174 research outputs found
A hybrid Markov chain modeling architecture for workload on parallel computers
This paper proposes a comprehensive modeling architecture for workloads on parallel computers using Markov chains in combination with state dependent empirical distribution functions. This hybrid approach is based on the requirements of scheduling algorithms: the model considers the four essential job attributes submission time, number of required processors, estimated processing time, and actual processing time. To assess the goodness-of-fit of a workload model the similarity of sequences of real jobs and jobs generated from the model needs to be captured. We propose to reduce the complexity of this task and to evaluate the model by comparing the results of a widely-used scheduling algorithm instead. This approach is demonstrated with commonly used scheduling objectives like the Average Weighted Response Time and total Utilization. We compare their outcomes on the simulated workload traces from our model with those of an original workload trace from a real Massively Parallel Processing system installation. To verify this new evaluation technique, standard criteria for assessing the goodness-of-fit for workload models are additionally applied
Charakterisierung der lateralen Diffusion einzelner β<sub>2</sub>-adrenerger Rezeptor-Ligand-Komplexe an lebenden Zellen : Möglichkeiten und Grenzen der Einzelmolekülmikroskopie und Fluoreszenzkorrelationsspektroskopie
Die vorliegende Arbeit beschreibt das laterale Diffusionsverhalten von Komplexen aus ß2-adrenergem Rezeptor (ß2AR) und dem Liganden Noradrenalin, gekoppelt an den Fluoreszenzfarbstoff Alexa Fluor 532 (Alexa-NA), auf der Plasmamembran von A549-Zellen. Nach Etablierung eines Einzelmolekülmikroskops konnte durch die Detektion und Verfolgung einzelner Rezeptor-Ligand-Komplexe das Bewegungsverhalten detailliert analysiert werden. Anhand der Bewegungspfade konnten unterschiedliche Diffusionstypen charakterisiert und verschiedene Rezeptorzustände differenziert werden. Neben immobilen wurden insbesondere ß2AR-Alexa-NA-Komplexe mit einer langsamen lateralen Mobilität gefunden, die sich bevorzugt in räumlich begrenzten Domänen bewegten. Aus der Länge der Einzeltrajektorien konnte außerdem Rückschlüsse auf eine kurze Existenzdauer der Rezeptor-Ligand-Komplexe gezogen werden. Eine agonistische Stimulation mit Terbutalin beeinflusste das Diffusionsverhalten der verschiedenen Rezeptorzustände. Die Mobilitätsverteilung, die ermittelten Diffusionskoeffizienten sowie die laterale Ausdehnung der Einzelmolekülpfade veränderten sich durch die einsetzenden Desensitivierungs- und Internalisierungsprozesse, die durch die Stimulation ausgelöst wurden. Durch Unterbrechung der Signaltransduktion mittels Choleratoxin konnte gleichfalls Einfluss auf die laterale Diffusion der ß2AR-Alexa-NA-Komplexe genommen werden. Unter gleichen experimentellen Bedingungen wurden fluoreszenzkorrelationsspektroskopische Messungen durchgeführt. Diese offenbarten insbesondere eine sehr kurze Bindungsdauer des Liganden Alexa-NA an den ß2AR sowie die Existenz unspezifischer kurzer Kollisionsereignisse des Liganden mit der Plasmamembran. Die agonistische Terbutalinstimulation führte zu einer ausgeprägten Verdrängung von Alexa-NA vom ß2AR. Unter den gegebenen experimentellen Bedingungen konnten sowohl die Stärken der verwendeten Techniken als auch ihre Grenzen deutlich herausgearbeitet werden. Durch ergänzende Verwendung von Einzelmolekülmikroskopie und Fluoreszenzkorrelationsspektroskopie gelingt eine detaillierte Beschreibung von Diffusions- sowie Bindungsereignissen membranärer Rezeptoren. Characterization of the lateral diffusion of single ß2-adreneric receptor-ligand-complexes in living cells : Potential and limitations of single molecule microscopy and fluorescence correlation spectroscopy The present work describes lateral diffusion of the ß2-adrenergic receptor (ß2AR) complexed with noradrenaline labelled using the fluorescent dye Alexa Fluor 532 (Alexa-NA) in membranes from A549-cells. In order to study lateral diffusion, trajectories for single receptor-ligand-complexes were investigated using single molecule microscopy. Different diffusion modes, corresponding to different receptor states, were observed. In addition to immobile ß2AR-Alexa-NA-complexes, particularly slow lateral mobilities were observed for receptors in constricted domains. Short trajectory lengths indicated short dwell times for receptor-ligand-complexes. Agonistic stimulation