Users manual: Dynamics of two bodies connected by an elastic tether, six degrees of freedom forebody and five degrees of freedom decelerator

The equations of motion and a computer program for the dynamics of a six degree of freedom body joined to a five degree of freedom body by a quasilinear elastic tether are presented. The forebody is assumed to be a completely general rigid body with six degrees of freedom; the decelerator is also assumed to be rigid, but with only five degrees of freedom (symmetric about its longitudinal axis). The tether is represented by a spring and dashpot in parallel, where the spring constant is a function of tether elongation. Lagrange's equation is used to derive the equations of motion with the Lagrange multiplier technique used to express the constraint provided by the tether. A computer program is included which provides a time history of the dynamics of both bodies and the tension in the tether

Computer program for the load and trajectory analysis of two DOF bodies connected by an elastic tether: Users manual

The derivation of the differential equations of motion of a 3 Degrees of Freedom body joined to a 3 Degrees of Freedom body by an elastic tether. The tether is represented by a spring and dashpot in parallel. A computer program which integrates the equations of motion is also described. Although the derivation of the equations of motions are for a general system, the computer program is written for defining loads in large boosters recovered by parachutes

Patterns of Individual Shopping Behavior

Much of economic theory is built on observations of aggregate, rather than individual, behavior. Here, we present novel findings on human shopping patterns at the resolution of a single purchase. Our results suggest that much of our seemingly elective activity is actually driven by simple routines. While the interleaving of shopping events creates randomness at the small scale, on the whole consumer behavior is largely predictable. We also examine income-dependent differences in how people shop, and find that wealthy individuals are more likely to bundle shopping trips. These results validate previous work on mobility from cell phone data, while describing the unpredictability of behavior at higher resolution.Comment: 4 pages, 5 figure

The Survey for Ionization in Neutral Gas Galaxies: I. Description and Initial Results

We introduce the Survey for Ionization in Neutral Gas Galaxies (SINGG), a census of star formation in HI-selected galaxies. The survey consists of H-alpha and R-band imaging of a sample of 468 galaxies selected from the HI Parkes All Sky Survey (HIPASS). The sample spans three decades in HI mass and is free of many of the biases that affect other star forming galaxy samples. We present the criteria for sample selection, list the entire sample, discuss our observational techniques, and describe the data reduction and calibration methods. This paper focuses on 93 SINGG targets whose observations have been fully reduced and analyzed to date. The majority of these show a single Emission Line Galaxy (ELG). We see multiple ELGs in 13 fields, with up to four ELGs in a single field. All of the targets in this sample are detected in H-alpha indicating that dormant (non-star forming) galaxies with M(HI) > ~3e7 M_sun are very rare. A database of the measured global properties of the ELGs is presented. The ELG sample spans four orders of magnitude in luminosity (H-alpha and R-band), and H-alpha surface brightness, nearly three orders of magnitude in R surface brightness and nearly two orders of magnitude in H-alpha equivalent width (EW). The surface brightness distribution of our sample is broader than that of the Sloan Digital Sky Survey spectroscopic sample, the (EW) distribution is broader than prism-selected samples, and the morphologies found include all common types of star forming galaxies (e.g. irregular, spiral, blue compact dwarf, starbursts, merging and colliding systems, and even residual star formation in S0 and Sa spirals). (abridged)Comment: 28 pages, ApJS, in press. Full resolution version with all panels of Fig. 8 available at http://sungg.pha.jhu.edu/publications.html . On line data available at http://sungg.pha.jhu.edu/PubData/ . Author list corrected. Wrong value for f_ap used in eq. 7 now corrected; typos corrected, non-used references replaced, others update

The Survey for Ionization in Neutral Gas Galaxies- II. The Star Formation Rate Density of the Local Universe

We derive observed Halpha and R band luminosity densities of an HI-selected sample of nearby galaxies using the SINGG sample to be l_Halpha' = (9.4 +/- 1.8)e38 h_70 erg s^-1 Mpc^-3 for Halpha and l_R' = (4.4 +/- 0.7)e37 h_70 erg s^-1 A^-1 Mpc^-3 in the R band. This R band luminosity density is approximately 70% of that found by the Sloan Digital Sky Survey. This leads to a local star formation rate density of log(SFRD) = -1.80 +0.13/-0.07(random) +/- 0.03(systematic) + log(h_70) after applying a mean internal extinction correction of 0.82 magnitudes. The gas cycling time of this sample is found to be t_gas = 7.5 +1.3/-2.1 Gyr, and the volume-averaged equivalent width of the SINGG galaxies is EW(Halpha) = 28.8 +7.2/-4.7 A (21.2 +4.2/-3.5 A without internal dust correction). As with similar surveys, these results imply that SFRD(z) decreases drastically from z ~ 1.5 to the present. A comparison of the dynamical masses of the SINGG galaxies evaluated at their optical limits with their stellar and HI masses shows significant evidence of downsizing: the most massive galaxies have a larger fraction of their mass locked up in stars compared with HI, while the opposite is true for less massive galaxies. We show that the application of the Kennicutt star formation law to a galaxy having the median orbital time at the optical limit of this sample results in a star formation rate decay with cosmic time similar to that given by the SFRD(z) evolution. This implies that the SFRD(z) evolution is primarily due to the secular evolution of galaxies, rather than interactions or mergers. This is consistent with the morphologies predominantly seen in the SINGG sample.Comment: 15 pages, 5 figures, ApJ in press. Data available at http://sungg.pha.jhu.edu/PubData/ Corrected: Minor typos and formatting issues fixe

