Dissolution dominating calcification process in polar pteropods close to the point of aragonite undersaturation

Thecosome pteropods are abundant upper-ocean zooplankton that build aragonite shells. Ocean acidification results in the lowering of aragonite saturation levels in the surface layers, and several incubation studies have shown that rates of calcification in these organisms decrease as a result. This study provides a weight-specific net calcification rate function for thecosome pteropods that includes both rates of dissolution and calcification over a range of plausible future aragonite saturation states (Omega_Ar). We measured gross dissolution in the pteropod Limacina helicina antarctica in the Scotia Sea (Southern Ocean) by incubating living specimens across a range of aragonite saturation states for a maximum of 14 days. Specimens started dissolving almost immediately upon exposure to undersaturated conditions (Omega_Ar,0.8), losing 1.4% of shell mass per day. The observed rate of gross dissolution was different from that predicted by rate law kinetics of aragonite dissolution, in being higher at Var levels slightly above 1 and lower at Omega_Ar levels of between 1 and 0.8. This indicates that shell mass is affected by even transitional levels of saturation, but there is, nevertheless, some partial means of protection for shells when in undersaturated conditions. A function for gross dissolution against Var derived from the present observations was compared to a function for gross calcification derived by a different study, and showed that dissolution became the dominating process even at Omega_Ar levels close to 1, with net shell growth ceasing at an Omega_Ar of 1.03. Gross dissolution increasingly dominated net change in shell mass as saturation levels decreased below 1. As well as influencing their viability, such dissolution of pteropod shells in the surface layers will result in slower sinking velocities and decreased carbon and carbonate fluxes to the deep ocean

Extensive dissolution of live pteropods in the Southern Ocean

The carbonate chemistry of the surface ocean is rapidly changing with ocean acidification, a result of human activities. In the upper layers of the Southern Ocean, aragonite—a metastable form of calcium carbonate with rapid dissolution kinetics—may become undersaturated by 2050 (ref. 2). Aragonite undersaturation is likely to affect aragonite-shelled organisms, which can dominate surface water communities in polar regions. Here we present analyses of specimens of the pteropod Limacina helicina antarctica that were extracted live from the Southern Ocean early in 2008. We sampled from the top 200m of the water column, where aragonite saturation levels were around 1, as upwelled deep water is mixed with surface water containing anthropogenic CO2. Comparing the shell structure with samples from aragonite-supersaturated regions elsewhere under a scanning electron microscope, we found severe levels of shell dissolution in the undersaturated region alone. According to laboratory incubations of intact samples with a range of aragonite saturation levels, eight days of incubation in aragonite saturation levels of 0.94– 1.12 produces equivalent levels of dissolution. As deep-water upwelling and CO2 absorption by surface waters is likely to increase as a result of human activities2,4, we conclude that upper ocean regions where aragonite-shelled organisms are affected by dissolution are likely to expand

Recent variability of the global ocean carbon sink

We present a new observation-based estimate of the global oceanic carbon dioxide (CO2) sink and its temporal variation on a monthly basis from 1998 through 2011 and at a spatial resolution of 1×1. This sink estimate rests upon a neural network-based mapping of global surface ocean observations of the partial pressure of CO2 (pCO2) from the Surface Ocean CO2 Atlas database. The resulting pCO2 has small biases when evaluated against independent observations in the different ocean basins, but larger randomly distributed differences exist particularly in high latitudes. The seasonal climatology of our neural network-based product agrees overall well with the Takahashi et al. (2009) climatology, although our product produces a stronger seasonal cycle at high latitudes. From our global pCO2 product, we compute a mean net global ocean (excluding the Arctic Ocean and coastal regions) CO2 uptake flux of −1.42 ± 0.53 Pg C yr−1, which is in good agreement with ocean inversion-based estimates. Our data indicate a moderate level of interannual variability in the ocean carbon sink (±0.12 Pg C yr−1, 1𝜎) from 1998 through 2011, mostly originating from the equatorial Pacific Ocean, and associated with the El Nino–Southern Oscillation. Accounting for steady state riverine and Arctic Ocean carbon fluxes our estimate further implies a mean anthropogenic CO2 uptake of −1.99 ± 0.59 Pg C yr−1 over the analysis period. From this estimate plus the most recent estimates for fossil fuel emissions and atmospheric CO2 accumulation, we infer a mean global land sink of −2.82 ± 0.85 Pg C yr−1 over the 1998 through 2011 period with strong interannual variation