with terbutaline influenced the diffusion behaviour of the different receptor states. As a result the distribution of mobilities, the diffusion coefficients, and the size of the trajectories were altered. After blocking signal transduction with choleratoxin, lateral receptor-ligand-complex mobility was affected. Fluorescence correlation spectroscopy measurements were performed under similar experimental conditions. In particular, a rather short ligand binding lifetime on the ß2AR and the existence of unspecific transient collision events between Alexa-NA and the plasma membrane were seen. Terbutaline treatment of the cells decreased Alexa-NA binding to the ß2AR. The potential and limitations of both, single molecule microscopy and fluorescence correlation spectroscopy, are discussed. In practice, each technique provides detailed information describing the diffusion and binding properties of membrane receptors. </p
Bilingualism and cognitive decline : a story of pride and prejudice
In a recent review, Mukadam, Sommerlad, and Livingston (2017) argue that bilingualism offers no protection against cognitive decline. The authors examined the results of 13 studies (five prospective, eight retrospective) in which monolinguals and bilinguals were compared for cognitive decline and onset of dementia symptoms. Analysis of four of the five prospective studies resulted in the conclusion that there was no difference between monolinguals and bilinguals, whereas seven of the eight retrospective studies actually showed bilingualism to result in a four-to-five year delay of symptom onset. The authors decided to ignore the results from the retrospective studies in favor of those from the prospective studies, reasoning that the former may be confounded by participants' cultural background and education levels. In this commentary, we argue that most of these studies actually controlled for these two variables and still found a positive effect of bilingualism. Furthermore, we argue that the meta-analysis of the prospective studies is not complete, lacking the results of two crucial reports. We conclude that the literature offers substantial evidence for a bilingual effect on the development of cognitive decline and dementia
Proteomic Assessment of C57BL/6 Hippocampi after Non-Selective Pharmacological Inhibition of Nitric Oxide Synthase Activity:Implications of Seizure-like Neuronal Hyperexcitability Followed by Tauopathy
Nitric oxide (NO) is a small gaseous signaling molecule responsible for maintaining homeostasis in a myriad of tissues and molecular pathways in neurology and the cardiovasculature. In recent years, there has been increasing interest in the potential interaction between arterial stiffness (AS), an independent cardiovascular risk factor, and neurodegenerative syndromes given increasingly epidemiological study reports. For this reason, we previously investigated the mechanistic convergence between AS and neurodegeneration via the progressive non-selective inhibition of all nitric oxide synthase (NOS) isoforms with N(G)-nitro-L-arginine methyl ester (L-NAME) in C57BL/6 mice. Our previous results showed progressively increased AS in vivo and impaired visuospatial learning and memory in L-NAME-treated C57BL/6 mice. In the current study, we sought to further investigate the progressive molecular signatures in hippocampal tissue via LC–MS/MS proteomic analysis. Our data implicate mitochondrial dysfunction due to progressive L-NAME treatment. Two weeks of L-NAME treatment implicates altered G-protein-coupled-receptor signaling in the nerve synapse and associated presence of seizures and altered emotional behavior. Furthermore, molecular signatures implicate the cerebral presence of seizure-related hyperexcitability after short-term (8 weeks) treatment followed by ribosomal dysfunction and tauopathy after long-term (16 weeks) treatment
A 22-single nucleotide polymorphism Alzheimer's disease risk score correlates with family history, onset age, and cerebrospinal fluid Aβ42
Introduction: The ability to identify individuals at increased genetic risk for Alzheimer's disease (AD) may streamline biomarker and drug trials and aid clinical and personal decision making.
Methods: We evaluated the discriminative ability of a genetic risk score (GRS) covering 22 published genetic risk loci forADin 1162 Flanders-BelgianADpatients and 1019 controls and assessed correlations with family history, onset age, and cerebrospinal fluid (CSF) biomarkers (A beta(1-42), T-Tau, P-Tau(181P)).
