Experimental reintroduction of woody debris on the Williams River, NSW: geomorphic and ecological responses

A total of 436 logs were used to create 20 engineered log jams (ELJs) in a 1.1 km reach of the Williams River, NSW, Australia, a gravel-bed river that has been desnagged and had most of its riparian vegetation removed over the last 200 years. The experiment was designed to test the effectiveness of reintroducing woody debris (WD) as a means of improving channel stability and recreating habitat diversity. The study assessed geomorphic and ecological responses to introducing woody habitat by comparing paired test and control reaches. Channel characteristics (e.g. bedforms, bars, texture) within test and control reaches were assessed before and after wood placement to quantify the morphological variability induced by the ELJs in the test reach. Since construction in September 2000, the ELJs have been subjected to five overtopping flows, three of which were larger than the mean annual flood. A high-resolution three-dimensional survey of both reaches was completed after major bed-mobilizing flows. Cumulative changes induced by consecutive floods were also assessed. After 12 months, the major geomorphologic changes in the test reach included an increase in pool and riffle area and pool depth; the addition of a pool-riffle sequence; an increase by 0.5-1 m in pool-riffle amplitude; a net gain of 40 m3 of sediment storage per 1000 m2 of channel area (while the control reach experienced a net loss of 15 m3/1000 m2 over the same period); and a substantial increase in the spatial complexity of bed-material distribution. Fish assemblages in the test reach showed an increase in species richness and abundance, and reduced temporal variability compared to the reference reach, suggesting that the changes in physical habitat were beneficial to fish at the reach scale

Putting the wood back into our rivers: an experiment in river rehabilitation

This paper presents an overview of a project established to assess the effectiveness of woody debris (WD) reintroduction as a river rehabilitation tool. An outline of an experiment is presented that aims to develop and assess the effectiveness of engineered log jams (ELJs) under Australian conditions, and to demonstrate the potential for using a range of ELJs to stabilise a previously de-snagged, high energy gravel-bed channel. Furthermore, the experiment will test the effectiveness of a reach based rehabilitation strategy to increase geomorphic variability and hence habitat diversity. While primarily focusing on the geomorphic and engineering aspects of the rehabilitation strategy, fish and freshwater mussel populations are also being monitored. The project is located within an 1100m reach of the Williams River, NSW. Twenty separate ELJ structures were constructed, incorporating a total of 430 logs placed without any artificial anchoring (e.g., no cabling or imported ballast). A geomorphic control reach was established 3.1 km upstream of the project reach. In the 6 months since the structures were built the study site has experienced 6 flows that have overtopped most structures, 3 of the flows were in excess of the mean annual flood, inundating 19 of the ELJs by 2 - 3 m, and one by 0.5 m. Early results indicate that with the exception of LS4 and LS5, all structures are performing as intended and that the geomorphic variability of the reach has substantially increased

Particle tagging and its implications for stellar population dynamics

We establish a controlled comparison between the properties of galactic stellar haloes obtained with hydrodynamical simulations and with ‘particle tagging’. Tagging is a fast way to obtain stellar population dynamics: instead of tracking gas and star formation, it ‘paints’ stars directly on to a suitably defined subset of dark matter particles in a collisionless, dark-matter-only simulation. Our study shows that ‘live’ particle tagging schemes, where stellar masses are painted on to the dark matter particles dynamically throughout the simulation, can generate good fits to the hydrodynamical stellar density profiles of a central Milky Way-like galaxy and its most prominent substructure. Energy diffusion processes are crucial to reshaping the distribution of stars in infalling spheroidal systems and hence the final stellar halo. We conclude that the success of any particular tagging scheme hinges on this diffusion being taken into account, and discuss the role of different subgrid feedback prescriptions in driving this diffusion

Observation of exclusive DVCS in polarized electron beam asymmetry measurements

We report the first results of the beam spin asymmetry measured in the reaction e + p -> e + p + gamma at a beam energy of 4.25 GeV. A large asymmetry with a sin(phi) modulation is observed, as predicted for the interference term of Deeply Virtual Compton Scattering and the Bethe-Heitler process. The amplitude of this modulation is alpha = 0.202 +/- 0.028. In leading-order and leading-twist pQCD, the alpha is directly proportional to the imaginary part of the DVCS amplitude.Comment: 6 pages, 5 figure

First measurement of direct f0(980)f_0(980) photoproduction on the proton

We report on the results of the first measurement of exclusive $f_0(980)$ meson photoproduction on protons for $E_\gamma=3.0 - 3.8$ GeV and $-t = 0.4-1.0$ GeV$^2$. Data were collected with the CLAS detector at the Thomas Jefferson National Accelerator Facility. The resonance was detected via its decay in the $\pi^+ \pi^-$ channel by performing a partial wave analysis of the reaction $\gamma p \to p \pi^+ \pi^-$. Clear evidence of the $f_0(980)$ meson was found in the interference between $P$ and $S$ waves at $M_{\pi^+ \pi^-}\sim 1$ GeV. The $S$-wave differential cross section integrated in the mass range of the $f_0(980)$ was found to be a factor of 50 smaller than the cross section for the $\rho$ meson. This is the first time the $f_0(980)$ meson has been measured in a photoproduction experiment

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

For a decade, The Cancer Genome Atlas (TCGA) program collected clinicopathologic annotation data along with multi-platform molecular profiles of more than 11,000 human tumors across 33 different cancer types. TCGA clinical data contain key features representing the democratized nature of the data collection process. To ensure proper use of this large clinical dataset associated with genomic features, we developed a standardized dataset named the TCGA Pan-Cancer Clinical Data Resource (TCGA-CDR), which includes four major clinical outcome endpoints. In addition to detailing major challenges and statistical limitations encountered during the effort of integrating the acquired clinical data, we present a summary that includes endpoint usage recommendations for each cancer type. These TCGA-CDR findings appear to be consistent with cancer genomics studies independent of the TCGA effort and provide opportunities for investigating cancer biology using clinical correlates at an unprecedented scale. Analysis of clinicopathologic annotations for over 11,000 cancer patients in the TCGA program leads to the generation of TCGA Clinical Data Resource, which provides recommendations of clinical outcome endpoint usage for 33 cancer types