Annual sea-air CO2fluxes in the Bering Sea: insights from new autumn and winter observations of a seasonally ice-covered continental shelf

High-resolution data collected from several programs have greatly increased the spatiotemporal resolution of pCO2(sw) data in the Bering Sea, and provided the first autumn and winter observations. Using data from 2008 to 2012, monthly climatologies of sea-air CO2 fluxes for the Bering Sea shelf area from April to December were calculated, and contributions of physical and biological processes to observed monthly sea-air pCO2 gradients (?pCO2) were investigated. Net efflux of CO2 was observed during November, December, and April, despite the impact of sea surface cooling on ?pCO2. Although the Bering Sea was believed to be a moderate to strong atmospheric CO2 sink, we found that autumn and winter CO2 effluxes balanced 65% of spring and summer CO2 uptake. Ice cover reduced sea-air CO2 fluxes in December, April, and May. Our estimate for ice-cover corrected fluxes suggests the mechanical inhibition of CO2 flux by sea-ice cover has only a small impact on the annual scale (<2%). An important data gap still exists for January to March, the period of peak ice cover and the highest expected retardation of the fluxes. By interpolating between December and April using assumptions of the described autumn and winter conditions, we estimate the Bering Sea shelf area is an annual CO2 sink of ?6.8 Tg C yr?1. With changing climate, we expect warming sea surface temperatures, reduced ice cover, and greater wind speeds with enhanced gas exchange to decrease the size of this CO2 sink by augmenting conditions favorable for greater wintertime outgassing

Locally interpolated alkalinity regression for global alkalinity estimation

We introduce methods and software for estimating total seawater alkalinity from salinity and any combination of up to four other parameters (potential temperature, apparent oxygen utilization, total dissolved nitrate, and total silicate). The methods return estimates anywhere in the global ocean with comparable accuracy to other published alkalinity estimation techniques. The software interpolates between a predetermined grid of coefficients for linear regressions onto arbitrary latitude, longitude, and depth coordinates, and thereby avoids the estimate discontinuities many similar methods return when transitioning from one regression constant set to another. The software can also return uncertainty estimates scaled by user-provided input parameter uncertainties. The methods have been optimized for the open ocean, for which we estimate globally averaged errors of 5.8–10.4 μmol kg⁻¹ depending on which combination of regression parameters is used. We expect these methods to be especially useful for better constraining the carbonate system from measurement platforms—such as biogeochemical Argo floats—that are only capable of measuring one carbonate system parameter (e.g., pH). It may also provide a useful way of simulating alkalinity for Earth system models that do not resolve the tracer prognostically.This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by Wiley Periodicals, Inc. on behalf of the Association for the Sciences of Limnology and Oceanography. The published article can be found at: http://www.aslo.org/lomethods/index.html Datasets were acquired from the Carbon Dioxide Information and Analysis Center (CDIAC) webpage, from the HOT-DOGS data portal (http://hahana.soest.hawaii.edu/hot/hot-dogs/), and from the BATS data portal (http://bats.bios.edu/)

Rapid Environmental Change over the Past Decade Revealed by Isotopic Analysis of the California Mussel in the Northeast Pacific

The anthropogenic input of fossil fuel carbon into the atmosphere results in increased carbon dioxide (CO2) into the oceans, a process that lowers seawater pH, decreases alkalinity and can inhibit the production of shell material. Corrosive water has recently been documented in the northeast Pacific, along with a rapid decline in seawater pH over the past decade. A lack of instrumentation prior to the 1990s means that we have no indication whether these carbon cycle changes have precedence or are a response to recent anthropogenic CO2 inputs. We analyzed stable carbon and oxygen isotopes (δ13C, δ18O) of decade-old California mussel shells (Mytilus californianus) in the context of an instrumental seawater record of the same length. We further compared modern shells to shells from 1000 to 1340 years BP and from the 1960s to the present and show declines in the δ13C of modern shells that have no historical precedent. Our finding of decline in another shelled mollusk (limpet) and our extensive environmental data show that these δ13C declines are unexplained by changes to the coastal food web, upwelling regime, or local circulation. Our observed decline in shell δ13C parallels other signs of rapid changes to the nearshore carbon cycle in the Pacific, including a decline in pH that is an order of magnitude greater than predicted by an equilibrium response to rising atmospheric CO2, the presence of low pH water throughout the region, and a record of a similarly steep decline in δ13C in algae in the Gulf of Alaska. These unprecedented changes and the lack of a clear causal variable underscores the need for better quantifying carbon dynamics in nearshore environments