Interactions between the Nse3 and Nse4 Components of the SMC5-6 Complex Identify Evolutionarily Conserved Interactions between MAGE and EID Families

The SMC5-6 protein complex is involved in the cellular response to DNA damage. It is composed of 6-8 polypeptides, of which Nse1, Nse3 and Nse4 form a tight sub-complex. MAGEG1, the mammalian ortholog of Nse3, is the founding member of the MAGE (melanoma-associated antigen) protein family and Nse4 is related to the EID (E1A-like inhibitor of differentiation) family of transcriptional repressors.Using site-directed mutagenesis, protein-protein interaction analyses and molecular modelling, we have identified a conserved hydrophobic surface on the C-terminal domain of Nse3 that interacts with Nse4 and identified residues in its N-terminal domain that are essential for interaction with Nse1. We show that these interactions are conserved in the human orthologs. Furthermore, interaction of MAGEG1, the mammalian ortholog of Nse3, with NSE4b, one of the mammalian orthologs of Nse4, results in transcriptional co-activation of the nuclear receptor, steroidogenic factor 1 (SF1). In an examination of the evolutionary conservation of the Nse3-Nse4 interactions, we find that several MAGE proteins can interact with at least one of the NSE4/EID proteins.We have found that, despite the evolutionary diversification of the MAGE family, the characteristic hydrophobic surface shared by all MAGE proteins from yeast to humans mediates its binding to NSE4/EID proteins. Our work provides new insights into the interactions, evolution and functions of the enigmatic MAGE proteins

Disposition of Federally Owned Surpluses

PDZ domains are scaffolding modules in protein-protein interactions that mediate numerous physiological functions by interacting canonically with the C-terminus or non-canonically with an internal motif of protein ligands. A conserved carboxylate-binding site in the PDZ domain facilitates binding via backbone hydrogen bonds; however, little is known about the role of these hydrogen bonds due to experimental challenges with backbone mutations. Here we address this interaction by generating semisynthetic PDZ domains containing backbone amide-to-ester mutations and evaluating the importance of individual hydrogen bonds for ligand binding. We observe substantial and differential effects upon amide-to-ester mutation in PDZ2 of postsynaptic density protein 95 and other PDZ domains, suggesting that hydrogen bonding at the carboxylate-binding site contributes to both affinity and selectivity. In particular, the hydrogen-bonding pattern is surprisingly different between the non-canonical and canonical interaction. Our data provide a detailed understanding of the role of hydrogen bonds in protein-protein interactions

Genome-wide analysis of ivermectin response by Onchocerca volvulus reveals that genetic drift and soft selective sweeps contribute to loss of drug sensitivity

Treatment of onchocerciasis using mass ivermectin administration has reduced morbidity and transmission throughout Africa and Central/South America. Mass drug administration is likely to exert selection pressure on parasites, and phenotypic and genetic changes in several Onchocerca volvulus populations from Cameroon and Ghana-exposed to more than a decade of regular ivermectin treatment-have raised concern that sub-optimal responses to ivermectin's anti-fecundity effect are becoming more frequent and may spread.Pooled next generation sequencing (Pool-seq) was used to characterise genetic diversity within and between 108 adult female worms differing in ivermectin treatment history and response. Genome-wide analyses revealed genetic variation that significantly differentiated good responder (GR) and sub-optimal responder (SOR) parasites. These variants were not randomly distributed but clustered in ~31 quantitative trait loci (QTLs), with little overlap in putative QTL position and gene content between the two countries. Published candidate ivermectin SOR genes were largely absent in these regions; QTLs differentiating GR and SOR worms were enriched for genes in molecular pathways associated with neurotransmission, development, and stress responses. Finally, single worm genotyping demonstrated that geographic isolation and genetic change over time (in the presence of drug exposure) had a significantly greater role in shaping genetic diversity than the evolution of SOR.This study is one of the first genome-wide association analyses in a parasitic nematode, and provides insight into the genomics of ivermectin response and population structure of O. volvulus. We argue that ivermectin response is a polygenically-determined quantitative trait (QT) whereby identical or related molecular pathways but not necessarily individual genes are likely to determine the extent of ivermectin response in different parasite populations. Furthermore, we propose that genetic drift rather than genetic selection of SOR is the underlying driver of population differentiation, which has significant implications for the emergence and potential spread of SOR within and between these parasite populations