Results: A GRS including all single nucleotide polymorphisms (SNPs) and age-specific APOE epsilon 4 weights reached area under the curve (AUC) 0.70, which increased to AUC 0.78 for patients with familial predisposition. Risk of AD increased with GRS (odds ratio, 2.32 (95% confidence interval 2.08-2.58 per unit; P < 1.0e(-15)). Onset age and CSF Ab1-42 decreased with increasing GRS (P-onset_age 5 9.0e(-11); P-A beta = 8.9e(-7)).
Discussion: The discriminative ability of this 22-SNP GRS is still limited, but these data illustrate that incorporation of age-specific weights improves discriminative ability. GRS-phenotype correlations highlight the feasibility of identifying individuals at highest susceptibility. (C) 2015 The Authors. Published by Elsevier Inc. on behalf of the Alzheimer's Association
The Electrophysiological Correlates of Phoneme Perception in Primary Progressive Aphasia: A Preliminary Case Series
Aims: This study aimed to investigate phoneme perception in patients with primary progressive aphasia (PPA) by using the event-related potential (ERP) technique. These ERP components might contribute to the diagnostic process of PPA and its clinical variants (NFV: nonfluent variant, SV: semantic variant, LV: logopenic variant) and reveal insights about phoneme perception processes in these patients.Method: Phoneme discrimination and categorization processes were investigated by the mismatch negativity (MMN) and P300 in eight persons with early- and late-stage PPA (3 NFV, 2 LV, 2 SV, and 1 PPA-NOS; not otherwise specified) and 30 age-matched healthy adults. The mean amplitude, the onset latency, and the topographic distribution of both components in each patient were compared to the results of the control group.Results: The MMN was absent or the onset latency of the MMN was delayed in the patients with the NFV, LV, and PPA-NOS in comparison to the control group. In contrast, no differences in mean amplitudes and onset latencies of the MMN were found between the patients with the SV and the control group. Concerning the P300, variable results were found in the patients with the NFV, SV, and PPA-NOS, but the P300 of both patients with the LV was delayed and prolonged with increased mean amplitude in comparison to the control group.Conclusion: In this preliminary study, phoneme discrimination deficits were found in the patients with the NFV and LV, and variable deficits in phoneme categorization processes were found in all patients with PPA. In clinical practice, the MMN might be valuable to differentiate the SV from the NFV and the LV and the P300 to differentiate the LV from the NFV and the SV. Further research in larger and independent patient groups is required to investigate the applicability of these components in the diagnostic process and to determine the nature of these speech perception deficits in the clinical variants of PPA.</jats:p
Relevance of Host Cell Surface Glycan Structure for Cell Specificity of Influenza A Viruses
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Relevance of Host Cell Surface Glycan Structure for Cell Specificity of Influenza A Viruses
by Markus Kastner
1,†,‡, Andreas Karner
1,†,§ [ORCID] , Rong Zhu
1,† [ORCID] , Qiang Huang
2 [ORCID] , Andreas Geissner
3,4,‖, Anne Sadewasser
5,¶, Markus Lesch
6, Xenia Wörmann
6, Alexander Karlas
6,**, Peter H. Seeberger
3,4 [ORCID] , Thorsten Wolff
5 [ORCID] , Peter Hinterdorfer
1 [ORCID] , Andreas Herrmann
7 and Christian Sieben
8,9,* [ORCID]
1
Institute for Biophysics, Johannes Kepler University Linz, 4020 Linz, Austria
2
State Key Laboratory of Genetic Engineering, Shanghai Engineering Research Center of Industrial Microorganisms, MOE Engineering Research Center of Gene Technology, School of Life Sciences, Fudan University, Shanghai 200438, China
3
Department for Biomolecular Systems, Max Planck Institute for Colloids and Interfaces, 14476 Potsdam, Germany
4
Institute of Chemistry and Biochemistry, Freie Universität Berlin, 14195 Berlin, Germany
5
Division of Influenza and other Respiratory Viruses, Robert Koch-Institute, 13353 Berlin, Germany
6
Molecular Biology Department, Max Planck Institute for Infection Biology, 10117 Berlin, Germany
7
Institut für Chemie und Biochemie, Freie Universität Berlin, Altensteinstraße 23a, 14195 Berlin, Germany
8
Nanoscale Infection Biology Group, Department of Cell Biology, Helmholtz Centre for Infection Research, 38124 Braunschweig, Germany
9
Institute for Genetics, Technische Universität Braunschweig, 38106 Braunschweig, Germany
*
Author to whom correspondence should be addressed.