Assessment of the Carbonate Chemistry Seasonal Cycles in the Southern Ocean From Persistent Observational Platforms

Observations from Southern Ocean Carbon and Climate Observations and Modeling (SOCCOM) biogeochemical profiling Argo floats are used to characterize the climatological seasonal cycles and drivers of dissolved inorganic carbon, total alkalinity, pH, the partial pressure of carbon dioxide (CO2), and the saturation state of aragonite at the surface and at 200 m across five Southern Ocean frontal regimes, including under sea ice. The Southern Ocean ranges from a temperature-dominated system in the northernmost Subtropical Zone to a biologically dominated system in the most poleward Seasonal Sea Ice Zone. In all zones, the ingassing or outgassing of CO2 must be balanced by geostrophic and Ekman transport, mixing from below, and particle transport of carbon into or out of the euphotic zone. The climatological seasonal cycles spanning the period from 2014 to 2017 compare favorably with existing climatologies in spring and summer and less so during winter months, at higher latitudes, and in ice-covered regions due, in part, to limited wintertime observations before SOCCOM. We observe increases in the carbon and nutrient content of surface waters south of the Subantarctic Front between climatological data products and the SOCCOM float climatologies, even after adjusting for anthropogenic change, suggesting a large-scale increase in the amount of upwelled carbon- and nutrient-rich deep waters. This increased upwelling corresponds to a positive Southern Annular Mode Index over 2014-2017 and likely acts to decrease the magnitude of the Southern Ocean sink of total carbon by increasing outgassing of natural CO2, especially during winter months

Substrate interaction defects in histidylâ tRNA synthetase linked to dominant axonal peripheral neuropathy

Histidylâ tRNA synthetase (HARS) ligates histidine to cognate tRNA molecules, which is required for protein translation. Mutations in HARS cause the dominant axonal peripheral neuropathy Charcotâ Marieâ Tooth disease type 2W (CMT2W); however, the precise molecular mechanism remains undefined. Here, we investigated three HARS missense mutations associated with CMT2W (p.Tyr330Cys, p.Ser356Asn, and p.Val155Gly). The three mutations localize to the HARS catalytic domain and failed to complement deletion of the yeast ortholog (HTS1). Enzyme kinetics, differential scanning fluorimetry (DSF), and analytical ultracentrifugation (AUC) were employed to assess the effect of these substitutions on primary aminoacylation function and overall dimeric structure. Notably, the p.Tyr330Cys, p.Ser356Asn, and p.Val155Gly HARS substitutions all led to reduced aminoacylation, providing a direct connection between CMT2Wâ linked HARS mutations and loss of canonical ARS function. While DSF assays revealed that only one of the variants (p.Val155Gly) was less thermally stable relative to wildâ type, all three HARS mutants formed stable dimers, as measured by AUC. Our work represents the first biochemical analysis of CMTâ associated HARS mutations and underscores how loss of the primary aminoacylation function can contribute to disease pathology.Diseaseâ causing variants in multiple aminoacylâ tRNA synthetase genes have been linked to the dominant inherited peripheral neuropathy Charcot Marie Tooth (CMT) disease. Here, we employed yeast complementation, enzyme kinetics, differential scanning fluorimetry (DSF), and analytical ultra centrifugation (AUC) to investigate three histidylâ tRNA synthetase (HARS) missense mutations associated with CMT2W (p.Tyr330Cys, p.Ser356Asn, and p.Val155Gly). The mutant substitutions all led to reduced catalytic activity and poorer histidine and ATP binding, illustrating how loss of primary aminoacylation function can contribute to disease pathology.Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/142441/1/humu23380_am.pdfhttps://deepblue.lib.umich.edu/bitstream/2027.42/142441/2/humu23380.pd