. coli O157:H7 isolated in Northern Ireland using pulsed-field gel electrophoresis (PFGE)

In Northern Ireland over the last 7 years, there is a mean of 41.9 laboratory reports per annum of human gastrointestinal infection (range 19-54) caused by Escherichia coli O157:H7. In the preceding years 1992-1996, reports were 5.4 per annum, whereas in 1997-2000, reports increased from 30 to 54 per annum. This high level has continued on an annual basis to date. The aim of this study was therefore to retrospectively examine this period of exponential increase in reports to help ascertain the genetic relatedness of strains employing pulsed-field gel electrophoresis (PFGE), as no data on the molecular epidemiology of E. coli O157:H7 in Northern Ireland has yet been published. Clinical isolates (n=84) were PFGE typed employing Xba I digestion and resulting band profiles demonstrated the presence of 13, 9 and 16 clonal types, for 1997, 1998 and 1999, respectively. In 1998, five clonal types remained from 1997 with the introduction of 4 new clonal types, whereas in 1999, 10 new clonal types were observed, accounting for over half (58%) of the E. coli O157 isolates for that year. These data suggest that, unlike gastrointestinal infections due to thermophilic campylobacters, there was considerable genetic evolution of PFGE clonal types of E. coli O157, through the displacement and emergence of genotypes. Further studies are now required to find the environmental reservoirs of these common clonal types of clinical E. coli O157:H7 in Northern Ireland to help define sources and routes of transmission of this infection locally

Water Absorption From Line-of-Sight Clouds Toward W49A

We have observed 6 clouds along the line-of-sight toward W49A using the Submillimeter Wave Astronomy Satellite (SWAS) and several ground-based observatories. The ortho-H2O 1-0 and OH (1665 and 1667 MHz) transitions are observed in absorption, whereas the low-J CO, 13CO, and C18O lines, as well as the [CI] 1-0 transition, are seen in emission. By using both the o-H218O and o-H2O absorption lines, we are able to constrain the column-averaged o-H_2O abundances in each line-of-sight cloud to within about an order of magnitude. Assuming the standard N(H2)/N(CO) ratio of 10^4, we find N(o-H2O)/N(H2) = 8.1 x 10^-8 - 4 x 10^-7 for three clouds with optically thin water lines. In three additional clouds, the H$_2$O lines are saturated so we have used observations of the H218O ground-state transition to find upper limits to the water abundance of 8.2x 10^-8 - 1.5x10^-6. We measure the OH abundance from the average of the 1665 and 1667 MHz observations and find N(OH)/N(H2) = 2.3x10^-7 - 1.1x10^-6. The o-H2O and OH abundances are similar to those determined for line-of-sight water absorption features towards W51 and Sgr B2 but are higher than those seen from water emission lines in molecular clouds. However, the clouds towards W49 have lower ratios of OH relative to H2O column densities than are predicted by simple models which assume that dissociative recombination is the primary formation pathway for OH and H2O. Building on the work of Neufeld et al. (2002), we present photo-chemistry models including additional chemical effects, which can also explain the observed OH and H2O column densities as well as the observed H2O/CO abundance ratios.Comment: 32 pages, 7 figures, To appear in ApJ April 10 issu

Attitudes and Performance: An Analysis of Russian Workers

This paper investigates the relationship between locus of control and performance among Russian employees, using survey data collected at 28 workplaces in 2002 in Taganrog and at 47 workplaces in 2003 in Ekaterinburg. We develop a measure that allows us to categorize the Russian employees participating in our survey as exhibiting an internal or external locus of control. We then assess the extent to which there are significant differences between “internals” and “externals” in work-related attitudes that may affect performance. In particular, we focus on (1) attitudes about outcomes associated with hard work, (2) level of job satisfaction, (3) expectation of receiving a desired reward, and (4) loyalty to and involvement with one’s organization. In each case we identify where gender and generational differences emerge. Our main objective is to determine whether Russian employees who exhibit an internal locus of control perform better than employees with an external locus of control. Our performance measures include earnings, expected promotions, and assessments of the quantity and quality of work in comparison to others at the same organization doing a similar job. Controlling for a variety of worker characteristics, we find that (1) individuals who exhibit an internal locus of control perform better, but this result is not always statistically significant; (2) even among “internals,” women earn significantly less than men and have a much lower expectation of promotion; (3) even among “internals,” experience with unemployment has a negative influence on performance.http://deepblue.lib.umich.edu/bitstream/2027.42/40144/3/wp758.pd

An optimized TOPS+ comparison method for enhanced TOPS models

This article has been made available through the Brunel Open Access Publishing Fund.Background Although methods based on highly abstract descriptions of protein structures, such as VAST and TOPS, can perform very fast protein structure comparison, the results can lack a high degree of biological significance. Previously we have discussed the basic mechanisms of our novel method for structure comparison based on our TOPS+ model (Topological descriptions of Protein Structures Enhanced with Ligand Information). In this paper we show how these results can be significantly improved using parameter optimization, and we call the resulting optimised TOPS+ method as advanced TOPS+ comparison method i.e. advTOPS+. Results We have developed a TOPS+ string model as an improvement to the TOPS [1-3] graph model by considering loops as secondary structure elements (SSEs) in addition to helices and strands, representing ligands as first class objects, and describing interactions between SSEs, and SSEs and ligands, by incoming and outgoing arcs, annotating SSEs with the interaction direction and type. Benchmarking results of an all-against-all pairwise comparison using a large dataset of 2,620 non-redundant structures from the PDB40 dataset [4] demonstrate the biological significance, in terms of SCOP classification at the superfamily level, of our TOPS+ comparison method. Conclusions Our advanced TOPS+ comparison shows better performance on the PDB40 dataset [4] compared to our basic TOPS+ method, giving 90 percent accuracy for SCOP alpha+beta; a 6 percent increase in accuracy compared to the TOPS and basic TOPS+ methods. It also outperforms the TOPS, basic TOPS+ and SSAP comparison methods on the Chew-Kedem dataset [5], achieving 98 percent accuracy. Software Availability: The TOPS+ comparison server is available at http://balabio.dcs.gla.ac.uk/mallika/WebTOPS/.This article is available through the Brunel Open Access Publishing Fun