Digital photography for assessing the link between vegetation phenology and CO2 exchange in two contrasting northern ecosystems

Digital repeat photography has become a widely used tool for assessing the annual course of vegetation phenology of different ecosystems. By using the green chromatic coordinate (GCC) as a greenness measure, we examined the feasibility of digital repeat photography for assessing the vegetation phenology in two contrasting high-latitude ecosystems. Ecosystem-atmosphere CO2 fluxes and various meteorological variables were continuously measured at both sites. While the seasonal changes in GCC were more obvious for the ecosystem that is dominated by annual plants (open wetland), clear seasonal patterns were also observed for the evergreen ecosystem (coniferous forest). Daily and seasonal time periods with sufficient solar radiation were determined based on images of a grey reference plate. The variability in cloudiness had only a minor effect on GCC, and GCC did not depend on the sun angle and direction either. The daily GCC of wetland correlated well with the daily photosynthetic capacity estimated from the CO2 flux measurements. At the forest site, the correlation was high in 2015 but there were discernible deviations during the course of the summer of 2014. The year-to-year differences were most likely generated by meteorological conditions, with higher temperatures coinciding with higher GCCs. In addition to depicting the seasonal course of ecosystem functioning, GCC was shown to respond to environmental changes on a timescale of days. Overall, monitoring of phenological variations with digital images provides a powerful tool for linking gross primary production and phenology.Peer reviewe

Ecosystem Services Related to Carbon Cycling - Modeling Present and Future Impacts in Boreal Forests

Forests regulate climate, as carbon, water and nutrient fluxes are modified by physiological processes of vegetation and soil. Forests also provide renewable raw material, food, and recreational possibilities. Rapid climate warming projected for the boreal zone may change the provision of these ecosystem services. We demonstrate model based estimates of present and future ecosystem services related to carbon cycling of boreal forests. The services were derived from biophysical variables calculated by two dynamic models. Future changes in the biophysical variables were driven by climate change scenarios obtained as results of a sample of global climate models downscaled for Finland, assuming three future pathways of radiative forcing. We introduce continuous monitoring on phenology to be used in model parametrization through a webcam network with automated image processing features. In our analysis, climate change impacts on key boreal forest ecosystem services are both beneficial and detrimental. Our results indicate an increase in annual forest growth of about 60% and an increase in annual carbon sink of roughly 40% from the reference period (1981-2010) to the end of the century. The vegetation active period was projected to start about 3 weeks earlier and end ten days later by the end of the century compared to currently. We found a risk for increasing drought, and a decrease in the number of soil frost days. Our results show a considerable uncertainty in future provision of boreal forest ecosystem services.peerReviewe

Reduced Food Intake and Body Weight in Mice Deficient for the G Protein-Coupled Receptor GPR82

G protein-coupled receptors (GPCR) are involved in the regulation of numerous physiological functions. Therefore, GPCR variants may have conferred important selective advantages during periods of human evolution. Indeed, several genomic loci with signatures of recent selection in humans contain GPCR genes among them the X-chromosomally located gene for GPR82. This gene encodes a so-called orphan GPCR with unknown function. To address the functional relevance of GPR82 gene-deficient mice were characterized. GPR82-deficient mice were viable, reproduced normally, and showed no gross anatomical abnormalities. However, GPR82-deficient mice have a reduced body weight and body fat content associated with a lower food intake. Moreover, GPR82-deficient mice showed decreased serum triacylglyceride levels, increased insulin sensitivity and glucose tolerance, most pronounced under Western diet. Because there were no differences in respiratory and metabolic rates between wild-type and GPR82-deficient mice our data suggest that GPR82 function influences food intake and, therefore, energy and body weight balance. GPR82 may represent a thrifty gene most probably representing an advantage during human expansion into new environments

New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk

Levels of circulating glucose are tightly regulated. To identify new loci influencing glycemic traits, we performed meta-analyses of 21 genome-wide association studies informative for fasting glucose, fasting insulin and indices of beta-cell function (HOMA-B) and insulin resistance (HOMA-IR) in up to 46,186 nondiabetic participants. Follow-up of 25 loci in up to 76,558 additional subjects identified 16 loci associated with fasting glucose and HOMA-B and two loci associated with fasting insulin and HOMA-IR. These include nine loci newly associated with fasting glucose (in or near ADCY5, MADD, ADRA2A, CRY2, FADS1, GLIS3, SLC2A2, PROX1 and C2CD4B) and one influencing fasting insulin and HOMA-IR (near IGF1). We also demonstrated association of ADCY5, PROX1, GCK, GCKR and DGKB-TMEM195 with type 2 diabetes. Within these loci, likely biological candidate genes influence signal transduction, cell proliferation, development, glucose-sensing and circadian regulation. Our results demonstrate that genetic studies of glycemic traits can identify type 2 diabetes risk loci, as well as loci containing gene variants that are associated with a modest elevation in glucose levels but are not associated with overt diabetes