†
These authors contributed equally to this work.
‡
Current address: Materials Characterization Lab (MCL), Materials Research Institute (MRI), Pennsylvania State University, University Park, PA 16802, USA.
§
Current address: University of Applied Sciences Upper Austria, School of Medical Engineering and Applied Social Sciences, Garnisonstr. 21, 4020 Linz, Austria.
‖
Current address: Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, BC V6T 1Z1, Canada.
¶
Current address: Secarna Pharmaceuticals GmbH & Co. KG, Am Klopferspitz 19, 82152 Planegg, Germany.
**
Current address: Viral Vectors and Gene Therapeutics, ProBioGen AG, 13086 Berlin, Germany.
Viruses 2023, 15(7), 1507; https://doi.org/10.3390/v15071507
Received: 9 May 2023 / Revised: 21 June 2023 / Accepted: 28 June 2023 / Published: 5 July 2023
(This article belongs to the Special Issue Physical Virology - Viruses at Multiple Levels of Complexity)
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Abstract
Influenza A viruses (IAVs) initiate infection via binding of the viral hemagglutinin (HA) to sialylated glycans on host cells. HA’s receptor specificity towards individual glycans is well studied and clearly critical for virus infection, but the contribution of the highly heterogeneous and complex glycocalyx to virus–cell adhesion remains elusive. Here, we use two complementary methods, glycan arrays and single-virus force spectroscopy (SVFS), to compare influenza virus receptor specificity with virus binding to live cells. Unexpectedly, we found that HA’s receptor binding preference does not necessarily reflect virus–cell specificity. We propose SVFS as a tool to elucidate the cell binding preference of IAVs, thereby including the complex environment of sialylated receptors within the plasma membrane of living cells
Monoaminergic impairment in Down syndrome with Alzheimer's disease compared to early-onset Alzheimer's disease
Introduction: People with Down syndrome (DS) are at high risk for Alzheimer's disease (AD). Defects in monoamine neurotransmitter systems are implicated in DS and AD but have not been comprehensively studied in DS. Methods: Noradrenaline, adrenaline, and their metabolite 3-methoxy-4-hydroxyphenylglycol (MHPG); dopamine and its metabolites 3,4-dihydroxyphenylacetic acid (DOPAC) and homovanillic acid; and serotonin and its metabolite 5-hydroxyindoleacetic acid were quantified in 15 brain regions of DS without AD (DS, n = 4), DS with AD (DS+AD, n = 17), early-onset AD (EOAD, n = 11) patients, and healthy non-DS controls (n = 10) in the general population. Moreover, monoaminergic concentrations were determined in cerebrospinal fluid (CSF)/plasma samples of DS (n = 37/149), DS with prodromal AD (DS+pAD, n = 13/36), and DS+AD (n = 18/40). Results: In brain, noradrenergic and serotonergic compounds were overall reduced in DS+AD versus EOAD, while the dopaminergic system showed a bidirectional change. For DS versus non-DS controls, significantly decreased MHPG levels were noted in various brain regions, though to a lesser extent than for DS+AD versus EOAD. Apart from DOPAC, CSF/plasma concentrations were not altered between groups. Discussion: Monoamine neurotransmitters and metabolites were evidently impacted in DS, DS+AD, and EOAD. DS and DS+AD presented a remarkably similar monoaminergic profile, possibly related to early deposition of amyloid pathology in DS. To confirm whether monoaminergic alterations are indeed due to early amyloid β accumulation, future avenues include positron emission tomography studies of monoaminergic neurotransmission in relation to amyloid deposition, as well as relating monoaminergic concentrations to CSF/plasma levels of amyloid β and tau within individuals
Mutations in RNU7-1 weaken secondary RNA structure, induce MCP-1 and CXCL10 in CSF, and result in Aicardi-Goutières Syndrome with severe end-organ involvement
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