Webcam network and image database for studies of phenological changes of vegetation and snow cover in Finland, image time series from 2014 to 2016

In recent years, monitoring of the status of ecosystems using low-cost web (IP) or time lapse cameras has received wide interest. With broad spatial coverage and high temporal resolution, networked cameras can provide information about snow cover and vegetation status, serve as ground truths to Earth observations and be useful for gap-filling of cloudy areas in Earth observation time series. Networked cameras can also play an important role in supplementing laborious phenological field surveys and citizen science projects, which also suffer from observer-dependent observation bias. We established a network of digital surveillance cameras for automated monitoring of phenological activity of vegetation and snow cover in the boreal ecosystems of Finland. Cameras were mounted at 14 sites, each site having 1-3 cameras. Here, we document the network, basic camera information and access to images in the permanent data repository (http://www.zenodo.org/communities/phenology_camera/). Individual DOI-referenced image time series consist of half-hourly images collected between 2014 and 2016 (https://doi.org/10.5281/zenodo.1066862). Additionally, we present an example of a colour index time series derived from images from two contrasting sites.Peer reviewe

On the Use of In-memory Analytics Workflows to Compute eScience Indicators from Large Climate Datasets

The need to apply complex algorithms on large volumes of data is boosting the development of technological solutions able to satisfy big data analytics needs in Cloud and HPC environments. In this context Ophidia represents a big data analytics framework for eScience offering a cross-domain solution for managing scientific, multi-dimensional data. It also exploits an in-memory-based distributed data storage and provides support for the submission of complex workflows by means of various interfaces compliant to well-known standards. This paper presents some applications of Ophidia for the computation of climate indicators defined in the CLIPC project, the WPS interface used for the submission and the workflow based approach employed

Automated Webcam Monitoring of Fractional Snow Cover in Northern Boreal Conditions

Fractional snow cover (FSC) is an important parameter to estimate snow water equivalent (SWE) and surface albedo important to climatic and hydrological applications. The presence of forest creates challenges to retrieve FSC accurately from satellite data, as forest canopy can block the sensor’s view of snow cover. In addition to the challenge related to presence of forest, in situ data of FSC—necessary for algorithm development and validation—are very limited. This paper investigates the estimation of FSC using digital imagery to overcome the obstacle caused by forest canopy, and the possibility to use this imagery in the validation of FSC derived from satellite data. FSC is calculated here using an algorithm based on defining a threshold value according to the histogram of an image, to classify a pixel as snow-covered or snow-free. Images from the MONIMET camera network, producing a continuous image series in Finland, are used in the analysis of FSC. The results obtained from automated image analysis of snow cover are compared with reference data estimated by visual inspection of same images. The results show the applicability and usefulness of digital imagery in the estimation of fractional snow cover in forested areas, with a Root Mean Squared Error (RMSE) in the range of 0.1–0.3 (with the full range of 0–1).201

ESLab application to a boreal watershed in southern Finland : preparing for a virtual research environment of ecosystem services

We report on preparatory work to develop a virtual laboratory for ecosystem services, ESLab, and demonstrate its pilot application in southern Finland. The themes included in the pilot are related to biodiversity conservation, climate mitigation and eutrophication mitigation. ESLab is a research environment for ecosystem services (ES), which considers ES indicators at different landscape scales: habitats, catchments and municipalities and shares the results by a service that utilizes machine readable interfaces. The study area of the pilot application is situated in the boreal region of southern Finland and covers 14 municipalities and ten catchments including forested, agricultural and nature conservation areas. We present case studies including: present carbon budgets of natural ecosystems; future carbon budgets with and without the removal of harvest residues for bioenergy production; and total phosphorus and nitrogen future loads under climate and agricultural yield and price scenarios. The ESLab allows researchers to present and share the results as visual maps, statistics and graphs. Our further aim is to provide a toolbox of easily accessible virtual services for ES researchers, to illustrate the comprehensive societal consequences of multiple decisions (e.g. concerning land use, fertilisation or harvesting) in a changing environment (climate, deposition).201

Responses of spring phenology to climate change

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